Literature DB >> 21669955

Protein stabilization in a highly knotted protein polymer.

Tobias C Sayre1, Toni M Lee, Neil P King, Todd O Yeates.   

Abstract

The polypeptide backbones of a few proteins are tied in a knot. The biophysical effects and potential biological roles of knots are not well understood. Here, we test the consequences of protein knotting by taking a monomeric protein, carbonic anhydrase II, whose native structure contains a shallow knot, and polymerizing it end-to-end to form a deeply and multiply knotted polymeric filament. Thermal stability experiments show that the polymer is stabilized against loss of structure and aggregation by the presence of deep knots.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21669955      PMCID: PMC3165941          DOI: 10.1093/protein/gzr024

Source DB:  PubMed          Journal:  Protein Eng Des Sel        ISSN: 1741-0126            Impact factor:   1.650


  26 in total

1.  Probing nature's knots: the folding pathway of a knotted homodimeric protein.

Authors:  Anna L Mallam; Sophie E Jackson
Journal:  J Mol Biol       Date:  2006-05-02       Impact factor: 5.469

2.  A framework for describing topological frustration in models of protein folding.

Authors:  Todd S Norcross; Todd O Yeates
Journal:  J Mol Biol       Date:  2006-07-29       Impact factor: 5.469

3.  The folding mechanics of a knotted protein.

Authors:  Stefan Wallin; Konstantin B Zeldovich; Eugene I Shakhnovich
Journal:  J Mol Biol       Date:  2007-02-22       Impact factor: 5.469

Review 4.  Knotted and topologically complex proteins as models for studying folding and stability.

Authors:  Todd O Yeates; Todd S Norcross; Neil P King
Journal:  Curr Opin Chem Biol       Date:  2007-11-09       Impact factor: 8.822

5.  Identification of rare slipknots in proteins and their implications for stability and folding.

Authors:  Neil P King; Eric O Yeates; Todd O Yeates
Journal:  J Mol Biol       Date:  2007-08-02       Impact factor: 5.469

Review 6.  How does a knotted protein fold?

Authors:  Anna L Mallam
Journal:  FEBS J       Date:  2008-12-10       Impact factor: 5.542

7.  Tightening the knot in phytochrome by single-molecule atomic force microscopy.

Authors:  Thomas Bornschlögl; David M Anstrom; Elisabeth Mey; Joachim Dzubiella; Matthias Rief; Katrina T Forest
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

8.  Knotted fusion proteins reveal unexpected possibilities in protein folding.

Authors:  Anna L Mallam; Shimobi C Onuoha; J Günter Grossmann; Sophie E Jackson
Journal:  Mol Cell       Date:  2008-06-06       Impact factor: 17.970

9.  Exploring knotting mechanisms in protein folding.

Authors:  Anna L Mallam; Elizabeth R Morris; Sophie E Jackson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-17       Impact factor: 11.205

Review 10.  Protein knots and fold complexity: some new twists.

Authors:  William R Taylor
Journal:  Comput Biol Chem       Date:  2007-03-24       Impact factor: 2.877

View more
  16 in total

1.  Conservation of complex knotting and slipknotting patterns in proteins.

Authors:  Joanna I Sułkowska; Eric J Rawdon; Kenneth C Millett; Jose N Onuchic; Andrzej Stasiak
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-08       Impact factor: 11.205

2.  An intramolecular lock facilitates folding and stabilizes the tertiary structure of Streptococcus mutans adhesin P1.

Authors:  Kyle P Heim; Paula J Crowley; Joanna R Long; Shweta Kailasan; Robert McKenna; L Jeannine Brady
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-20       Impact factor: 11.205

3.  Thermal Unthreading of the Lasso Peptides Astexin-2 and Astexin-3.

Authors:  Caitlin D Allen; Maria Y Chen; Alexander Y Trick; Dan Thanh Le; Andrew L Ferguson; A James Link
Journal:  ACS Chem Biol       Date:  2016-09-15       Impact factor: 5.100

4.  The exclusive effects of chaperonin on the behavior of proteins with 52 knot.

Authors:  Yani Zhao; Pawel Dabrowski-Tumanski; Szymon Niewieczerzal; Joanna I Sulkowska
Journal:  PLoS Comput Biol       Date:  2018-03-16       Impact factor: 4.475

5.  Hysteresis as a Marker for Complex, Overlapping Landscapes in Proteins.

Authors:  Benjamin T Andrews; Dominique T Capraro; Joanna I Sulkowska; José N Onuchic; Patricia A Jennings
Journal:  J Phys Chem Lett       Date:  2012-12-18       Impact factor: 6.475

6.  Effects of knots on protein folding properties.

Authors:  Miguel A Soler; Patrícia F N Faísca
Journal:  PLoS One       Date:  2013-09-04       Impact factor: 3.240

7.  How difficult is it to fold a knotted protein? In silico insights from surface-tethered folding experiments.

Authors:  Miguel A Soler; Patrícia F N Faísca
Journal:  PLoS One       Date:  2012-12-20       Impact factor: 3.240

Review 8.  Knotted proteins: A tangled tale of Structural Biology.

Authors:  Patrícia F N Faísca
Journal:  Comput Struct Biotechnol J       Date:  2015-08-19       Impact factor: 7.271

Review 9.  The role of non-native interactions in the folding of knotted proteins: insights from molecular dynamics simulations.

Authors:  Roberto Covino; Tatjana Skrbić; Silvio A Beccara; Pietro Faccioli; Cristian Micheletti
Journal:  Biomolecules       Date:  2013-12-24

10.  Design principles for rapid folding of knotted DNA nanostructures.

Authors:  Vid Kočar; John S Schreck; Slavko Čeru; Helena Gradišar; Nino Bašić; Tomaž Pisanski; Jonathan P K Doye; Roman Jerala
Journal:  Nat Commun       Date:  2016-02-18       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.