Literature DB >> 21320065

In-silico ADME models: a general assessment of their utility in drug discovery applications.

M Paul Gleeson1, Anne Hersey, Supa Hannongbua.   

Abstract

ADME prediction is an extremely challenging area as many of the properties we try to predict are a result of multiple physiological processes. In this review we consider how in-silico predictions of ADME processes can be used to help bias medicinal chemistry into more ideal areas of property space, minimizing the number of compounds needed to be synthesized to obtain the required biochemical/physico-chemical profile. While such models are not sufficiently accurate to act as a replacement for in-vivo or in-vitro methods, in-silico methods nevertheless can help us to understand the underlying physico-chemical dependencies of the different ADME properties, and thus can give us inspiration on how to optimize them. Many global in-silico ADME models (i.e generated on large, diverse datasets) have been reported in the literature. In this paper we selectively review representatives from each distinct class and discuss their relative utility in drug discovery. For each ADME parameter, we limit our discussion to the most recent, most predictive or most insightful examples in the literature to highlight the current state of the art. In each case we briefly summarize the different types of models available for each parameter (i.e simple rules, physico-chemical and 3D based QSAR predictions), their overall accuracy and the underlying SAR. We also discuss the utility of the models as related to lead generation and optimization phases of discovery research.

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Year:  2011        PMID: 21320065     DOI: 10.2174/156802611794480927

Source DB:  PubMed          Journal:  Curr Top Med Chem        ISSN: 1568-0266            Impact factor:   3.295


  27 in total

1.  DemQSAR: predicting human volume of distribution and clearance of drugs.

Authors:  Ozgur Demir-Kavuk; Jörg Bentzien; Ingo Muegge; Ernst-Walter Knapp
Journal:  J Comput Aided Mol Des       Date:  2011-11-20       Impact factor: 3.686

Review 2.  The influence of the 'organizational factor' on compound quality in drug discovery.

Authors:  Paul D Leeson; Stephen A St-Gallay
Journal:  Nat Rev Drug Discov       Date:  2011-09-30       Impact factor: 84.694

3.  Prediction of Metabolic Clearance for Low-Turnover Compounds Using Plated Hepatocytes with Enzyme Activity Correction.

Authors:  Bennett Ma; Roy Eisenhandler; Yuhsin Kuo; Paul Rearden; Ying Li; Peter J Manley; Sheri Smith; Karsten Menzel
Journal:  Eur J Drug Metab Pharmacokinet       Date:  2017-04       Impact factor: 2.441

4.  A probabilistic method to report predictions from a human liver microsomes stability QSAR model: a practical tool for drug discovery.

Authors:  Ignacio Aliagas; Alberto Gobbi; Timothy Heffron; Man-Ling Lee; Daniel F Ortwine; Mark Zak; S Cyrus Khojasteh
Journal:  J Comput Aided Mol Des       Date:  2015-02-24       Impact factor: 3.686

5.  Structure-aided drug development of potential neuraminidase inhibitors against pandemic H1N1 exploring alternate binding mechanism.

Authors:  Khushboo D Malbari; Anand S Chintakrindi; Lata R Ganji; Devanshi J Gohil; Sweta T Kothari; Mamata V Joshi; Meena A Kanyalkar
Journal:  Mol Divers       Date:  2019-02-01       Impact factor: 2.943

Review 6.  Software and resources for computational medicinal chemistry.

Authors:  Chenzhong Liao; Markus Sitzmann; Angelo Pugliese; Marc C Nicklaus
Journal:  Future Med Chem       Date:  2011-06       Impact factor: 3.808

7.  Computational tools and resources for metabolism-related property predictions. 1. Overview of publicly available (free and commercial) databases and software.

Authors:  Megan L Peach; Alexey V Zakharov; Ruifeng Liu; Angelo Pugliese; Gregory Tawa; Anders Wallqvist; Marc C Nicklaus
Journal:  Future Med Chem       Date:  2012-10       Impact factor: 3.808

8.  BACE1 and cholinesterase inhibitory activities of compounds from Cajanus cajan and Citrus reticulata: an in silico study.

Authors:  Kayode Ezekiel Adewole; Ahmed Adebayo Ishola
Journal:  In Silico Pharmacol       Date:  2021-01-23

9.  A new in vivo screening paradigm to accelerate antimalarial drug discovery.

Authors:  María Belén Jiménez-Díaz; Sara Viera; Javier Ibáñez; Teresa Mulet; Noemí Magán-Marchal; Helen Garuti; Vanessa Gómez; Lorena Cortés-Gil; Antonio Martínez; Santiago Ferrer; María Teresa Fraile; Félix Calderón; Esther Fernández; Leonard D Shultz; Didier Leroy; David M Wilson; José Francisco García-Bustos; Francisco Javier Gamo; Iñigo Angulo-Barturen
Journal:  PLoS One       Date:  2013-06-25       Impact factor: 3.240

10.  Cholinesterase inhibitory activity of tinosporide and 8-hydroxytinosporide isolated from Tinospora cordifolia: In vitro and in silico studies targeting management of Alzheimer's disease.

Authors:  Mohiminul Adib; Rashedul Islam; Monira Ahsan; Arifur Rahman; Mahmud Hossain; Md Mustafizur Rahman; Sultan M Alshehri; Mohsin Kazi; Md Abdul Mazid
Journal:  Saudi J Biol Sci       Date:  2021-03-30       Impact factor: 4.219

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