Literature DB >> 21267006

Hybridisation-based resequencing of 17 X-linked intellectual disability genes in 135 patients reveals novel mutations in ATRX, SLC6A8 and PQBP1.

Lars R Jensen1, Wei Chen, Bettina Moser, Bettina Lipkowitz, Christopher Schroeder, Luciana Musante, Andreas Tzschach, Vera M Kalscheuer, Ilaria Meloni, Martine Raynaud, Hilde van Esch, Jamel Chelly, Arjan P M de Brouwer, Anna Hackett, Sigrun van der Haar, Wolfram Henn, Jozef Gecz, Olaf Riess, Michael Bonin, Richard Reinhardt, Hans-Hilger Ropers, Andreas W Kuss.   

Abstract

X-linked intellectual disability (XLID), also known as X-linked mental retardation, is a highly genetically heterogeneous condition for which mutations in >90 different genes have been identified. In this study, we used a custom-made sequencing array based on the Affymetrix 50k platform for mutation screening in 17 known XLID genes in patients from 135 families and found eight single-nucleotide changes that were absent in controls. For four mutations affecting ATRX (p.1761M>T), PQBP1 (p.155R>X) and SLC6A8 (p.390P>L and p.477S>L), we provide evidence for a functional involvement of these changes in the aetiology of intellectual disability.

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Year:  2011        PMID: 21267006      PMCID: PMC3110040          DOI: 10.1038/ejhg.2010.244

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  16 in total

Review 1.  The epidemiology of mental retardation: challenges and opportunities in the new millennium.

Authors:  Helen Leonard; Xingyan Wen
Journal:  Ment Retard Dev Disabil Res Rev       Date:  2002

2.  Mutation frequencies of X-linked mental retardation genes in families from the EuroMRX consortium.

Authors:  Arjan P M de Brouwer; Helger G Yntema; Tjitske Kleefstra; Dorien Lugtenberg; Astrid R Oudakker; Bert B A de Vries; Hans van Bokhoven; Hilde Van Esch; Suzanne G M Frints; Guy Froyen; Jean-Pierre Fryns; Martine Raynaud; Marie-Pierre Moizard; Nathalie Ronce; Anissa Bensalem; Claude Moraine; Karine Poirier; Laetitia Castelnau; Yoann Saillour; Thierry Bienvenu; Chérif Beldjord; Vincent des Portes; Jamel Chelly; Gillian Turner; Tod Fullston; Jozef Gecz; Andreas W Kuss; Andreas Tzschach; Lars Riff Jensen; Steffen Lenzner; Vera M Kalscheuer; Hans-Hilger Ropers; Ben C J Hamel
Journal:  Hum Mutat       Date:  2007-02       Impact factor: 4.878

3.  Functional characterization of missense variants in the creatine transporter gene (SLC6A8): improved diagnostic application.

Authors:  Efraim H Rosenberg; Cristina Martínez Muñoz; Ofir T Betsalel; Silvy J M van Dooren; Matilde Fernandez; Cornelis Jakobs; Ton J deGrauw; Tjitske Kleefstra; Charles E Schwartz; Gajja S Salomons
Journal:  Hum Mutat       Date:  2007-09       Impact factor: 4.878

4.  High-throughput resequencing in the diagnosis of BRCA1/2 mutations using oligonucleotide resequencing microarrays.

Authors:  Christopher Schroeder; Fanny Stutzmann; Bernhard H F Weber; Olaf Riess; Michael Bonin
Journal:  Breast Cancer Res Treat       Date:  2009-11-26       Impact factor: 4.872

5.  Mutations in the polyglutamine binding protein 1 gene cause X-linked mental retardation.

Authors:  Vera M Kalscheuer; Kristine Freude; Luciana Musante; Lars R Jensen; Helger G Yntema; Jozef Gécz; Abdelaziz Sefiani; Kirsten Hoffmann; Bettina Moser; Stefan Haas; Ulf Gurok; Sebastian Haesler; Beatriz Aranda; Arpik Nshedjan; Andreas Tzschach; Nils Hartmann; Tim-Christoph Roloff; Sarah Shoichet; Olivier Hagens; Jiong Tao; Hans Van Bokhoven; Gillian Turner; Jamel Chelly; Claude Moraine; Jean-Pierre Fryns; Ulrike Nuber; Maria Hoeltzenbein; Constance Scharff; Harry Scherthan; Steffen Lenzner; Ben C J Hamel; Susann Schweiger; Hans-Hilger Ropers
Journal:  Nat Genet       Date:  2003-11-23       Impact factor: 38.330

6.  Creatine and guanidinoacetate: diagnostic markers for inborn errors in creatine biosynthesis and transport.

Authors:  Lígia S Almeida; Nanda M Verhoeven; Birthe Roos; Carla Valongo; Maria Luis Cardoso; Laura Vilarinho; Gajja S Salomons; Cornelis Jakobs
Journal:  Mol Genet Metab       Date:  2004-07       Impact factor: 4.797

7.  A DNA resequencing array for pathogenic mutation detection in hypertrophic cardiomyopathy.

Authors:  Siv Fokstuen; Robert Lyle; Analia Munoz; Corinne Gehrig; René Lerch; Andreas Perrot; Karl Josef Osterziel; Christian Geier; Maurice Beghetti; François Mach; Juan Sztajzel; Ulrich Sigwart; Stylianos E Antonarakis; Jean-Louis Blouin
Journal:  Hum Mutat       Date:  2008-06       Impact factor: 4.878

