Literature DB >> 21334965

Regulated RNA stability in the Gram positives.

Ciarán Condon1, David H Bechhofer.   

Abstract

Regulation of bacterial gene expression at the post-transcriptional level has emerged as a major control mechanism, although not yet as well recognized as the mechanisms of control at the transcriptional level. In this article, we focus on regulated RNA decay in the control of gene expression in Gram-positive organisms, with an emphasis on Bacillus subtilis. Discovery of new ribonuclease activities in B. subtilis and other Gram-positive species, especially the dual-functioning RNase J1, which specifies both an endonuclease activity and the long-sought bacterial 5'-to-3' exoribonuclease activity, has led to the recognition of intriguing mechanisms of gene regulation at the level of RNA decay.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21334965      PMCID: PMC3078962          DOI: 10.1016/j.mib.2011.01.010

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  52 in total

1.  Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation.

Authors:  Douglas W Selinger; Rini Mukherjee Saxena; Kevin J Cheung; George M Church; Carsten Rosenow
Journal:  Genome Res       Date:  2003-02       Impact factor: 9.043

2.  Initiation of RNA decay in Escherichia coli by 5' pyrophosphate removal.

Authors:  Helena Celesnik; Atilio Deana; Joel G Belasco
Journal:  Mol Cell       Date:  2007-07-06       Impact factor: 17.970

3.  The gene encoding RNase III in Streptomyces coelicolor is transcribed during exponential phase and is required for antibiotic production and for proper sporulation.

Authors:  Jason K Sello; Mark J Buttner
Journal:  J Bacteriol       Date:  2008-03-21       Impact factor: 3.490

4.  Structural insights into the dual activity of RNase J.

Authors:  Inés Li de la Sierra-Gallay; Léna Zig; Ailar Jamalli; Harald Putzer
Journal:  Nat Struct Mol Biol       Date:  2008-01-20       Impact factor: 15.369

5.  Role of Bacillus subtilis RNase J1 endonuclease and 5'-exonuclease activities in trp leader RNA turnover.

Authors:  Gintaras Deikus; Ciarán Condon; David H Bechhofer
Journal:  J Biol Chem       Date:  2008-04-29       Impact factor: 5.157

6.  Role of mRNA stability in growth phase regulation of gene expression in the group A streptococcus.

Authors:  Timothy C Barnett; Julia V Bugrysheva; June R Scott
Journal:  J Bacteriol       Date:  2006-12-22       Impact factor: 3.490

7.  The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal.

Authors:  Atilio Deana; Helena Celesnik; Joel G Belasco
Journal:  Nature       Date:  2008-01-17       Impact factor: 49.962

8.  Mechanism of mRNA destabilization by the glmS ribozyme.

Authors:  Jennifer A Collins; Irnov Irnov; Stephanie Baker; Wade C Winkler
Journal:  Genes Dev       Date:  2007-12-15       Impact factor: 11.361

9.  3' Terminal oligo U-tract-mediated stimulation of decapping.

Authors:  Man-Gen Song; Megerditch Kiledjian
Journal:  RNA       Date:  2007-10-17       Impact factor: 4.942

10.  In vitro analysis of the interaction between the small RNA SR1 and its primary target ahrC mRNA.

Authors:  Nadja Heidrich; Isabella Moll; Sabine Brantl
Journal:  Nucleic Acids Res       Date:  2007-06-18       Impact factor: 16.971

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  21 in total

1.  Mechanism and distribution of glmS ribozymes.

Authors:  Phillip J McCown; Wade C Winkler; Ronald R Breaker
Journal:  Methods Mol Biol       Date:  2012

Review 2.  RNA-mediated regulation in pathogenic bacteria.

Authors:  Isabelle Caldelari; Yanjie Chao; Pascale Romby; Jörg Vogel
Journal:  Cold Spring Harb Perspect Med       Date:  2013-09-01       Impact factor: 6.915

3.  A highly unstable transcript makes CwlO D,L-endopeptidase expression responsive to growth conditions in Bacillus subtilis.

Authors:  David Noone; Letal I Salzberg; Eric Botella; Katrin Bäsell; Dörte Becher; Haike Antelmann; Kevin M Devine
Journal:  J Bacteriol       Date:  2013-10-25       Impact factor: 3.490

4.  Post-transcriptional regulation by distal Shine-Dalgarno sequences in the grpE-dnaK intergenic region of Streptococcus mutans.

Authors:  Sara R Palmer; Robert A Burne
Journal:  Mol Microbiol       Date:  2015-09-04       Impact factor: 3.501

Review 5.  How bacterial cells keep ribonucleases under control.

Authors:  Murray P Deutscher
Journal:  FEMS Microbiol Rev       Date:  2015-04-14       Impact factor: 16.408

Review 6.  RNA decay: a novel therapeutic target in bacteria.

Authors:  Tess M Eidem; Christelle M Roux; Paul M Dunman
Journal:  Wiley Interdiscip Rev RNA       Date:  2012-02-28       Impact factor: 9.957

Review 7.  RNA-mediated regulation in Gram-positive pathogens: an overview punctuated with examples from the group A Streptococcus.

Authors:  Eric W Miller; Tram N Cao; Kathryn J Pflughoeft; Paul Sumby
Journal:  Mol Microbiol       Date:  2014-08-21       Impact factor: 3.501

8.  Measurements of mRNA degradation in Borrelia burgdorferi.

Authors:  Linda Archambault; J Simmons Borchert; Jennifer Bergeron; Santina Snow; Paula Jean Schlax
Journal:  J Bacteriol       Date:  2013-08-23       Impact factor: 3.490

9.  Role of mRNA stability during bacterial adaptation.

Authors:  Clémentine Dressaire; Flora Picard; Emma Redon; Pascal Loubière; Isabelle Queinnec; Laurence Girbal; Muriel Cocaign-Bousquet
Journal:  PLoS One       Date:  2013-03-13       Impact factor: 3.240

10.  A minimal bacterial RNase J-based degradosome is associated with translating ribosomes.

Authors:  Yulia Redko; Sylvie Aubert; Anna Stachowicz; Pascal Lenormand; Abdelkader Namane; Fabien Darfeuille; Marie Thibonnier; Hilde De Reuse
Journal:  Nucleic Acids Res       Date:  2012-10-22       Impact factor: 16.971

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