Literature DB >> 21266227

Discovery approaches to UPR in athero-susceptible endothelium in vivo.

Mete Civelek1, Elisabetta Manduchi, Gregory R Grant, Christian J Stoeckert, Peter F Davies.   

Abstract

The endothelium is a monolayer of cells that lines the entire inner surface of the cardiovascular and lymphatic circulations where it controls normal physiological functions through both systemic and local regulation. Endothelial phenotypes are heterogeneous, dynamic and malleable, properties that in large- and medium-sized arteries lead to a central role in the development of focal and regional atherosclerosis. The endothelial phenotype in athero-susceptible sites is different from that in nearby athero-resistant regions. Understanding the in vivo gene, protein, and metabolic expression profiles of susceptible endothelium is, therefore, an important spatiotemporal challenge in atherosclerosis research. Recent studies have demonstrated that endoplasmic reticulum (ER) stress and the UPR are characteristics of susceptible endothelium. Here, we outline global genomic profiling, pathway analyses, and gene connectivity approaches to the identification of UPR and associated pathways as discrete markers of athero-susceptibility in arterial endothelium.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21266227      PMCID: PMC3833809          DOI: 10.1016/B978-0-12-385116-1.00007-8

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  20 in total

1.  Coexisting proinflammatory and antioxidative endothelial transcription profiles in a disturbed flow region of the adult porcine aorta.

Authors:  Anthony G Passerini; Denise C Polacek; Congzhu Shi; Nadeene M Francesco; Elisabetta Manduchi; Gregory R Grant; William F Pritchard; Steven Powell; Gary Y Chang; Christian J Stoeckert; Peter F Davies
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-24       Impact factor: 11.205

2.  Amplified RNA synthesized from limited quantities of heterogeneous cDNA.

Authors:  R N Van Gelder; M E von Zastrow; A Yool; W C Dement; J D Barchas; J H Eberwine
Journal:  Proc Natl Acad Sci U S A       Date:  1990-03       Impact factor: 11.205

Review 3.  The endoplasmic reticulum and the unfolded protein response.

Authors:  Jyoti D Malhotra; Randal J Kaufman
Journal:  Semin Cell Dev Biol       Date:  2007-09-08       Impact factor: 7.727

4.  Integration of biological networks and gene expression data using Cytoscape.

Authors:  Melissa S Cline; Michael Smoot; Ethan Cerami; Allan Kuchinsky; Nerius Landys; Chris Workman; Rowan Christmas; Iliana Avila-Campilo; Michael Creech; Benjamin Gross; Kristina Hanspers; Ruth Isserlin; Ryan Kelley; Sarah Killcoyne; Samad Lotia; Steven Maere; John Morris; Keiichiro Ono; Vuk Pavlovic; Alexander R Pico; Aditya Vailaya; Peng-Liang Wang; Annette Adler; Bruce R Conklin; Leroy Hood; Martin Kuiper; Chris Sander; Ilya Schmulevich; Benno Schwikowski; Guy J Warner; Trey Ideker; Gary D Bader
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

5.  Chronic endoplasmic reticulum stress activates unfolded protein response in arterial endothelium in regions of susceptibility to atherosclerosis.

Authors:  Mete Civelek; Elisabetta Manduchi; Rebecca J Riley; Christian J Stoeckert; Peter F Davies
Journal:  Circ Res       Date:  2009-08-06       Impact factor: 17.367

6.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

7.  Sustained activation of XBP1 splicing leads to endothelial apoptosis and atherosclerosis development in response to disturbed flow.

Authors:  Lingfang Zeng; Anna Zampetaki; Andriana Margariti; Anna Elena Pepe; Saydul Alam; Daniel Martin; Qingzhong Xiao; Wen Wang; Zheng-Gen Jin; Gillian Cockerill; Kazutoshi Mori; Yi-Shuan Julie Li; Yanhua Hu; Shu Chien; Qingbo Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-01       Impact factor: 11.205

8.  GRP78 upregulation by atheroprone shear stress via p38-, alpha2beta1-dependent mechanism in endothelial cells.

Authors:  Ryan E Feaver; Nicole E Hastings; Andrew Pryor; Brett R Blackman
Journal:  Arterioscler Thromb Vasc Biol       Date:  2008-06-12       Impact factor: 8.311

Review 9.  Hemodynamic shear stress and the endothelium in cardiovascular pathophysiology.

Authors:  Peter F Davies
Journal:  Nat Clin Pract Cardiovasc Med       Date:  2008-11-25

10.  Gene network interconnectedness and the generalized topological overlap measure.

Authors:  Andy M Yip; Steve Horvath
Journal:  BMC Bioinformatics       Date:  2007-01-24       Impact factor: 3.169

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