Literature DB >> 21341835

Renewal theory for single-molecule systems with multiple reaction channels.

A M Berezhkovskii1.   

Abstract

Some single-molecule systems share a common feature: the system performs different cycles returning after each cycle to the same state. In such systems we deal with renewal processes. Examples include (1) single-molecule enzymatic reactions, (2) membrane transport through single-occupancy channels, (3) single-molecule fluorescence spectroscopy, and (4) motion of molecular motors. The paper is focused on the analysis of such systems by means of the renewal theory. To be more specific, the theory of renewal processes is used to study multivariate distribution functions of the numbers of different events in a given observation time. Our main results are simple formulas derived for the Laplace transforms of the distribution functions. General results are illustrated by consideration of several examples.

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Year:  2011        PMID: 21341835      PMCID: PMC3077813          DOI: 10.1063/1.3551506

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  11 in total

1.  Novel chemical kinetics for a single enzyme reaction: relationship between substrate concentration and the second moment of enzyme reaction time.

Authors:  Won Jung; Seongeun Yang; Jaeyoung Sung
Journal:  J Phys Chem B       Date:  2010-08-05       Impact factor: 2.991

2.  Theory of the statistics of kinetic transitions with application to single-molecule enzyme catalysis.

Authors:  Irina V Gopich; Attila Szabo
Journal:  J Chem Phys       Date:  2006-04-21       Impact factor: 3.488

3.  Generalized Haldane equation and fluctuation theorem in the steady-state cycle kinetics of single enzymes.

Authors:  Hong Qian; X Sunney Xie
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-07-12

Review 4.  Kinesin motor mechanics: binding, stepping, tracking, gating, and limping.

Authors:  Steven M Block
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

5.  Effect of interactions on molecular fluxes and fluctuations in the transport across membrane channels.

Authors:  Anatoly B Kolomeisky; Stanislav Kotsev
Journal:  J Chem Phys       Date:  2008-02-28       Impact factor: 3.488

6.  Propagators and related descriptors for non-Markovian asymmetric random walks with and without boundaries.

Authors:  Alexander M Berezhkovskii; George H Weiss
Journal:  J Chem Phys       Date:  2008-01-28       Impact factor: 3.488

7.  Fluctuation theorem for channel-facilitated membrane transport of interacting and noninteracting solutes.

Authors:  Alexander M Berezhkovskii; Sergey M Bezrukov
Journal:  J Phys Chem B       Date:  2008-02-13       Impact factor: 2.991

Review 8.  Cytoplasmic diffusion: molecular motors mix it up.

Authors:  Clifford P Brangwynne; Gijsje H Koenderink; Frederick C MacKintosh; David A Weitz
Journal:  J Cell Biol       Date:  2008-11-10       Impact factor: 10.539

9.  Generic schemes for single-molecule kinetics. 1: Self-consistent pathway solutions for renewal processes.

Authors:  Jianshu Cao; Robert J Silbey
Journal:  J Phys Chem B       Date:  2008-09-25       Impact factor: 2.991

Review 10.  Molecular motors: a theorist's perspective.

Authors:  Anatoly B Kolomeisky; Michael E Fisher
Journal:  Annu Rev Phys Chem       Date:  2007       Impact factor: 12.703

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  1 in total

1.  Extracting conformational memory from single-molecule kinetic data.

Authors:  Steve Pressé; Julian Lee; Ken A Dill
Journal:  J Phys Chem B       Date:  2013-01-09       Impact factor: 2.991

  1 in total

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