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Literature DB >> 21258348

Protein folding: To knot or not to knot?

Eugene Shakhnovich.

Abstract

Mesh：

Substances：
Proteins

Year: 2011 PMID： 21258348 DOI： 10.1038/nmat2953

Source DB: PubMed Journal: Nat Mater ISSN： 1476-1122 Impact factor: 43.841

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12 in total

1. A deeply knotted protein structure and how it might fold.

Authors: W R Taylor
Journal: Nature Date: 2000-08-24 Impact factor: 49.962

2. Proteins with selected sequences fold into unique native conformation.

Authors:
Journal: Phys Rev Lett Date: 1994-06-13 Impact factor: 9.161

3. Structure and folding of a designed knotted protein.

Authors: Neil P King; Alex W Jacobitz; Michael R Sawaya; Lukasz Goldschmidt; Todd O Yeates
Journal: Proc Natl Acad Sci U S A Date: 2010-11-10 Impact factor: 11.205

4. A comparison of the folding of two knotted proteins: YbeA and YibK.

Authors: Anna L Mallam; Sophie E Jackson
Journal: J Mol Biol Date: 2006-11-10 Impact factor: 5.469

5. Dodging the crisis of folding proteins with knots.

Authors: Joanna I Sułkowska; Piotr Sułkowski; José Onuchic
Journal: Proc Natl Acad Sci U S A Date: 2009-02-11 Impact factor: 11.205

6. Exploring knotting mechanisms in protein folding.

Authors: Anna L Mallam; Elizabeth R Morris; Sophie E Jackson
Journal: Proc Natl Acad Sci U S A Date: 2008-11-17 Impact factor: 11.205

7. De novo protein design: fully automated sequence selection.

Authors: B I Dahiyat; S L Mayo
Journal: Science Date: 1997-10-03 Impact factor: 47.728

8. Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors: Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal: Science Date: 2009-10-09 Impact factor: 47.728

Review 5. The role of non-native interactions in the folding of knotted proteins: insights from molecular dynamics simulations.

Authors: Roberto Covino; Tatjana Skrbić; Silvio A Beccara; Pietro Faccioli; Cristian Micheletti
Journal: Biomolecules Date: 2013-12-24

5 in total

Protein folding: To knot or not to knot?

1. A deeply knotted protein structure and how it might fold.

2. Proteins with selected sequences fold into unique native conformation.

3. Structure and folding of a designed knotted protein.

4. A comparison of the folding of two knotted proteins: YbeA and YibK.

5. Dodging the crisis of folding proteins with knots.

6. Exploring knotting mechanisms in protein folding.

7. De novo protein design: fully automated sequence selection.

8. Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

9. Statistics of knots, geometry of conformations, and evolution of proteins.

10. Intricate knots in proteins: Function and evolution.

1. Conservation of complex knotting and slipknotting patterns in proteins.

2. Protein stabilization in a highly knotted protein polymer.

3. The role of non-native interactions in the folding of knotted proteins.

4. Complex lasso: new entangled motifs in proteins.

Review 5. The role of non-native interactions in the folding of knotted proteins: insights from molecular dynamics simulations.