Literature DB >> 21326894

Keeping up to speed with the transcription termination factor Rho motor.

Marc Boudvillain1, Marcello Nollmann, Emmanuel Margeat.   

Abstract

In bacteria, a subset of transcription termination events requires the participation of the transcription termination factor Rho. Rho is a homo-hexameric, ring-shaped, motor protein that uses the energy derived from its RNA-dependent ATPase activity to directionally unwind RNA and RNA-DNA helices and to dissociate transcription elongation complexes. Despite a wealth of structural, biochemical and genetic data, the molecular mechanisms used by Rho to carry out its biological functions remain poorly understood. Here, we briefly discuss the most recent findings on Rho mechanisms and function and highlight important questions that remain to be addressed.

Keywords:  RNA; helicase; hexamer; molecular motor; transcription termination

Mesh:

Substances:

Year:  2010        PMID: 21326894      PMCID: PMC3023631          DOI: 10.4161/trns.1.2.12232

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  28 in total

1.  The kinetic pathway of RNA binding to the Escherichia coli transcription termination factor Rho.

Authors:  D E Kim; S S Patel
Journal:  J Biol Chem       Date:  2001-01-23       Impact factor: 5.157

2.  Influence of substrate composition on the helicase activity of transcription termination factor Rho: reduced processivity of Rho hexamers during unwinding of RNA-DNA hybrid regions.

Authors:  Céline Walmacq; A Rachid Rahmouni; Marc Boudvillain
Journal:  J Mol Biol       Date:  2004-09-10       Impact factor: 5.469

3.  Forward translocation is the natural pathway of RNA release at an intrinsic terminator.

Authors:  Thomas J Santangelo; Jeffrey W Roberts
Journal:  Mol Cell       Date:  2004-04-09       Impact factor: 17.970

Review 4.  Why is transcription coupled to translation in bacteria?

Authors:  J Gowrishankar; R Harinarayanan
Journal:  Mol Microbiol       Date:  2004-11       Impact factor: 3.501

5.  Mechanism of DNA translocation in a replicative hexameric helicase.

Authors:  Eric J Enemark; Leemor Joshua-Tor
Journal:  Nature       Date:  2006-07-20       Impact factor: 49.962

6.  Testing the steric exclusion model for hexameric helicases: substrate features that alter RNA-DNA unwinding by the transcription termination factor Rho.

Authors:  Céline Walmacq; A Rachid Rahmouni; Marc Boudvillain
Journal:  Biochemistry       Date:  2006-05-09       Impact factor: 3.162

7.  Role of DNA bubble rewinding in enzymatic transcription termination.

Authors:  Joo-Seop Park; Jeffrey W Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-21       Impact factor: 11.205

8.  A physical model for the translocation and helicase activities of Escherichia coli transcription termination protein Rho.

Authors:  J Geiselmann; Y Wang; S E Seifried; P H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-15       Impact factor: 11.205

9.  Evidence supporting a tethered tracking model for helicase activity of Escherichia coli Rho factor.

Authors:  E J Steinmetz; T Platt
Journal:  Proc Natl Acad Sci U S A       Date:  1994-02-15       Impact factor: 11.205

10.  A bacterial transcription terminator with inefficient molecular motor action but with a robust transcription termination function.

Authors:  Nisha C Kalarickal; Amitabh Ranjan; B Sudha Kalyani; Megha Wal; Ranjan Sen
Journal:  J Mol Biol       Date:  2009-12-21       Impact factor: 5.469

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  12 in total

1.  An RNA motif advances transcription by preventing Rho-dependent termination.

Authors:  Anastasia Sevostyanova; Eduardo A Groisman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-16       Impact factor: 11.205

2.  Transcription termination controls prophage maintenance in Escherichia coli genomes.

Authors:  Rachid Menouni; Stéphanie Champ; Leon Espinosa; Marc Boudvillain; Mireille Ansaldi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-12       Impact factor: 11.205

3.  A role for Rho-dependent polarity in gene regulation by a noncoding small RNA.

Authors:  Lionello Bossi; Annie Schwartz; Benoit Guillemardet; Marc Boudvillain; Nara Figueroa-Bossi
Journal:  Genes Dev       Date:  2012-08-15       Impact factor: 11.361

4.  Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor.

Authors:  Nathan D Thomsen; Michael R Lawson; Lea B Witkowsky; Song Qu; James M Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-16       Impact factor: 11.205

5.  Rho and NusG suppress pervasive antisense transcription in Escherichia coli.

Authors:  Jason M Peters; Rachel A Mooney; Jeffrey A Grass; Erik D Jessen; Frances Tran; Robert Landick
Journal:  Genes Dev       Date:  2012-12-01       Impact factor: 11.361

6.  A Bacteriophage Capsid Protein Is an Inhibitor of a Conserved Transcription Terminator of Various Bacterial Pathogens.

Authors:  Gairika Ghosh; Jayavardhana Reddy; Susmit Sambhare; Ranjan Sen
Journal:  J Bacteriol       Date:  2017-12-05       Impact factor: 3.490

7.  Bacterial transcription terminators: the RNA 3'-end chronicles.

Authors:  Jason M Peters; Abbey D Vangeloff; Robert Landick
Journal:  J Mol Biol       Date:  2011-03-23       Impact factor: 5.469

8.  Synthetic promoters functional in Francisella novicida and Escherichia coli.

Authors:  Ralph L McWhinnie; Francis E Nano
Journal:  Appl Environ Microbiol       Date:  2013-10-18       Impact factor: 4.792

9.  Transcription: base J blocks the way.

Authors:  Dane Z Hazelbaker; Stephen Buratowski
Journal:  Curr Biol       Date:  2012-11-20       Impact factor: 10.834

10.  Mycobacterium tuberculosis Rho is an NTPase with distinct kinetic properties and a novel RNA-binding subdomain.

Authors:  Anirban Mitra; Rachel Misquitta; Valakunja Nagaraja
Journal:  PLoS One       Date:  2014-09-17       Impact factor: 3.240

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