Literature DB >> 21256016

Redox-responsive zinc finger fidelity switch in homing endonuclease and intron promiscuity in oxidative stress.

Justin B Robbins1, Dorie Smith, Marlene Belfort.   

Abstract

It is well understood how mobile introns home to allelic sites, but how they are stimulated to transpose to ectopic locations on an evolutionary timescale is unclear. Here we show that a group I intron can move to degenerate sites under oxidizing conditions. The phage T4 td intron endonuclease, I-TevI, is responsible for this infidelity. We demonstrate that I-TevI, which promotes mobility and is subject to autorepression and translational control, is also regulated posttranslationally by a redox mechanism. Redox regulation is exercised by a zinc finger (ZF) in a linker that connects the catalytic domain of I-TevI to the DNA binding domain. Four cysteines coordinate Zn(2+) in the ZF, which ensures that I-TevI cleaves its DNA substrate at a fixed distance, 23-25 nucleotides upstream of the intron insertion site. We show that the fidelity of I-TevI cleavage is controlled by redox-responsive Zn(2+) cycling. When the ZF is mutated, or after exposure of the wild-type I-TevI to H(2)O(2), intron homing to degenerate sites is increased, likely because of indiscriminate DNA cleavage. These results suggest a mechanism for rapid intron dispersal, joining recent descriptions of the activation of biomolecular processes by oxidative stress through cysteine chemistry.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21256016      PMCID: PMC3621118          DOI: 10.1016/j.cub.2011.01.008

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  36 in total

1.  Trans and cis requirements for intron mobility in a prokaryotic system.

Authors:  J Clyman; M Belfort
Journal:  Genes Dev       Date:  1992-07       Impact factor: 11.361

2.  Intron-encoded homing endonuclease I-TevI also functions as a transcriptional autorepressor.

Authors:  David R Edgell; Victoria Derbyshire; Patrick Van Roey; Stephen LaBonne; Matthew J Stanger; Zhong Li; Thomas M Boyd; David A Shub; Marlene Belfort
Journal:  Nat Struct Mol Biol       Date:  2004-09-07       Impact factor: 15.369

3.  Intron mobility in the T-even phages: high frequency inheritance of group I introns promoted by intron open reading frames.

Authors:  S M Quirk; D Bell-Pedersen; M Belfort
Journal:  Cell       Date:  1989-02-10       Impact factor: 41.582

4.  Coincidence of cleavage sites of intron endonuclease I-TevI and critical sequences of the host thymidylate synthase gene.

Authors:  David R Edgell; Matthew J Stanger; Marlene Belfort
Journal:  J Mol Biol       Date:  2004-11-05       Impact factor: 5.469

5.  I-TevI, the endonuclease encoded by the mobile td intron, recognizes binding and cleavage domains on its DNA target.

Authors:  D Bell-Pedersen; S M Quirk; M Bryk; M Belfort
Journal:  Proc Natl Acad Sci U S A       Date:  1991-09-01       Impact factor: 11.205

6.  Genes within genes: independent expression of phage T4 intron open reading frames and the genes in which they reside.

Authors:  J M Gott; A Zeeh; D Bell-Pedersen; K Ehrenman; M Belfort; D A Shub
Journal:  Genes Dev       Date:  1988-12       Impact factor: 11.361

7.  Characterization of a defective phage system for the analysis of bacteriophage T4 DNA replication origins.

Authors:  K N Kreuzer; B M Alberts
Journal:  J Mol Biol       Date:  1986-03-20       Impact factor: 5.469

8.  Functional analysis of multiple single-stranded DNA-binding proteins from Methanosarcina acetivorans and their effects on DNA synthesis by DNA polymerase BI.

Authors:  Justin B Robbins; Mary C Murphy; Bryan A White; Roderick I Mackie; Taekjip Ha; Isaac K O Cann
Journal:  J Biol Chem       Date:  2003-12-04       Impact factor: 5.157

9.  The td intron endonuclease I-TevI makes extensive sequence-tolerant contacts across the minor groove of its DNA target.

