Literature DB >> 21322480

Comparison of QM-only and QM/MM models for the mechanism of tyrosinase.

Per E M Siegbahn1, Tomasz Borowski.   

Abstract

Two previous studies on the mechanism of tyrosinase have given quite conflicting results. In a QM-only study using a rather small model, a mechanism was suggested in which the tyrosine proton is removed before catalysis. This was followed by catalytic cycles where a superoxo ligand attacks the phenolate ring. In another, more recent study, at the QM/MM level including the entire protein in the model, a quite different mechanism was instead advocated where a bridging O2H ligand was homolytically cleaved. That mechanism was rejected in the earlier QM-only study as having a prohibitively large barrier for O-O bond cleavage. In the present study, this discrepancy between the previous studies is investigated by new QM-only and QM/MM calculations.

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Year:  2011        PMID: 21322480     DOI: 10.1039/c004378h

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  3 in total

Review 1.  Structure-function correlations in tyrosinases.

Authors:  Margarita Kanteev; Mor Goldfeder; Ayelet Fishman
Journal:  Protein Sci       Date:  2015-07-07       Impact factor: 6.725

2.  Exploring the Dependence of QM/MM Calculations of Enzyme Catalysis on the Size of the QM Region.

Authors:  Garima Jindal; Arieh Warshel
Journal:  J Phys Chem B       Date:  2016-09-09       Impact factor: 2.991

3.  Octahedral Trifluoromagnesate, an Anomalous Metal Fluoride Species, Stabilizes the Transition State in a Biological Motor.

Authors:  Mengyu Ge; Robert W Molt; Huw T Jenkins; G Michael Blackburn; Yi Jin; Alfred A Antson
Journal:  ACS Catal       Date:  2021-02-17       Impact factor: 13.084

  3 in total

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