Literature DB >> 21359583

Histone H2A.Z acid patch residues required for deposition and function.

Kurt Jensen1, Maria Soledad Santisteban, Craig Urekar, M Mitchell Smith.   

Abstract

The incorporation of histone variants is one mechanism used by the eukaryotic cell to alter the generally repressive chromatin template. However, the exact molecular mechanisms that direct this incorporation are not well understood. The SWR1 chromatin remodeling complex that binds to and directs incorporation of histone variant H2A.Z into chromatin has been characterized, but significantly less information is available concerning the requirements on the H2A.Z target molecule. We performed an unbiased mutagenic screen designed to elucidate the function of H2A.Z in Saccharomyces cerevisiae. The screen identified residues within the conserved acidic patch of H2A.Z as being important for the function of the variant. We characterized single point mutations in the patch that are phenotypically sensitive to a variety of growth conditions and are expressed at lower protein levels, but are functionally defective (htz1-D99A, htz1-D99K, and htz1-E101K). The mutants were significantly less detectable by chromatin immunoprecipitation at PHO5, a gene previously described to be enriched for H2A.Z. These results identify acidic patch residues of H2A.Z that are critical for mediating deposition and function in chromatin, and represent potential candidates for the interaction of H2A.Z with its deposition and/or targeting machinery.

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Year:  2011        PMID: 21359583      PMCID: PMC3253533          DOI: 10.1007/s00438-011-0604-5

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  34 in total

1.  Crystal structure of a nucleosome core particle containing the variant histone H2A.Z.

Authors:  R K Suto; M J Clarkson; D J Tremethick; K Luger
Journal:  Nat Struct Biol       Date:  2000-12

2.  H2A.Z is required for global chromatin integrity and for recruitment of RNA polymerase II under specific conditions.

Authors:  M Adam; F Robert; M Larochelle; L Gaudreau
Journal:  Mol Cell Biol       Date:  2001-09       Impact factor: 4.272

3.  Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by the histone variant H2A.Z.

Authors:  Roger B Deal; Christopher N Topp; Elizabeth C McKinney; Richard B Meagher
Journal:  Plant Cell       Date:  2007-01-12       Impact factor: 11.277

4.  Chz1, a nuclear chaperone for histone H2AZ.

Authors:  Ed Luk; Ngoc-Diep Vu; Kem Patteson; Gaku Mizuguchi; Wei-Hua Wu; Anand Ranjan; Jonathon Backus; Subhojit Sen; Marc Lewis; Yawen Bai; Carl Wu
Journal:  Mol Cell       Date:  2007-02-09       Impact factor: 17.970

5.  SEF, a new protein required for flowering repression in Arabidopsis, interacts with PIE1 and ARP6.

Authors:  Rosana March-Díaz; Mario García-Domínguez; Francisco J Florencio; José C Reyes
Journal:  Plant Physiol       Date:  2006-12-01       Impact factor: 8.340

6.  Stepwise histone replacement by SWR1 requires dual activation with histone H2A.Z and canonical nucleosome.

Authors:  Ed Luk; Anand Ranjan; Peter C Fitzgerald; Gaku Mizuguchi; Yingzi Huang; Debbie Wei; Carl Wu
Journal:  Cell       Date:  2010-11-24       Impact factor: 41.582

7.  Histone H2A.Z has a conserved function that is distinct from that of the major H2A sequence variants.

Authors:  J D Jackson; M A Gorovsky
Journal:  Nucleic Acids Res       Date:  2000-10-01       Impact factor: 16.971

8.  Histone H2A.Z regulats transcription and is partially redundant with nucleosome remodeling complexes.

Authors:  M S Santisteban; T Kalashnikova; M M Smith
Journal:  Cell       Date:  2000-10-27       Impact factor: 41.582

9.  Histone H2A.Z and homologues of components of the SWR1 complex are required to control immunity in Arabidopsis.

Authors:  Rosana March-Díaz; Mario García-Domínguez; Jorge Lozano-Juste; José León; Francisco J Florencio; José C Reyes
Journal:  Plant J       Date:  2007-11-06       Impact factor: 6.417