Authors:  M Bryk; S M Quirk; J E Mueller; N Loizos; C Lawrence; M Belfort
Journal:  EMBO J       Date:  1993-05       Impact factor: 11.598

10.  A redox switch in angiotensinogen modulates angiotensin release.

Authors:  Aiwu Zhou; Robin W Carrell; Michael P Murphy; Zhenquan Wei; Yahui Yan; Peter L D Stanley; Penelope E Stein; Fiona Broughton Pipkin; Randy J Read
Journal:  Nature       Date:  2010-10-06       Impact factor: 49.962

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  12 in total

Review 1.  Mobile self-splicing introns and inteins as environmental sensors.

Authors:  Marlene Belfort
Journal:  Curr Opin Microbiol       Date:  2017-05-05       Impact factor: 7.934

Review 2.  Regulatory control or oxidative damage? Proteomic approaches to interrogate the role of cysteine oxidation status in biological processes.

Authors:  Jason M Held; Bradford W Gibson
Journal:  Mol Cell Proteomics       Date:  2011-12-08       Impact factor: 5.911

Review 3.  Stress-Induced Mutagenesis, Gambler Cells, and Stealth Targeting Antibiotic-Induced Evolution.

Authors:  John P Pribis; Yin Zhai; P J Hastings; Susan M Rosenberg
Journal:  mBio       Date:  2022-06-06       Impact factor: 7.786

4.  Comparative analysis of the complete mitochondrial genomes of four cordyceps fungi.

Authors:  Can Zhong; Jian Jin; Rongrong Zhou; Hao Liu; Jing Xie; Dan Wan; Shengen Xiao; Shuihan Zhang
Journal:  Ecol Evol       Date:  2022-04-25       Impact factor: 3.167

5.  Stress-Induced Mutagenesis: Implications in Cancer and Drug Resistance.

Authors:  Devon M Fitzgerald; P J Hastings; Susan M Rosenberg
Journal:  Annu Rev Cancer Biol       Date:  2017-03

6.  Structural insights into the N-terminal GIY-YIG endonuclease activity of Arabidopsis glutaredoxin AtGRXS16 in chloroplasts.

Authors:  Xi Liu; Shian Liu; Yingang Feng; Jian-Zhong Liu; Yuling Chen; Khanh Pham; Haiteng Deng; Kendal D Hirschi; Xinquan Wang; Ninghui Cheng
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

Review 7.  Learning to live together: mutualism between self-splicing introns and their hosts.

Authors:  David R Edgell; Venkata R Chalamcharla; Marlene Belfort
Journal:  BMC Biol       Date:  2011-04-11       Impact factor: 7.431

8.  A Drosophila model identifies a critical role for zinc in mineralization for kidney stone disease.

Authors:  Thomas Chi; Man Su Kim; Sven Lang; Neelanjan Bose; Arnold Kahn; Lawrence Flechner; Sarah D Blaschko; Tiffany Zee; Gulinuer Muteliefu; Nichole Bond; Marysia Kolipinski; Sirine C Fakra; Neil Mandel; Joe Miller; Arvind Ramanathan; David W Killilea; Katja Brückner; Pankaj Kapahi; Marshall L Stoller
Journal:  PLoS One       Date:  2015-05-13       Impact factor: 3.240

9.  Bacterial group I introns: mobile RNA catalysts.

Authors:  Georg Hausner; Mohamed Hafez; David R Edgell
Journal:  Mob DNA       Date:  2014-03-10

10.  Polymorphism in Mitochondrial Group I Introns among Cryptococcus neoformans and Cryptococcus gattii Genotypes and Its Association with Drug Susceptibility.

Authors:  Felipe E E S Gomes; Thales D Arantes; José A L Fernandes; Leonardo C Ferreira; Héctor Romero; Sandra M G Bosco; Maria T B Oliveira; Gilda M B Del Negro; Raquel C Theodoro
Journal:  Front Microbiol       Date:  2018-02-06       Impact factor: 5.640

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