Literature DB >> 21258331

Label-free single-molecule detection of DNA-hybridization kinetics with a carbon nanotube field-effect transistor.

Sebastian Sorgenfrei1, Chien-yang Chiu, Ruben L Gonzalez, Young-Jun Yu, Philip Kim, Colin Nuckolls, Kenneth L Shepard.   

Abstract

Single-molecule measurements of biomolecules can provide information about the molecular interactions and kinetics that are hidden in ensemble measurements. However, there is a requirement for techniques with improved sensitivity and time resolution for use in exploring biomolecular systems with fast dynamics. Here, we report the detection of DNA hybridization at the single-molecule level using a carbon nanotube field-effect transistor. By covalently attaching a single-stranded probe DNA sequence to a point defect in a carbon nanotube, we are able to measure two-level fluctuations in the conductance of the nanotube in the presence of a complementary DNA target. The kinetics of the system are studied as a function of temperature, allowing the measurement of rate constants, melting curves and activation energies for different sequences and target concentrations. The kinetics demonstrate non-Arrhenius behaviour, in agreement with DNA hybridization experiments using fluorescence correlation spectroscopy. This technique is label-free and could be used to probe single-molecule dynamics at microsecond timescales.

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Year:  2011        PMID: 21258331      PMCID: PMC3783941          DOI: 10.1038/nnano.2010.275

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  35 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-15       Impact factor: 11.205

Review 2.  Facilitated target location in biological systems.

Authors:  P H von Hippel; O G Berg
Journal:  J Biol Chem       Date:  1989-01-15       Impact factor: 5.157

3.  Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited.

Authors:  Brian P English; Wei Min; Antoine M van Oijen; Kang Taek Lee; Guobin Luo; Hongye Sun; Binny J Cherayil; S C Kou; X Sunney Xie
Journal:  Nat Chem Biol       Date:  2005-12-25       Impact factor: 15.040

4.  Label-free, single-molecule detection with optical microcavities.

Authors:  Andrea M Armani; Rajan P Kulkarni; Scott E Fraser; Richard C Flagan; Kerry J Vahala
Journal:  Science       Date:  2007-07-05       Impact factor: 47.728

5.  Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation.

Authors:  Jingyi Fei; Pallav Kosuri; Daniel D MacDougall; Ruben L Gonzalez
Journal:  Mol Cell       Date:  2008-05-09       Impact factor: 17.970

6.  Stability of ribonucleic acid double-stranded helices.

Authors:  P N Borer; B Dengler; I Tinoco; O C Uhlenbeck
Journal:  J Mol Biol       Date:  1974-07-15       Impact factor: 5.469

7.  The biophysics of DNA hybridization with immobilized oligonucleotide probes.

Authors:  V Chan; D J Graves; S E McKenzie
Journal:  Biophys J       Date:  1995-12       Impact factor: 4.033

8.  Adsorption of poly(rA) on the carbon nanotube surface and its hybridization with poly(rU).

Authors:  Victor A Karachevtsev; Galyna O Gladchenko; Maksym V Karachevtsev; Vladimir A Valeev; Victor S Leontiev; Oksana S Lytvyn
Journal:  Chemphyschem       Date:  2008-10-06       Impact factor: 3.102

9.  Atomic structure of graphene on SiO2.

Authors:  Masa Ishigami; J H Chen; W G Cullen; M S Fuhrer; E D Williams
Journal:  Nano Lett       Date:  2007-05-11       Impact factor: 11.189

10.  Electrical detection of the temperature induced melting transition of a DNA hairpin covalently attached to gold interdigitated microelectrodes.

Authors:  Greg P Brewood; Yaswanth Rangineni; Daniel J Fish; Ashwini S Bhandiwad; David R Evans; Raj Solanki; Albert S Benight
Journal:  Nucleic Acids Res       Date:  2008-07-15       Impact factor: 16.971

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  67 in total

1.  Whole-object fluorescence lifetime setup for efficient non-imaging quantitative intracellular fluorophore measurements.

Authors:  Yaniv Namer; Lior Turgeman; Mordechai Deutsch; Dror Fixler
Journal:  J Fluoresc       Date:  2012-01-20       Impact factor: 2.217

Review 2.  Nano-Bioelectronics.

Authors:  Anqi Zhang; Charles M Lieber
Journal:  Chem Rev       Date:  2015-12-21       Impact factor: 60.622

3.  Detection of atomic spin labels in a lipid bilayer using a single-spin nanodiamond probe.

Authors:  Stefan Kaufmann; David A Simpson; Liam T Hall; Viktor Perunicic; Philipp Senn; Steffen Steinert; Liam P McGuinness; Brett C Johnson; Takeshi Ohshima; Frank Caruso; Jörg Wrachtrup; Robert E Scholten; Paul Mulvaney; Lloyd Hollenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-17       Impact factor: 11.205

4.  Bayesian-Estimated Hierarchical HMMs Enable Robust Analysis of Single-Molecule Kinetic Heterogeneity.

Authors:  Jason Hon; Ruben L Gonzalez
Journal:  Biophys J       Date:  2019-04-02       Impact factor: 4.033

5.  Receptor-Ligand Rebinding Kinetics in Confinement.

Authors:  Aykut Erbaş; Monica Olvera de la Cruz; John F Marko
Journal:  Biophys J       Date:  2019-04-05       Impact factor: 4.033

6.  Quantitative interferometric reflectance imaging for the detection and measurement of biological nanoparticles.

Authors:  Derin Sevenler; Oğuzhan Avci; M Selim Ünlü
Journal:  Biomed Opt Express       Date:  2017-05-17       Impact factor: 3.732

7.  Carbon Nanotube Chemical Sensors.

Authors:  Vera Schroeder; Suchol Savagatrup; Maggie He; Sibo Lin; Timothy M Swager
Journal:  Chem Rev       Date:  2018-09-18       Impact factor: 60.622

8.  Integrated nanopore sensing platform with sub-microsecond temporal resolution.

Authors:  Jacob K Rosenstein; Meni Wanunu; Christopher A Merchant; Marija Drndic; Kenneth L Shepard
Journal:  Nat Methods       Date:  2012-03-18       Impact factor: 28.547

9.  Dissecting single-molecule signal transduction in carbon nanotube circuits with protein engineering.

Authors:  Yongki Choi; Tivoli J Olsen; Patrick C Sims; Issa S Moody; Brad L Corso; Mytrang N Dang; Gregory A Weiss; Philip G Collins
Journal:  Nano Lett       Date:  2013-01-24       Impact factor: 11.189

10.  Observing lysozyme's closing and opening motions by high-resolution single-molecule enzymology.

Authors:  Maxim V Akhterov; Yongki Choi; Tivoli J Olsen; Patrick C Sims; Mariam Iftikhar; O Tolga Gul; Brad L Corso; Gregory A Weiss; Philip G Collins
Journal:  ACS Chem Biol       Date:  2015-03-20       Impact factor: 5.100

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