Literature DB >> 21315180

Advances in the computational development of DNA methyltransferase inhibitors.

José L Medina-Franco1, Thomas Caulfield.   

Abstract

DNA methylation is an epigenetic change that results in the addition of a methyl group at the carbon-5 position of cytosine residues. The process is mediated by DNA methyltransferases (DNMTs), a family of enzymes for which inhibition is a promising strategy for the treatment of cancer and other diseases. Here, we review the current status of the computational studies directed to rationalize, at the molecular level, the enzymatic activity of DNMT inhibitors. We also review successful virtual screenings to identify inhibitors with novel scaffolds as well as the emerging efforts to characterize the dynamic behavior of DNMTs. Thus, computational approaches form part of multidisciplinary efforts to further advance epigenetic therapies.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21315180     DOI: 10.1016/j.drudis.2011.02.003

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  21 in total

1.  Homology modeling, docking and structure-based pharmacophore of inhibitors of DNA methyltransferase.

Authors:  Jakyung Yoo; José L Medina-Franco
Journal:  J Comput Aided Mol Des       Date:  2011-06-10       Impact factor: 3.686

Review 2.  Modelling three-dimensional protein structures for applications in drug design.

Authors:  Tobias Schmidt; Andreas Bergner; Torsten Schwede
Journal:  Drug Discov Today       Date:  2013-11-08       Impact factor: 7.851

3.  DNA cytosine methylation: structural and thermodynamic characterization of the epigenetic marking mechanism.

Authors:  Jin Yang; Lee Lior-Hoffmann; Shenglong Wang; Yingkai Zhang; Suse Broyde
Journal:  Biochemistry       Date:  2013-04-12       Impact factor: 3.162

4.  Docking of a novel DNA methyltransferase inhibitor identified from high-throughput screening: insights to unveil inhibitors in chemical databases.

Authors:  José L Medina-Franco; Jakyung Yoo
Journal:  Mol Divers       Date:  2013-02-28       Impact factor: 2.943

Review 5.  Targeting epigenetic mechanisms and microRNAs by aspirin and other non steroidal anti-inflammatory agents--implications for cancer treatment and chemoprevention.

Authors:  Eugenia Yiannakopoulou
Journal:  Cell Oncol (Dordr)       Date:  2014-07-05       Impact factor: 6.730

6.  Epigenetic Modulations of Induced Pluripotent Stem Cells: Novel Therapies and Disease Models.

Authors:  Chengyang Huang; Joseph C Wu
Journal:  Drug Discov Today Dis Models       Date:  2012

Review 7.  Modulation of epigenetic targets for anticancer therapy: clinicopathological relevance, structural data and drug discovery perspectives.

Authors:  Federico Andreoli; Arménio Jorge Moura Barbosa; Marco Daniele Parenti; Alberto Del Rio
Journal:  Curr Pharm Des       Date:  2013       Impact factor: 3.310

Review 8.  Computer-aided Molecular Design of Compounds Targeting Histone Modifying Enzymes.

Authors:  Federico Andreoli; Alberto Del Rio
Journal:  Comput Struct Biotechnol J       Date:  2015-05-07       Impact factor: 7.271

9.  Design, synthesis and biological evaluation of 4-amino-N- (4-aminophenyl)benzamide analogues of quinoline-based SGI-1027 as inhibitors of DNA methylation.

Authors:  Elodie Rilova; Alexandre Erdmann; Christina Gros; Véronique Masson; Yannick Aussagues; Valérie Poughon-Cassabois; Arumugam Rajavelu; Albert Jeltsch; Yoann Menon; Natacha Novosad; Jean-Marc Gregoire; Stéphane Vispé; Philippe Schambel; Fréderic Ausseil; François Sautel; Paola B Arimondo; Frédéric Cantagrel
Journal:  ChemMedChem       Date:  2014-03       Impact factor: 3.466

10.  Rationalization of activity cliffs of a sulfonamide inhibitor of DNA methyltransferases with induced-fit docking.

Authors:  José L Medina-Franco; Oscar Méndez-Lucio; Jakyung Yoo
Journal:  Int J Mol Sci       Date:  2014-02-21       Impact factor: 5.923

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