| Literature DB >> 21303541 |
Rasmus K Madsen1, Torbjörn Lundstedt, Jon Gabrielsson, Carl-Johan Sennbro, Gerd-Marie Alenius, Thomas Moritz, Solbritt Rantapää-Dahlqvist, Johan Trygg.
Abstract
INTRODUCTION: The aim of this study was to assess the feasibility of diagnosing early rheumatoid arthritis (RA) by measuring selected metabolic biomarkers.Entities:
Mesh:
Year: 2011 PMID: 21303541 PMCID: PMC3241363 DOI: 10.1186/ar3243
Source DB: PubMed Journal: Arthritis Res Ther ISSN: 1478-6354 Impact factor: 5.156
Figure 1Overview of the metabolic profiling study. The figure lists the consecutive steps in this study that allowed the diagnosis of RA patients and the identification of discriminative metabolites. Details of analytical and data-processing procedures can be found in the supplementary information in Additional file 1.
Figure 2Multivariate prediction of diagnosis of patients and healthy controls based on metabolite patterns. (A) Box-and-whisker plot showing the prediction results from cross-validation in the study 1 rheumatoid arthritis (RA) versus control orthogonal projections to latent structures-discriminant analysis (OPLS-DA) model. Negative values correspond to controls and positive values indicate RA diagnoses (see Materials and methods). The blue outlined box denotes the median and 25% and 75% quartiles. The vertical black bars mark the median +1.5 times the interquartile range. (B) Prediction results for discrimination between RA and psoriatic arthritis patients using cross-validation. (C) Prediction results from the follow-up study. The model was built using study 1 data (52 metabolites and nine observations from each group).
Figure 3Metabolic patterns seen in patients and healthy controls. (A) Heat map showing the standard score for the each metabolite for each rheumatoid arthritis (RA) patient and each healthy control. The standard score shows how the concentration of each metabolite is related to the mean value of the control group for each individual. The standard score was calculated using the mean of the controls to attenuate the RA patients. Yellow color indicates that the metabolite is increased compared to the mean of the control group; red that it is decreased. Metabolites are sorted according to the correlation to RA in the RA versus control orthogonal projections to latent structures-discriminant analysis (OPLS-DA) model. The standard score is truncated to -2/2 for clarity. (B) Similar plot to Figure 3A, but showing RA and psoriatic arthritis (PsoA) patients. The standard score was calculated using the mean of the PsoA patients to attenuate the RA patients. Yellow color indicates that the metabolite is increased compared to the mean of the PsoA group; red that it is decreased. Metabolites are sorted according to the correlation to RA in the RA versus PsoA OPLS-DA model. The standard score is truncated to -2/2.
Metabolites found in different concentrations in RA patients and controls and in RA patients vs. PsoA patientsa
| RA relative to control | RA relative to PsoA | ||
|---|---|---|---|
| Increased | Increased | ||
| Glyceric acid | 0.029436 | Glutamine | 0.030049 |
| D-ribofuranose | 0.018080 | Heptanoic acid | 0.008232 |
| Hypoxanthine | 0.048579 | Succinate | 0.005375 |
| Pseudouridine | 0.030814 | ||
| Inosine | 0.032232 | ||
| Guanosine | 0.023726 | ||
| Arabitol | 0.004232 | ||
| Cystine | 0.009069 | ||
| Cysteine | 0.000118 | ||
| Phosphoric acid | 0.010883 | ||
| Decreased | Decreased | ||
| Histidine | 0.000109 | Aspartic acid | 0.000090 |
| Threonic acid | 0.000784 | Glutamic acid | 0.000248 |
| Methionine | 0.011428 | Glutamate | 0.001000 |
| Cholesterol | 0.023463 | Histidine | 0.007315 |
| Asparagine | 0.024166 | Serine | 0.008824 |
| Threonine | 0.046816 | Arachidonic acid | 0.038373 |
| Cholesterol | 0.027836 | ||
| Threonic acid | 0.002215 | ||
| 1-Monooleoylglycerol | 0.002369 | ||
aRA, rheumatoid arthritis; PsoA, psoriatic arthritis. P values are from the two-sided Student's t-test for samples with equal variance.