Literature DB >> 21307943

Genomics: Genomes in three dimensions.

Monya Baker1.   

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Year:  2011        PMID： 21307943     DOI： 10.1038/470289a

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  20 in total

1.  Looping and interaction between hypersensitive sites in the active beta-globin locus.

Authors:  Bas Tolhuis; Robert Jan Palstra; Erik Splinter; Frank Grosveld; Wouter de Laat
Journal:  Mol Cell       Date:  2002-12       Impact factor: 17.970

2.  Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.

Authors:  Josée Dostie; Todd A Richmond; Ramy A Arnaout; Rebecca R Selzer; William L Lee; Tracey A Honan; Eric D Rubio; Anton Krumm; Justin Lamb; Chad Nusbaum; Roland D Green; Job Dekker
Journal:  Genome Res       Date:  2006-09-05       Impact factor: 9.043

3.  Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

Authors:  Zhihu Zhao; Gholamreza Tavoosidana; Mikael Sjölinder; Anita Göndör; Piero Mariano; Sha Wang; Chandrasekhar Kanduri; Magda Lezcano; Kuljeet Singh Sandhu; Umashankar Singh; Vinod Pant; Vijay Tiwari; Sreenivasulu Kurukuti; Rolf Ohlsson
Journal:  Nat Genet       Date:  2006-10-08       Impact factor: 38.330

4.  Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution.

Authors:  Irina Solovei; Moritz Kreysing; Christian Lanctôt; Süleyman Kösem; Leo Peichl; Thomas Cremer; Jochen Guck; Boris Joffe
Journal:  Cell       Date:  2009-04-17       Impact factor: 41.582

Review 5.  DamID: mapping of in vivo protein-genome interactions using tethered DNA adenine methyltransferase.

Authors:  Frauke Greil; Celine Moorman; Bas van Steensel
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

6.  Long-range chromatin regulatory interactions in vivo.

Authors:  David Carter; Lyubomira Chakalova; Cameron S Osborne; Yan-feng Dai; Peter Fraser
Journal:  Nat Genet       Date:  2002-11-11       Impact factor: 38.330

7.  Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome.

Authors:  Shin-ichi Horike; Shutao Cai; Masaru Miyano; Jan-Fang Cheng; Terumi Kohwi-Shigematsu
Journal:  Nat Genet       Date:  2004-12-19       Impact factor: 38.330

8.  An oestrogen-receptor-alpha-bound human chromatin interactome.

Authors:  Melissa J Fullwood; Mei Hui Liu; You Fu Pan; Jun Liu; Han Xu; Yusoff Bin Mohamed; Yuriy L Orlov; Stoyan Velkov; Andrea Ho; Poh Huay Mei; Elaine G Y Chew; Phillips Yao Hui Huang; Willem-Jan Welboren; Yuyuan Han; Hong Sain Ooi; Pramila N Ariyaratne; Vinsensius B Vega; Yanquan Luo; Peck Yean Tan; Pei Ye Choy; K D Senali Abayratna Wansa; Bing Zhao; Kar Sian Lim; Shi Chi Leow; Jit Sin Yow; Roy Joseph; Haixia Li; Kartiki V Desai; Jane S Thomsen; Yew Kok Lee; R Krishna Murthy Karuturi; Thoreau Herve; Guillaume Bourque; Hendrik G Stunnenberg; Xiaoan Ruan; Valere Cacheux-Rataboul; Wing-Kin Sung; Edison T Liu; Chia-Lin Wei; Edwin Cheung; Yijun Ruan
Journal:  Nature       Date:  2009-11-05       Impact factor: 49.962

9.  A three-dimensional model of the yeast genome.

Authors:  Zhijun Duan; Mirela Andronescu; Kevin Schutz; Sean McIlwain; Yoo Jung Kim; Choli Lee; Jay Shendure; Stanley Fields; C Anthony Blau; William S Noble
Journal:  Nature       Date:  2010-05-02       Impact factor: 49.962

10.  Myc dynamically and preferentially relocates to a transcription factory occupied by Igh.

Authors:  Cameron S Osborne; Lyubomira Chakalova; Jennifer A Mitchell; Alice Horton; Andrew L Wood; Daniel J Bolland; Anne E Corcoran; Peter Fraser
Journal:  PLoS Biol       Date:  2007-08       Impact factor: 8.029
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  12 in total

1.  The genome in space and time: does form always follow function? How does the spatial and temporal organization of a eukaryotic genome reflect and influence its functions?

Authors:  Zhijun Duan; Carl Anthony Blau
Journal:  Bioessays       Date:  2012-07-06       Impact factor: 4.345

2.  Analytic 3D imaging of mammalian nucleus at nanoscale using coherent x-rays and optical fluorescence microscopy.

Authors:  Changyong Song; Masatoshi Takagi; Jaehyun Park; Rui Xu; Marcus Gallagher-Jones; Naoko Imamoto; Tetsuya Ishikawa
Journal:  Biophys J       Date:  2014-09-02       Impact factor: 4.033

3.  Understanding spatial organizations of chromosomes via statistical analysis of Hi-C data.

Authors:  Ming Hu; Ke Deng; Zhaohui Qin; Jun S Liu
Journal:  Quant Biol       Date:  2013-06

4.  Centromeric motion facilitates the mobility of interphase genomic regions in fission yeast.

Authors:  Kyoung-Dong Kim; Hideki Tanizawa; Osamu Iwasaki; Christopher J Corcoran; Joseph R Capizzi; James E Hayden; Ken-Ichi Noma
Journal:  J Cell Sci       Date:  2013-08-28       Impact factor: 5.285

Review 5.  Bridging the resolution gap in structural modeling of 3D genome organization.

Authors:  Marc A Marti-Renom; Leonid A Mirny
Journal:  PLoS Comput Biol       Date:  2011-07-14       Impact factor: 4.475

Review 6.  The missing story behind Genome Wide Association Studies: single nucleotide polymorphisms in gene deserts have a story to tell.

Authors:  William Schierding; Wayne S Cutfield; Justin M O'Sullivan
Journal:  Front Genet       Date:  2014-02-18       Impact factor: 4.599

Review 7.  Genomic Architecture may Influence Recurrent Chromosomal Translocation Frequency in the Igh Locus.

Authors:  Amy L Kenter; Robert Wuerffel; Satyendra Kumar; Fernando Grigera
Journal:  Front Immunol       Date:  2013-12-30       Impact factor: 7.561

8.  A p53 enhancer region regulates target genes through chromatin conformations in cis and in trans.

Authors:  Nichole Link; Paula Kurtz; Melissa O'Neal; Gianella Garcia-Hughes; John M Abrams
Journal:  Genes Dev       Date:  2013-11-15       Impact factor: 11.361

9.  The duplicated genes database: identification and functional annotation of co-localised duplicated genes across genomes.

Authors:  Marion Ouedraogo; Charles Bettembourg; Anthony Bretaudeau; Olivier Sallou; Christian Diot; Olivier Demeure; Frédéric Lecerf
Journal:  PLoS One       Date:  2012-11-28       Impact factor: 3.240

Review 10.  Next-generation sequencing and epigenomics research: a hammer in search of nails.

Authors:  Shrutii Sarda; Sridhar Hannenhalli
Journal:  Genomics Inform       Date:  2014-03-31
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