Literature DB >> 21326903

Transcriptional interference by RNA polymerase pausing and dislodgement of transcription factors.

Adam C Palmer1, J Barry Egan, Keith E Shearwin.   

Abstract

Transcriptional interference is the in cis suppression of one transcriptional process by another. Mathematical modeling shows that promoter occlusion by elongating RNA polymerases cannot produce strong interference. Interference may instead be generated by (1) dislodgement of slow-to-assemble pre-initiation complexes and transcription factors and (2) prolonged occlusion by paused RNA polymerases.

Keywords:  RNAP pausing; TRCF; dislodgement; gene regulation; tandem promoters; transcription factor; transcriptional interference

Mesh：

Substances：

Year:  2011        PMID： 21326903      PMCID： PMC3023640          DOI： 10.4161/trns.2.1.13511

Source DB:  PubMed          Journal:  Transcription        ISSN： 2154-1272


  39 in total

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Authors:  Joseph A Martens; Pei-Yun Jenny Wu; Fred Winston
Journal:  Genes Dev       Date:  2005-11-15       Impact factor: 11.361

2.  In vivo dynamics of RNA polymerase II transcription.

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Journal:  Nat Struct Mol Biol       Date:  2007-08-05       Impact factor: 15.369

3.  A mouse gene that coordinates epigenetic controls and transcriptional interference to achieve tissue-specific expression.

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Journal:  Mol Cell Biol       Date:  2007-11-12       Impact factor: 4.272

4.  Noncoding transcription controls downstream promoters to regulate T-cell receptor alpha recombination.

Authors:  Iratxe Abarrategui; Michael S Krangel
Journal:  EMBO J       Date:  2007-09-20       Impact factor: 11.598

5.  Concurrent fast and slow cycling of a transcriptional activator at an endogenous promoter.

Authors:  Tatiana S Karpova; Min J Kim; Corentin Spriet; Kip Nalley; Timothy J Stasevich; Zoulika Kherrouche; Laurent Heliot; James G McNally
Journal:  Science       Date:  2008-01-25       Impact factor: 47.728

6.  Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference.

Authors:  Svetlana Petruk; Yurii Sedkov; Kristen M Riley; Jacob Hodgson; Francois Schweisguth; Susumu Hirose; James B Jaynes; Hugh W Brock; Alexander Mazo
Journal:  Cell       Date:  2006-12-15       Impact factor: 41.582

7.  Transcriptional interferences in cis natural antisense transcripts of humans and mice.

Authors:  Naoki Osato; Yoshiyuki Suzuki; Kazuho Ikeo; Takashi Gojobori
Journal:  Genetics       Date:  2007-04-03       Impact factor: 4.562

8.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

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Journal:  Nature       Date:  2007-06-14       Impact factor: 49.962

9.  Transcriptional interference among the murine beta-like globin genes.

Authors:  Xiao Hu; Susan Eszterhas; Nicolas Pallazzi; Eric E Bouhassira; Jennifer Fields; Osamu Tanabe; Scott A Gerber; Michael Bulger; James Douglas Engel; Mark Groudine; Steven Fiering
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10.  A regulatory SNP causes a human genetic disease by creating a new transcriptional promoter.

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Journal:  Science       Date:  2006-05-26       Impact factor: 47.728
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  36 in total

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Journal:  J Med Genet       Date:  2013-06-07       Impact factor: 6.318

5.  Regulation of internal promoters in a zinc-responsive operon is influenced by transcription from upstream promoters.

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6.  Imprinted chromatin around DIRAS3 regulates alternative splicing of GNG12-AS1, a long noncoding RNA.

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7.  An ArsR/SmtB family member is involved in the regulation by arsenic of the arsenite oxidase operon in Thiomonas arsenitoxydans.

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8.  Timing of transcriptional quiescence during gametogenesis is controlled by global histone H3K4 demethylation.

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9.  Clonal Dynamics In Vivo of Virus Integration Sites of T Cells Expressing a Safety Switch.

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10.  Serial Activation of the Inducible Caspase 9 Safety Switch After Human Stem Cell Transplantation.

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