Literature DB >> 21256236

DTI registration in atlas based fiber analysis of infantile Krabbe disease.

Yi Wang1, Aditya Gupta, Zhexing Liu, Hui Zhang, Maria L Escolar, John H Gilmore, Sylvain Gouttard, Pierre Fillard, Eric Maltbie, Guido Gerig, Martin Styner.   

Abstract

In recent years, diffusion tensor imaging (DTI) has become the modality of choice to investigate white matter pathology in the developing brain. To study neonate Krabbe disease with DTI, we evaluate the performance of linear and non-linear DTI registration algorithms for atlas based fiber tract analysis. The DTI scans of 10 age-matched neonates with infantile Krabbe disease are mapped into an atlas for the analysis of major fiber tracts - the genu and splenium of the corpus callosum, the internal capsules tracts and the uncinate fasciculi. The neonate atlas is based on 377 healthy control subjects, generated using an unbiased diffeomorphic atlas building method. To evaluate the performance of one linear and seven nonlinear commonly used registration algorithms for DTI we propose the use of two novel evaluation metrics: a regional matching quality criterion incorporating the local tensor orientation similarity, and a fiber property profile based metric using normative correlation. Our experimental results indicate that the whole tensor based registration method within the DTI-ToolKit (DTI-TK) shows the best performance for our application.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21256236      PMCID: PMC3062693          DOI: 10.1016/j.neuroimage.2011.01.038

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  31 in total

1.  Nonrigid registration using free-form deformations: application to breast MR images.

Authors:  D Rueckert; L I Sonoda; C Hayes; D L Hill; M O Leach; D J Hawkes
Journal:  IEEE Trans Med Imaging       Date:  1999-08       Impact factor: 10.048

2.  Fiber tract-based atlas of human white matter anatomy.

Authors:  Setsu Wakana; Hangyi Jiang; Lidia M Nagae-Poetscher; Peter C M van Zijl; Susumu Mori
Journal:  Radiology       Date:  2003-11-26       Impact factor: 11.105

3.  3 Tesla magnetic resonance imaging of the brain in newborns.

Authors:  John H Gilmore; Guihua Zhai; Kathy Wilber; J Keith Smith; Weili Lin; Guido Gerig
Journal:  Psychiatry Res       Date:  2004-11-15       Impact factor: 3.222

4.  Fast tensor image morphing for elastic registration.

Authors:  Pew-Thian Yap; Guorong Wu; Hongtu Zhu; Weili Lin; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

Review 5.  Quantitative analysis of diffusion tensor imaging data in serial assessment of Krabbe disease.

Authors:  James M Provenzale; Maria Escolar; Joanne Kurtzberg
Journal:  Ann N Y Acad Sci       Date:  2005-12       Impact factor: 5.691

6.  Large deformation diffeomorphic metric mapping of vector fields.

Authors:  Yan Cao; Michael I Miller; Raimond L Winslow; Laurent Younes
Journal:  IEEE Trans Med Imaging       Date:  2005-09       Impact factor: 10.048

7.  Log-Euclidean metrics for fast and simple calculus on diffusion tensors.

Authors:  Vincent Arsigny; Pierre Fillard; Xavier Pennec; Nicholas Ayache
Journal:  Magn Reson Med       Date:  2006-08       Impact factor: 4.668

8.  Insight into efficient image registration techniques and the demons algorithm.

Authors:  Tom Vercauteren; Xavier Pennec; Ezio Malis; Aymeric Perchant; Nicholas Ayache
Journal:  Inf Process Med Imaging       Date:  2007

9.  Diffeomorphic demons: efficient non-parametric image registration.

Authors:  Tom Vercauteren; Xavier Pennec; Aymeric Perchant; Nicholas Ayache
Journal:  Neuroimage       Date:  2008-11-07       Impact factor: 6.556

10.  A structural MRI study of human brain development from birth to 2 years.

Authors:  Rebecca C Knickmeyer; Sylvain Gouttard; Chaeryon Kang; Dianne Evans; Kathy Wilber; J Keith Smith; Robert M Hamer; Weili Lin; Guido Gerig; John H Gilmore
Journal:  J Neurosci       Date:  2008-11-19       Impact factor: 6.167

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  63 in total

1.  Gut microbiome populations are associated with structure-specific changes in white matter architecture.

Authors:  Irene M Ong; Jose G Gonzalez; Sean J McIlwain; Emily A Sawin; Andrew J Schoen; Nagesh Adluru; Andrew L Alexander; John-Paul J Yu
Journal:  Transl Psychiatry       Date:  2018-01-10       Impact factor: 6.222

2.  Longitudinal white matter microstructural change in Parkinson's disease.

Authors:  Vincent Pozorski; Jennifer M Oh; Nagesh Adluru; Andrew P Merluzzi; Frances Theisen; Ozioma Okonkwo; Amy Barzgari; Stephanie Krislov; Jitka Sojkova; Barbara B Bendlin; Sterling C Johnson; Andrew L Alexander; Catherine L Gallagher
Journal:  Hum Brain Mapp       Date:  2018-06-27       Impact factor: 5.038

3.  Refractory diet-dependent changes in neural microstructure: Implications for microstructural endophenotypes of neurologic and psychiatric disease.

Authors:  Maribel Torres-Velázquez; Emily A Sawin; Jacqueline M Anderson; John-Paul J Yu
Journal:  Magn Reson Imaging       Date:  2019-02-15       Impact factor: 2.546

Review 4.  Acquisition guidelines and quality assessment tools for analyzing neonatal diffusion tensor MRI data.

Authors:  A M Heemskerk; A Leemans; A Plaisier; K Pieterman; M H Lequin; J Dudink
Journal:  AJNR Am J Neuroradiol       Date:  2013-03-21       Impact factor: 3.825

5.  A diffusion tensor brain template for rhesus macaques.

Authors:  Nagesh Adluru; Hui Zhang; Andrew S Fox; Steven E Shelton; Chad M Ennis; Anne M Bartosic; Jonathan A Oler; Do P M Tromp; Elizabeth Zakszewski; James C Gee; Ned H Kalin; Andrew L Alexander
Journal:  Neuroimage       Date:  2011-07-26       Impact factor: 6.556

6.  Reproducibility of diffusion tensor imaging in normal subjects: an evaluation of different gradient sampling schemes and registration algorithm.

Authors:  Xin Liu; Yong Yang; Jubao Sun; Gang Yu; Jin Xu; Chen Niu; Hongjun Tian; Pan Lin
Journal:  Neuroradiology       Date:  2014-03-08       Impact factor: 2.804

7.  Development of a high angular resolution diffusion imaging human brain template.

Authors:  Anna Varentsova; Shengwei Zhang; Konstantinos Arfanakis
Journal:  Neuroimage       Date:  2014-01-15       Impact factor: 6.556

8.  Fiber feature map based landmark initialization for highly deformable DTI registration.

Authors:  Aditya Gupta; Matthew Toews; Ravikiran Janardhana; Yogesh Rathi; John Gilmore; Maria Escolar; Martin Styner
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2013-03-13

9.  Role of standardized and study-specific human brain diffusion tensor templates in inter-subject spatial normalization.

Authors:  Shengwei Zhang; Konstantinos Arfanakis
Journal:  J Magn Reson Imaging       Date:  2012-10-03       Impact factor: 4.813

10.  Early neglect is associated with alterations in white matter integrity and cognitive functioning.

Authors:  Jamie L Hanson; Nagesh Adluru; Moo K Chung; Andrew L Alexander; Richard J Davidson; Seth D Pollak
Journal:  Child Dev       Date:  2013-03-10
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