10.  NMR structure of chaperone Chz1 complexed with histones H2A.Z-H2B.

Authors:  Zheng Zhou; Hanqiao Feng; D Flemming Hansen; Hidenori Kato; Ed Luk; Daron I Freedberg; Lewis E Kay; Carl Wu; Yawen Bai
Journal:  Nat Struct Mol Biol       Date:  2008-07-20       Impact factor: 15.369

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  13 in total

1.  Key functional regions in the histone variant H2A.Z C-terminal docking domain.

Authors:  Alice Y Wang; Maria J Aristizabal; Colm Ryan; Nevan J Krogan; Michael S Kobor
Journal:  Mol Cell Biol       Date:  2011-07-26       Impact factor: 4.272

2.  ANP32E is a histone chaperone that removes H2A.Z from chromatin.

Authors:  Arnaud Obri; Khalid Ouararhni; Christophe Papin; Marie-Laure Diebold; Kiran Padmanabhan; Martin Marek; Isabelle Stoll; Ludovic Roy; Patrick T Reilly; Tak W Mak; Stefan Dimitrov; Christophe Romier; Ali Hamiche
Journal:  Nature       Date:  2014-01-22       Impact factor: 49.962

3.  Molecular basis and specificity of H2A.Z-H2B recognition and deposition by the histone chaperone YL1.

Authors:  Chrysa M Latrick; Martin Marek; Khalid Ouararhni; Christophe Papin; Isabelle Stoll; Maria Ignatyeva; Arnaud Obri; Eric Ennifar; Stefan Dimitrov; Christophe Romier; Ali Hamiche
Journal:  Nat Struct Mol Biol       Date:  2016-03-14       Impact factor: 15.369

4.  Genome-wide identification of histone H2A and histone variant H2A.Z-interacting proteins by bPPI-seq.

Authors:  Yi Zhang; Wai Lim Ku; Shuai Liu; Kairong Cui; Wenfei Jin; Qingsong Tang; William Lu; Bing Ni; Keji Zhao
Journal:  Cell Res       Date:  2017-09-01       Impact factor: 25.617

5.  Ascending the nucleosome face: recognition and function of structured domains in the histone H2A-H2B dimer.

Authors:  John J Wyrick; McKenna N M Kyriss; William B Davis
Journal:  Biochim Biophys Acta       Date:  2012-04-12

6.  H2A.Z.2.2 is an alternatively spliced histone H2A.Z variant that causes severe nucleosome destabilization.

Authors:  Clemens Bönisch; Katrin Schneider; Sebastian Pünzeler; Sonja M Wiedemann; Christina Bielmeier; Marco Bocola; H Christian Eberl; Wolfgang Kuegel; Jürgen Neumann; Elisabeth Kremmer; Heinrich Leonhardt; Matthias Mann; Jens Michaelis; Lothar Schermelleh; Sandra B Hake
Journal:  Nucleic Acids Res       Date:  2012-03-29       Impact factor: 16.971

7.  A conserved function for the H2A.Z C terminus.

Authors:  Daniel Wratting; Angela Thistlethwaite; Michael Harris; Leo A H Zeef; Catherine B Millar
Journal:  J Biol Chem       Date:  2012-04-09       Impact factor: 5.157

8.  H2A.Z acidic patch couples chromatin dynamics to regulation of gene expression programs during ESC differentiation.

Authors:  Vidya Subramanian; Aprotim Mazumder; Lauren E Surface; Vincent L Butty; Paul A Fields; Allison Alwan; Lillian Torrey; Kevin K Thai; Stuart S Levine; Mark Bathe; Laurie A Boyer
Journal:  PLoS Genet       Date:  2013-08-22       Impact factor: 5.917

Review 9.  Histone H2A variants in nucleosomes and chromatin: more or less stable?

Authors:  Clemens Bönisch; Sandra B Hake
Journal:  Nucleic Acids Res       Date:  2012-09-21       Impact factor: 16.971

10.  Mutations in non-acid patch residues disrupt H2A.Z's association with chromatin through multiple mechanisms.

Authors:  Thomas J Wood; Angela Thistlethwaite; Michael R Harris; Simon C Lovell; Catherine B Millar
Journal:  PLoS One       Date:  2013-10-01       Impact factor: 3.240

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