Literature DB >> 21279529

Adsorption mechanism of single guanine and thymine on single-walled carbon nanotubes.

Muthusivarajan Rajarajeswari1, Kombiah Iyakutti, Yoshiyuki Kawazoe.   

Abstract

Bio-nano hybrids introduce magnificent applications of nanomaterials to various fields. The choice of carbon nanotube as well as sequence selection of the nucleic acid bases play a crucial role in shaping DNA-carbon nanotube hybrids. To come up with a clear vision for the choice of carbon nanotube and nucleic acid bases to create bio-nano hybrids, we studied the adsorption mechanism of the nucleic acid bases guanine and thymine on four different types of nanotubes based on density functional theory. Nucleic acid bases exhibit differential binding strengths according to their structural geometry, inter-molecular distances, the carbon nanotube diameter, and charge transfer. The π-π interaction mechanism between the adsorbent and adsorbate is discussed in terms of charge density profile and electronic band structure analysis.

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Year:  2011        PMID: 21279529     DOI: 10.1007/s00894-010-0946-7

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  16 in total

1.  Structure-based carbon nanotube sorting by sequence-dependent DNA assembly.

Authors:  Ming Zheng; Anand Jagota; Michael S Strano; Adelina P Santos; Paul Barone; S Grace Chou; Bruce A Diner; Mildred S Dresselhaus; Robert S McLean; G Bibiana Onoa; Georgii G Samsonidze; Ellen D Semke; Monica Usrey; Dennis J Walls
Journal:  Science       Date:  2003-11-28       Impact factor: 47.728

2.  Atoms, molecules, solids, and surfaces: Applications of the generalized gradient approximation for exchange and correlation.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1992-09-15

3.  Noncovalent functionalization of carbon nanotubes for highly specific electronic biosensors.

Authors:  Robert J Chen; Sarunya Bangsaruntip; Katerina A Drouvalakis; Nadine Wong Shi Kam; Moonsub Shim; Yiming Li; Woong Kim; Paul J Utz; Hongjie Dai
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-15       Impact factor: 11.205

4.  First-principles study of physisorption of nucleic acid bases on small-diameter carbon nanotubes.

Authors:  S Gowtham; Ralph H Scheicher; Ravindra Pandey; Shashi P Karna; Rajeev Ahuja
Journal:  Nanotechnology       Date:  2008-02-21       Impact factor: 3.874

5.  DNA nucleoside interaction and identification with carbon nanotubes.

Authors:  Sheng Meng; Paul Maragakis; Costas Papaloukas; Efthimios Kaxiras
Journal:  Nano Lett       Date:  2007-01       Impact factor: 11.189

6.  DNA-assisted dispersion and separation of carbon nanotubes.

Authors:  Ming Zheng; Anand Jagota; Ellen D Semke; Bruce A Diner; Robert S McLean; Steve R Lustig; Raymond E Richardson; Nancy G Tassi
Journal:  Nat Mater       Date:  2003-05       Impact factor: 43.841

7.  Raman spectroscopy study and first-principles calculations of the interaction between nucleic acid bases and carbon nanotubes.

Authors:  Stepan G Stepanian; Maksym V Karachevtsev; Alexander Yu Glamazda; Victor A Karachevtsev; L Adamowicz
Journal:  J Phys Chem A       Date:  2009-04-16       Impact factor: 2.781

8.  Theoretical Evidence for the Stronger Ability of Thymine to Disperse SWCNT than Cytosine and Adenine: self-stacking of DNA bases vs their cross-stacking with SWCNT.

Authors:  Yixuan Wang
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2008       Impact factor: 4.126

9.  Simulation study of noncovalent hybridization of carbon nanotubes by single-stranded DNA in water.

Authors:  Willis Martin; Wusheng Zhu; Goran Krilov
Journal:  J Phys Chem B       Date:  2008-12-18       Impact factor: 2.991

10.  Biomimetic chemosensor: designing peptide recognition elements for surface functionalization of carbon nanotube field effect transistors.

Authors:  Zhifeng Kuang; Sang N Kim; Wendy J Crookes-Goodson; Barry L Farmer; Rajesh R Naik
Journal:  ACS Nano       Date:  2010-01-26       Impact factor: 15.881

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  4 in total

1.  A computational study on the role of noncovalent interactions in the stability of polymer/graphene nanocomposites.

Authors:  S Güryel; M Alonso; B Hajgató; Y Dauphin; G Van Lier; P Geerlings; F De Proft
Journal:  J Mol Model       Date:  2017-02-02       Impact factor: 1.810

2.  NH3 on a BC3 nanotube: effect of doping and decoration of aluminum.

Authors:  Ali Ahmadi Peyghan; Mohammad Bigdeli Tabar; Jamal Kakemam
Journal:  J Mol Model       Date:  2013-06-23       Impact factor: 1.810

3.  Molecular dynamics simulations of the orientation properties of cytochrome c on the surface of single-walled carbon nanotubes.

Authors:  Bing Zhang; Jia Xu; Shu-Fan Mo; Jian-Xi Yao; Song-Yuan Dai
Journal:  J Mol Model       Date:  2016-11-30       Impact factor: 1.810

4.  On the vibrational behavior of single- and double-walled carbon nanotubes under the physical adsorption of biomolecules in the aqueous environment: a molecular dynamics study.

Authors:  S Ajori; R Ansari; M Darvizeh
Journal:  J Mol Model       Date:  2016-02-22       Impact factor: 1.810

  4 in total

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