8.  High prevalence of SLC6A8 deficiency in X-linked mental retardation.

Authors:  Efraim H Rosenberg; Ligia S Almeida; Tjitske Kleefstra; Rose S deGrauw; Helger G Yntema; Nadia Bahi; Claude Moraine; Hans-Hilger Ropers; Jean-Pierre Fryns; Ton J deGrauw; Cornelis Jakobs; Gajja S Salomons
Journal:  Am J Hum Genet       Date:  2004-05-20       Impact factor: 11.025

9.  An overview of custom array sequencing.

Authors:  Prachi Kothiyal; Stephanie Cox; Jonathan Ebert; Bruce J Aronow; John H Greinwald; Heidi L Rehm
Journal:  Curr Protoc Hum Genet       Date:  2009-04

10.  A third MRX family (MRX68) is the result of mutation in the long chain fatty acid-CoA ligase 4 (FACL4) gene: proposal of a rapid enzymatic assay for screening mentally retarded patients.

Authors:  I Longo; S G M Frints; J-P Fryns; I Meloni; C Pescucci; F Ariani; M Borghgraef; M Raynaud; P Marynen; C Schwartz; A Renieri; G Froyen
Journal:  J Med Genet       Date:  2003-01       Impact factor: 6.318

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  10 in total

1.  Downregulation of the creatine transporter SLC6A8 by JAK2.

Authors:  Manzar Shojaiefard; Zohreh Hosseinzadeh; Shefalee K Bhavsar; Florian Lang
Journal:  J Membr Biol       Date:  2012-03-11       Impact factor: 1.843

2.  Rapid detection of gene mutations responsible for non-syndromic aortic aneurysm and dissection using two different methods: resequencing microarray technology and next-generation sequencing.

Authors:  Haruya Sakai; Shinichi Suzuki; Takeshi Mizuguchi; Kiyotaka Imoto; Yuki Yamashita; Hiroshi Doi; Masakazu Kikuchi; Yoshinori Tsurusaki; Hirotomo Saitsu; Noriko Miyake; Munetaka Masuda; Naomichi Matsumoto
Journal:  Hum Genet       Date:  2011-10-15       Impact factor: 4.132

3.  The XLID protein PQBP1 and the GTPase Dynamin 2 define a signaling link that orchestrates ciliary morphogenesis in postmitotic neurons.

Authors:  Yoshiho Ikeuchi; Luis de la Torre-Ubieta; Takahiko Matsuda; Hanno Steen; Hitoshi Okazawa; Azad Bonni
Journal:  Cell Rep       Date:  2013-08-29       Impact factor: 9.423

4.  Prioritizing genes for X-linked diseases using population exome data.

Authors:  Xiaoyan Ge; Pui-Yan Kwok; Joseph T C Shieh
Journal:  Hum Mol Genet       Date:  2014-09-12       Impact factor: 6.150

Review 5.  PQBP1: The Key to Intellectual Disability, Neurodegenerative Diseases, and Innate Immunity.

Authors:  Hikari Tanaka; Hitoshi Okazawa
Journal:  Int J Mol Sci       Date:  2022-06-02       Impact factor: 6.208

6.  Development of a high-throughput resequencing array for the detection of pathogenic mutations in osteogenesis imperfecta.

Authors:  Yao Wang; Yazhou Cui; Xiaoyan Zhou; Jinxiang Han
Journal:  PLoS One       Date:  2015-03-05       Impact factor: 3.240

7.  Mapping the landscape of tandem repeat variability by targeted long read single molecule sequencing in familial X-linked intellectual disability.

Authors:  Alena Zablotskaya; Hilde Van Esch; Kevin J Verstrepen; Guy Froyen; Joris R Vermeesch
Journal:  BMC Med Genomics       Date:  2018-12-19       Impact factor: 3.063

8.  X-linked mental retardation-hypotonic facies syndrome: Exome sequencing identifies novel clinical characteristics associated with c.5182G>C mutation in the ATRX gene.

Authors:  Fatemeh Shakarami; Mehdi Jahani; Zahra Nouri; Mohammad Amin Tabatabaiefar
Journal:  Mol Genet Genomic Med       Date:  2022-08-13       Impact factor: 2.473

9.  Novel ATRX gene damaging missense mutation c.6740A>C segregates with profound to severe intellectual deficiency without alpha thalassaemia.

Authors:  Habib Bouazzi; Seema Thakur; Carlos Trujillo; Mohammad Khalid Alwasiyah; Arnold Munnich
Journal:  Indian J Med Res       Date:  2016-01       Impact factor: 2.375

10.  Changes in the folding landscape of the WW domain provide a molecular mechanism for an inherited genetic syndrome.

Authors:  Encarna Pucheta-Martinez; Nicola D'Amelio; Moreno Lelli; Jorge L Martinez-Torrecuadrada; Marius Sudol; Giorgio Saladino; Francesco Luigi Gervasio
Journal:  Sci Rep       Date:  2016-07-26       Impact factor: 4.379

  10 in total

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