Literature DB >> 21317332

Genome sequence of Citromicrobium strain JLT1363, isolated from the South China Sea.

Qiang Zheng1, Rui Zhang, Nianzhi Jiao.   

Abstract

Citromicrobium is a member of the alpha-4 subcluster in the Alphaproteobacteria and is identified as a typical aerobic anoxygenic phototrophic bacterium (AAPB). Here we report the draft genome sequence of a non-AAPB strain, Citromicrobium sp. JLT1363. The genome sequence reveals a multimechanism of horizontal gene transfer, as well.

Entities:  

Mesh：

Substances：

Year:  2011        PMID： 21317332      PMCID： PMC3133042          DOI： 10.1128/JB.00121-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

1.  Formation of chromosomal tandem arrays of the SXT element and R391, two conjugative chromosomally integrating elements that share an attachment site.

Authors:  B Hochhut; J W Beaber; R Woodgate; M K Waldor
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

2.  Citromicrobium bathyomarinum, a novel aerobic bacterium isolated from deep-sea hydrothermal vent plume waters that contains photosynthetic pigment-protein complexes.

Authors:  V V Yurkov; S Krieger; E Stackebrandt; J T Beatty
Journal:  J Bacteriol       Date:  1999-08       Impact factor: 3.490

Review 3.  The current ICE age: biology and evolution of SXT-related integrating conjugative elements.

Authors:  Vincent Burrus; Joeli Marrero; Matthew K Waldor
Journal:  Plasmid       Date:  2006-03-13       Impact factor: 3.466

Review 4.  A genomic perspective on protein families.

Authors:  R L Tatusov; E V Koonin; D J Lipman
Journal:  Science       Date:  1997-10-24       Impact factor: 47.728

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Coexistence of two different photosynthetic operons in Citromicrobium bathyomarinum JL354 as revealed by whole-genome sequencing.

Authors:  Nianzhi Jiao; Rui Zhang; Qiang Zheng
Journal:  J Bacteriol       Date:  2009-12-04       Impact factor: 3.490

7.  R391: a conjugative integrating mosaic comprised of phage, plasmid, and transposon elements.

Authors:  Dietmar Böltner; Claire MacMahon; J Tony Pembroke; Peter Strike; A Mark Osborn
Journal:  J Bacteriol       Date:  2002-09       Impact factor: 3.490

8.  KEGG for linking genomes to life and the environment.

Authors:  Minoru Kanehisa; Michihiro Araki; Susumu Goto; Masahiro Hattori; Mika Hirakawa; Masumi Itoh; Toshiaki Katayama; Shuichi Kawashima; Shujiro Okuda; Toshiaki Tokimatsu; Yoshihiro Yamanishi
Journal:  Nucleic Acids Res       Date:  2007-12-12       Impact factor: 16.971

9.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2007-12-11       Impact factor: 16.971

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
View more
  6 in total

1.  Erythrobacter nanhaiensis sp. nov., A Novel Member of the Genus Erythrobacter Isolated from the South China Sea.

Authors:  Xiao Chen; Jihua Liu; Yongle Xu; Yanan Wang; Xiaojun Yan
Journal:  Curr Microbiol       Date:  2018-10-20       Impact factor: 2.188

2.  Genomic makeup of the marine flavobacterium Nonlabens (Donghaeana) dokdonensis and identification of a novel class of rhodopsins.

Authors:  Soon-Kyeong Kwon; Byung Kwon Kim; Ju Yeon Song; Min-Jung Kwak; Choong Hoon Lee; Jung-Hoon Yoon; Tae Kwang Oh; Jihyun F Kim
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

3.  Distribution and functions of TonB-dependent transporters in marine bacteria and environments: implications for dissolved organic matter utilization.

Authors:  Kai Tang; Nianzhi Jiao; Keshao Liu; Yao Zhang; Shuhui Li
Journal:  PLoS One       Date:  2012-07-19       Impact factor: 3.240

4.  Gain and loss of phototrophic genes revealed by comparison of two Citromicrobium bacterial genomes.

Authors:  Qiang Zheng; Rui Zhang; Paul C M Fogg; J Thomas Beatty; Yu Wang; Nianzhi Jiao
Journal:  PLoS One       Date:  2012-04-27       Impact factor: 3.240

5.  Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein.

Authors:  Thomas Riedel; Laura Gómez-Consarnau; Jürgen Tomasch; Madeleine Martin; Michael Jarek; José M González; Stefan Spring; Meike Rohlfs; Thorsten Brinkhoff; Heribert Cypionka; Markus Göker; Anne Fiebig; Johannes Klein; Alexander Goesmann; Jed A Fuhrman; Irene Wagner-Döbler
Journal:  PLoS One       Date:  2013-03-04       Impact factor: 3.240

6.  Diversity and functional analysis of light-driven pumping rhodopsins in marine Flavobacteria.

Authors:  Yong Min Kwon; So-Young Kim; Kwang-Hwan Jung; Sang-Jin Kim
Journal:  Microbiologyopen       Date:  2015-12-13       Impact factor: 3.139
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.