Literature DB >> 21327162

The impact of transcriptional cycling on gene regulation.

Carsten Carlberg1.   

Abstract

Research of the past decade showed that transcriptional regulation could be a highly dynamic and cyclical process. Many transcription factors and their co-regulators cyclically associate with a periodicity of 30-75 min with regulatory chromatin regions resulting in dynamically changing chromatin marks and cyclical activities of RNA polymerase II in mRNA synthesis.

Keywords:  chromatin; gene regulation; nuclear receptor; stochastic modeling; transcription

Mesh：

Substances：

Year:  2010        PMID： 21327162      PMCID： PMC3035189          DOI： 10.4161/trns.1.1.11984

Source DB:  PubMed          Journal:  Transcription        ISSN： 2154-1272


  30 in total

1.  Population-level transcription cycles derive from stochastic timing of single-cell transcription.

Authors:  Tatjana Degenhardt; Katja N Rybakova; Aleksandra Tomaszewska; Martijn J Moné; Hans V Westerhoff; Frank J Bruggeman; Carsten Carlberg
Journal:  Cell       Date:  2009-08-07       Impact factor: 41.582

Review 2.  Marking time: the dynamic role of chromatin and covalent modification in transcription.

Authors:  George Reid; Rozenn Gallais; Raphaël Métivier
Journal:  Int J Biochem Cell Biol       Date:  2008-09-02       Impact factor: 5.085

3.  Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription.

Authors:  Y Shang; X Hu; J DiRenzo; M A Lazar; M Brown
Journal:  Cell       Date:  2000-12-08       Impact factor: 41.582

Review 4.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

5.  Pulsatile stimulation determines timing and specificity of NF-kappaB-dependent transcription.

Authors:  Louise Ashall; Caroline A Horton; David E Nelson; Pawel Paszek; Claire V Harper; Kate Sillitoe; Sheila Ryan; David G Spiller; John F Unitt; David S Broomhead; Douglas B Kell; David A Rand; Violaine Sée; Michael R H White
Journal:  Science       Date:  2009-04-10       Impact factor: 47.728

Review 6.  Transcription dynamics.

Authors:  Gordon L Hager; James G McNally; Tom Misteli
Journal:  Mol Cell       Date:  2009-09-24       Impact factor: 17.970

7.  Ultradian hormone stimulation induces glucocorticoid receptor-mediated pulses of gene transcription.

Authors:  Diana A Stavreva; Malgorzata Wiench; Sam John; Becky L Conway-Campbell; Mervyn A McKenna; John R Pooley; Thomas A Johnson; Ty C Voss; Stafford L Lightman; Gordon L Hager
Journal:  Nat Cell Biol       Date:  2009-08-16       Impact factor: 28.824

8.  Cyclical regulation of the insulin-like growth factor binding protein 3 gene in response to 1alpha,25-dihydroxyvitamin D3.

Authors:  Marjo Malinen; Jussi Ryynänen; Merja Heinäniemi; Sami Väisänen; Carsten Carlberg
Journal:  Nucleic Acids Res       Date:  2010-09-19       Impact factor: 16.971

9.  On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter.

Authors:  Antoine Coulon; Olivier Gandrillon; Guillaume Beslon
Journal:  BMC Syst Biol       Date:  2010-01-08

10.  Cyclical chromatin looping and transcription factor association on the regulatory regions of the p21 (CDKN1A) gene in response to 1alpha,25-dihydroxyvitamin D3.

Authors:  Anna Saramäki; Sarah Diermeier; Ruth Kellner; Heidi Laitinen; Sami Vaïsänen; Carsten Carlberg
Journal:  J Biol Chem       Date:  2009-01-03       Impact factor: 5.157
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  4 in total

1.  An oxidative DNA "damage" and repair mechanism localized in the VEGF promoter is important for hypoxia-induced VEGF mRNA expression.

Authors:  Viktor Pastukh; Justin T Roberts; David W Clark; Gina C Bardwell; Mita Patel; Abu-Bakr Al-Mehdi; Glen M Borchert; Mark N Gillespie
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2015-10-02       Impact factor: 5.464

2.  A hierarchical regulatory network analysis of the vitamin D induced transcriptome reveals novel regulators and complete VDR dependency in monocytes.

Authors:  Timothy Warwick; Marcel H Schulz; Stefan Günther; Ralf Gilsbach; Antonio Neme; Carsten Carlberg; Ralf P Brandes; Sabine Seuter
Journal:  Sci Rep       Date:  2021-03-22       Impact factor: 4.379

3.  Cyclical regulation of the insulin-like growth factor binding protein 3 gene in response to 1alpha,25-dihydroxyvitamin D3.

Authors:  Marjo Malinen; Jussi Ryynänen; Merja Heinäniemi; Sami Väisänen; Carsten Carlberg
Journal:  Nucleic Acids Res       Date:  2010-09-19       Impact factor: 16.971

4.  Chromatin acetylation at transcription start sites and vitamin D receptor binding regions relates to effects of 1α,25-dihydroxyvitamin D3 and histone deacetylase inhibitors on gene expression.

Authors:  Sabine Seuter; Sami Heikkinen; Carsten Carlberg
Journal:  Nucleic Acids Res       Date:  2012-10-23       Impact factor: 16.971
  4 in total

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