Literature DB >> 21321234

Transmembrane orientation and possible role of the fusogenic peptide from parainfluenza virus 5 (PIV5) in promoting fusion.

Jason E Donald1, Yao Zhang, Giacomo Fiorin, Vincenzo Carnevale, David R Slochower, Feng Gai, Michael L Klein, William F DeGrado.   

Abstract

Membrane fusion is required for diverse biological functions ranging from viral infection to neurotransmitter release. Fusogenic proteins increase the intrinsically slow rate of fusion by coupling energetically downhill conformational changes of the protein to kinetically unfavorable fusion of the membrane-phospholipid bilayers. Class I viral fusogenic proteins have an N-terminal hydrophobic fusion peptide (FP) domain, important for interaction with the target membrane, plus a C-terminal transmembrane (C-term-TM) helical membrane anchor. The role of the water-soluble regions of fusogenic proteins has been extensively studied, but the contributions of the membrane-interacting FP and C-term-TM peptides are less well characterized. Typically, FPs are thought to bind to membranes at an angle that allows helix penetration but not traversal of the lipid bilayer. Here, we show that the FP from the paramyxovirus parainfluenza virus 5 fusogenic protein, F, forms an N-terminal TM helix, which self-associates into a hexameric bundle. This FP also interacts strongly with the C-term-TM helix. Thus, the fusogenic F protein resembles SNARE proteins involved in vesicle fusion by having water-soluble coiled coils that zipper during fusion and TM helices in both membranes. By analogy to mechanosensitive channels, the force associated with zippering of the water-soluble coiled-coil domain is expected to lead to tilting of the FP helices, promoting interaction with the C-term-TM helices. The energetically unfavorable dehydration of lipid headgroups of opposing bilayers is compensated by thermodynamically favorable interactions between the FP and C-term-TM helices as the coiled coils zipper into the membrane phase, leading to a pore lined by both lipid and protein.

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Year:  2011        PMID: 21321234      PMCID: PMC3054033          DOI: 10.1073/pnas.1019668108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  78 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  Structural basis for paramyxovirus-mediated membrane fusion.

Authors:  K A Baker; R E Dutch; R A Lamb; T S Jardetzky
Journal:  Mol Cell       Date:  1999-03       Impact factor: 17.970

Review 3.  How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles.

Authors:  William F DeGrado; Holly Gratkowski; James D Lear
Journal:  Protein Sci       Date:  2003-04       Impact factor: 6.725

4.  Transmembrane glycine zippers: physiological and pathological roles in membrane proteins.

Authors:  Sanguk Kim; Tae-Joon Jeon; Amit Oberai; Duan Yang; Jacob J Schmidt; James U Bowie
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-22       Impact factor: 11.205

5.  Structure and topology of the influenza virus fusion peptide in lipid bilayers.

Authors:  J Lüneberg; I Martin; F Nüssler; J M Ruysschaert; A Herrmann
Journal:  J Biol Chem       Date:  1995-11-17       Impact factor: 5.157

6.  Role of the fusion peptide sequence in initial stages of influenza hemagglutinin-induced cell fusion.

Authors:  C Schoch; R Blumenthal
Journal:  J Biol Chem       Date:  1993-05-05       Impact factor: 5.157

7.  Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions.

Authors:  A Senes; M Gerstein; D M Engelman
Journal:  J Mol Biol       Date:  2000-02-25       Impact factor: 5.469

8.  Determination of membrane protein stability via thermodynamic coupling of folding to thiol-disulfide interchange.

Authors:  Lidia Cristian; James D Lear; William F DeGrado
Journal:  Protein Sci       Date:  2003-08       Impact factor: 6.725

9.  Interaction of the HIV-1 fusion peptide with phospholipid vesicles: different structural requirements for fusion and leakage.

Authors:  J L Nieva; S Nir; A Muga; F M Goñi; J Wilschut
Journal:  Biochemistry       Date:  1994-03-22       Impact factor: 3.162

10.  Structure of the Ebola fusion peptide in a membrane-mimetic environment and the interaction with lipid rafts.

Authors:  Mônica S Freitas; Luciane P Gaspar; Marcos Lorenzoni; Fabio C L Almeida; Luzineide W Tinoco; Marcius S Almeida; Lenize F Maia; Léo Degrève; Ana Paula Valente; Jerson L Silva
Journal:  J Biol Chem       Date:  2007-06-01       Impact factor: 5.157

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  40 in total

1.  The influenza hemagglutinin fusion domain is an amphipathic helical hairpin that functions by inducing membrane curvature.

Authors:  Sean T Smrt; Adrian W Draney; Justin L Lorieau
Journal:  J Biol Chem       Date:  2014-11-14       Impact factor: 5.157

2.  Capture and imaging of a prehairpin fusion intermediate of the paramyxovirus PIV5.

Authors:  Yong Ho Kim; Jason E Donald; Gevorg Grigoryan; George P Leser; Alexander Y Fadeev; Robert A Lamb; William F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-16       Impact factor: 11.205

3.  The paramyxovirus fusion protein C-terminal region: mutagenesis indicates an indivisible protein unit.

Authors:  Aarohi Zokarkar; Robert A Lamb
Journal:  J Virol       Date:  2011-12-14       Impact factor: 5.103

4.  The Interaction between Influenza HA Fusion Peptide and Transmembrane Domain Affects Membrane Structure.

Authors:  Alex L Lai; Jack H Freed
Journal:  Biophys J       Date:  2015-12-15       Impact factor: 4.033

5.  Oligomeric Structure and Three-Dimensional Fold of the HIV gp41 Membrane-Proximal External Region and Transmembrane Domain in Phospholipid Bilayers.

Authors:  Byungsu Kwon; Myungwoon Lee; Alan J Waring; Mei Hong
Journal:  J Am Chem Soc       Date:  2018-06-22       Impact factor: 15.419

6.  Trimeric transmembrane domain interactions in paramyxovirus fusion proteins: roles in protein folding, stability, and function.

Authors:  Everett Clinton Smith; Stacy E Smith; James R Carter; Stacy R Webb; Kathleen M Gibson; Lance M Hellman; Michael G Fried; Rebecca Ellis Dutch
Journal:  J Biol Chem       Date:  2013-10-31       Impact factor: 5.157

7.  A bundling of viral fusion mechanisms.

Authors:  Peter M Kasson; Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-28       Impact factor: 11.205

Review 8.  The accommodation index measures the perturbation associated with insertions and deletions in coiled-coils: Application to understand signaling in histidine kinases.

Authors:  Nathan W Schmidt; Gevorg Grigoryan; William F DeGrado
Journal:  Protein Sci       Date:  2017-02-23       Impact factor: 6.725

9.  A transmembrane domain and GxxxG motifs within L2 are essential for papillomavirus infection.

Authors:  Matthew P Bronnimann; Janice A Chapman; Chad K Park; Samuel K Campos
Journal:  J Virol       Date:  2012-10-24       Impact factor: 5.103

10.  Molecular dynamics simulations of homo-oligomeric bundles embedded within a lipid bilayer.

Authors:  Thuy Hien T Nguyen; Zhiwei Liu; Preston B Moore
Journal:  Biophys J       Date:  2013-10-01       Impact factor: 4.033

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