Literature DB >> 21326884

Genome stability control by checkpoint regulation of tRNA gene transcription.

Brett W Clelland1, Michael C Schultz.   

Abstract

The RNA polymerase III pre-initiation complex (PIC) assembled on yeast tRNA genes naturally causes replication fork pausing that contributes to genome instability. Mechanistic coupling of the fork pausing activity of tRNA genes to replication has long been considered likely, but only recently demonstrated. In contrast to the expectation that this coupling might occur by a passive mechanism such as direct disruption of transcription factor-DNA complexes by a component of the replisome, it turns out that disassembly of the RNA polymerase III PIC is actively controlled by the replication stress checkpoint signal transduction pathway. This advance supports a new model in which checkpoint-dependent disassembly of the transcription machinery at tRNA genes is a vital component of an overall system of genome stability control that also targets replication and DNA repair proteins.

Entities:  

Year:  2010        PMID: 21326884      PMCID: PMC3023570          DOI: 10.4161/trns.1.3.13735

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  80 in total

Review 1.  Replication fork pausing and recombination or "gimme a break".

Authors:  R Rothstein; B Michel; S Gangloff
Journal:  Genes Dev       Date:  2000-01-01       Impact factor: 11.361

Review 2.  Checkpoint responses to replication fork barriers.

Authors:  Sarah Lambert; Antony M Carr
Journal:  Biochimie       Date:  2004-12-10       Impact factor: 4.079

3.  Exploring the mode-of-action of bioactive compounds by chemical-genetic profiling in yeast.

Authors:  Ainslie B Parsons; Andres Lopez; Inmar E Givoni; David E Williams; Christopher A Gray; Justin Porter; Gordon Chua; Richelle Sopko; Renee L Brost; Cheuk-Hei Ho; Jiyi Wang; Troy Ketela; Charles Brenner; Julie A Brill; G Esteban Fernandez; Todd C Lorenz; Gregory S Payne; Satoru Ishihara; Yoshikazu Ohya; Brenda Andrews; Timothy R Hughes; Brendan J Frey; Todd R Graham; Raymond J Andersen; Charles Boone
Journal:  Cell       Date:  2006-08-11       Impact factor: 41.582

4.  Dual regulation of Cdc25A by Chk1 and p53-ATF3 in DNA replication checkpoint control.

Authors:  Anastasia R Demidova; Mei Yee Aau; Li Zhuang; Qiang Yu
Journal:  J Biol Chem       Date:  2008-12-07       Impact factor: 5.157

5.  The Tof1p-Csm3p protein complex counteracts the Rrm3p helicase to control replication termination of Saccharomyces cerevisiae.

Authors:  Bidyut K Mohanty; Narendra K Bairwa; Deepak Bastia
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-17       Impact factor: 11.205

6.  A replication fork barrier at the 3' end of yeast ribosomal RNA genes.

Authors:  B J Brewer; W L Fangman
Journal:  Cell       Date:  1988-11-18       Impact factor: 41.582

7.  Activation of expression of multiple subfamilies of human Alu elements by adenovirus type 5 and herpes simplex virus type 1.

Authors:  B Panning; J R Smiley
Journal:  J Mol Biol       Date:  1995-05-05       Impact factor: 5.469

8.  ATR homolog Mec1 promotes fork progression, thus averting breaks in replication slow zones.

Authors:  Rita S Cha; Nancy Kleckner
Journal:  Science       Date:  2002-07-26       Impact factor: 47.728

9.  Mitotic repression of RNA polymerase III transcription in vitro mediated by phosphorylation of a TFIIIB component.

Authors:  J M Gottesfeld; V J Wolf; T Dang; D J Forbes; P Hartl
Journal:  Science       Date:  1994-01-07       Impact factor: 47.728

10.  TRRAP and GCN5 are used by c-Myc to activate RNA polymerase III transcription.

Authors:  Niall S Kenneth; Ben A Ramsbottom; Natividad Gomez-Roman; Lynne Marshall; Philip A Cole; Robert J White
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-11       Impact factor: 11.205

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  11 in total

1.  Recovery of RNA polymerase III transcription from the glycerol-repressed state: revisiting the role of protein kinase CK2 in Maf1 phosphoregulation.

Authors:  Robyn D Moir; Jaehoon Lee; Ian M Willis
Journal:  J Biol Chem       Date:  2012-07-18       Impact factor: 5.157

2.  tRNA processing defects induce replication stress and Chk2-dependent disruption of piRNA transcription.

Authors:  Anahi Molla-Herman; Ana Maria Vallés; Carine Ganem-Elbaz; Christophe Antoniewski; Jean-René Huynh
Journal:  EMBO J       Date:  2015-10-15       Impact factor: 11.598

Review 3.  RNA Polymerase III Advances: Structural and tRNA Functional Views.

Authors:  Aneeshkumar G Arimbasseri; Richard J Maraia
Journal:  Trends Biochem Sci       Date:  2016-04-08       Impact factor: 13.807

Review 4.  The La and related RNA-binding proteins (LARPs): structures, functions, and evolving perspectives.

Authors:  Richard J Maraia; Sandy Mattijssen; Isabel Cruz-Gallardo; Maria R Conte
Journal:  Wiley Interdiscip Rev RNA       Date:  2017-08-07       Impact factor: 9.957

5.  Senataxin associates with replication forks to protect fork integrity across RNA-polymerase-II-transcribed genes.

Authors:  Amaya Alzu; Rodrigo Bermejo; Martina Begnis; Chiara Lucca; Daniele Piccini; Walter Carotenuto; Marco Saponaro; Alessandra Brambati; Andrea Cocito; Marco Foiani; Giordano Liberi
Journal:  Cell       Date:  2012-11-09       Impact factor: 41.582

6.  Intergenic transcriptional interference is blocked by RNA polymerase III transcription factor TFIIIB in Saccharomyces cerevisiae.

Authors:  Asawari Korde; Jessica M Rosselot; David Donze
Journal:  Genetics       Date:  2013-12-13       Impact factor: 4.562

7.  Coordination of tRNA transcription with export at nuclear pore complexes in budding yeast.

Authors:  Miao Chen; Marc R Gartenberg
Journal:  Genes Dev       Date:  2014-05-01       Impact factor: 11.361

8.  Compromised RNA polymerase III complex assembly leads to local alterations of intergenic RNA polymerase II transcription in Saccharomyces cerevisiae.

Authors:  Qing Wang; Chance M Nowak; Asawari Korde; Dong-Ha Oh; Maheshi Dassanayake; David Donze
Journal:  BMC Biol       Date:  2014-10-28       Impact factor: 7.431

Review 9.  Factors That Shape Eukaryotic tRNAomes:  Processing, Modification and Anticodon-Codon Use.

Authors:  Richard J Maraia; Aneeshkumar G Arimbasseri
Journal:  Biomolecules       Date:  2017-03-08

10.  Enjoy the Silence: Nearly Half of Human tRNA Genes Are Silent.

Authors:  Adrian Gabriel Torres
Journal:  Bioinform Biol Insights       Date:  2019-08-08
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