Literature DB >> 22159599

Regulatory control or oxidative damage? Proteomic approaches to interrogate the role of cysteine oxidation status in biological processes.

Jason M Held1, Bradford W Gibson.   

Abstract

Oxidation is a double-edged sword for cellular processes and its role in normal physiology, cancer and aging remains only partially understood. Although oxidative stress may disrupt biological function, oxidation-reduction (redox) reactions in a cell are often tightly regulated and play essential physiological roles. Cysteines lie at the interface between these extremes since the chemical properties that make specific thiols exquisitely redox-sensitive also predispose them to oxidative damage by reactive oxygen or nitrogen species during stress. Thus, these modifications can be either under reversible redox regulatory control or, alternatively, a result of reversible or irreversible oxidative damage. In either case, it has become increasingly important to assess the redox status of protein thiols since these modifications often impact such processes as catalytic activity, conformational alterations, or metal binding. To better understand the redox changes that accompany protein cysteine residues in complex biological systems, new experimental approaches have been developed to identify and characterize specific thiol modifications and/or changes in their overall redox status. In this review, we describe the recent technologies in redox proteomics that have pushed the boundaries for detecting and quantifying redox cysteine modifications in a cellular context. While there is no one-size-fits-all analytical solution, we highlight the rationale, strengths, and limitations of each technology in order to effectively apply them to specific biological questions. Several technological limitations still remain unsolved, however these approaches and future developments play an important role toward understanding the interplay between oxidative stress and redox signaling in health and disease.

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Year:  2011        PMID: 22159599      PMCID: PMC3322581          DOI: 10.1074/mcp.R111.013037

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  116 in total

Review 1.  Transcriptional control of human p53-regulated genes.

Authors:  Todd Riley; Eduardo Sontag; Patricia Chen; Arnold Levine
Journal:  Nat Rev Mol Cell Biol       Date:  2008-05       Impact factor: 94.444

Review 2.  Targeting lipophilic cations to mitochondria.

Authors:  Michael P Murphy
Journal:  Biochim Biophys Acta       Date:  2008-04-08

Review 3.  Redox-based regulation of signal transduction: principles, pitfalls, and promises.

Authors:  Yvonne M W Janssen-Heininger; Brooke T Mossman; Nicholas H Heintz; Henry J Forman; Balaraman Kalyanaraman; Toren Finkel; Jonathan S Stamler; Sue Goo Rhee; Albert van der Vliet
Journal:  Free Radic Biol Med       Date:  2008-03-27       Impact factor: 7.376

4.  Quantifying changes in the thiol redox proteome upon oxidative stress in vivo.

Authors:  Lars I Leichert; Florian Gehrke; Harini V Gudiseva; Tom Blackwell; Marianne Ilbert; Angela K Walker; John R Strahler; Philip C Andrews; Ursula Jakob
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-14       Impact factor: 11.205

5.  Quantitative analysis of redox-sensitive proteome with DIGE and ICAT.

Authors:  Cexiong Fu; Jun Hu; Tong Liu; Tetsuro Ago; Junichi Sadoshima; Hong Li
Journal:  J Proteome Res       Date:  2008-08-16       Impact factor: 4.466

6.  Regulated protein denitrosylation by cytosolic and mitochondrial thioredoxins.

Authors:  Moran Benhar; Michael T Forrester; Douglas T Hess; Jonathan S Stamler
Journal:  Science       Date:  2008-05-23       Impact factor: 47.728

7.  A chemical approach for detecting sulfenic acid-modified proteins in living cells.

Authors:  Khalilah G Reddie; Young Ho Seo; Wilson B Muse Iii; Stephen E Leonard; Kate S Carroll
Journal:  Mol Biosyst       Date:  2008-03-14

Review 8.  Thiol chemistry and specificity in redox signaling.

Authors:  Christine C Winterbourn; Mark B Hampton
Journal:  Free Radic Biol Med       Date:  2008-05-16       Impact factor: 7.376

9.  Nitrosylation of ISG15 prevents the disulfide bond-mediated dimerization of ISG15 and contributes to effective ISGylation.

Authors:  Fumihiko Okumura; Deborah J Lenschow; Dong-Er Zhang
Journal:  J Biol Chem       Date:  2008-07-07       Impact factor: 5.157

10.  A redox-dependent pathway for regulating class II HDACs and cardiac hypertrophy.

Authors:  Tetsuro Ago; Tong Liu; Peiyong Zhai; Wei Chen; Hong Li; Jeffery D Molkentin; Stephen F Vatner; Junichi Sadoshima
Journal:  Cell       Date:  2008-06-13       Impact factor: 41.582

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  44 in total

1.  Electrostatics of cysteine residues in proteins: parameterization and validation of a simple model.

Authors:  Freddie R Salsbury; Leslie B Poole; Jacquelyn S Fetrow
Journal:  Proteins       Date:  2012-08-21

2.  Proteomic identification and quantification of S-glutathionylation in mouse macrophages using resin-assisted enrichment and isobaric labeling.

Authors:  Dian Su; Matthew J Gaffrey; Jia Guo; Kayla E Hatchell; Rosalie K Chu; Therese R W Clauss; Joshua T Aldrich; Si Wu; Sam Purvine; David G Camp; Richard D Smith; Brian D Thrall; Wei-Jun Qian
Journal:  Free Radic Biol Med       Date:  2013-12-11       Impact factor: 7.376

Review 3.  Techniques for the analysis of cysteine sulfhydryls and oxidative protein folding.

Authors:  Chad R Borges; Nisha D Sherma
Journal:  Antioxid Redox Signal       Date:  2014-02-18       Impact factor: 8.401

Review 4.  Regulation of protein function and signaling by reversible cysteine S-nitrosylation.

Authors:  Neal Gould; Paschalis-Thomas Doulias; Margarita Tenopoulou; Karthik Raju; Harry Ischiropoulos
Journal:  J Biol Chem       Date:  2013-07-16       Impact factor: 5.157

Review 5.  Redox Systems Biology: Harnessing the Sentinels of the Cysteine Redoxome.

Authors:  Jason M Held
Journal:  Antioxid Redox Signal       Date:  2019-09-09       Impact factor: 8.401

6.  Quantitative in vivo redox sensors uncover oxidative stress as an early event in life.

Authors:  Daniela Knoefler; Maike Thamsen; Martin Koniczek; Nicholas J Niemuth; Ann-Kristin Diederich; Ursula Jakob
Journal:  Mol Cell       Date:  2012-07-19       Impact factor: 17.970

Review 7.  Proteomic approaches to quantify cysteine reversible modifications in aging and neurodegenerative diseases.

Authors:  Liqing Gu; Renã A S Robinson
Journal:  Proteomics Clin Appl       Date:  2016-11-11       Impact factor: 3.494

Review 8.  Cysteine oxidative posttranslational modifications: emerging regulation in the cardiovascular system.

Authors:  Heaseung S Chung; Sheng-Bing Wang; Vidya Venkatraman; Christopher I Murray; Jennifer E Van Eyk
Journal:  Circ Res       Date:  2013-01-18       Impact factor: 17.367

9.  Functional proteomics approaches for the identification of transnitrosylase and denitrosylase targets.

Authors:  Changgong Wu; Andrew Myles Parrott; Tong Liu; Annie Beuve; Hong Li
Journal:  Methods       Date:  2013-02-18       Impact factor: 3.608

10.  Protein flexibility and cysteine reactivity: influence of mobility on the H-bond network and effects on pKa prediction.

Authors:  Stefano M Marino
Journal:  Protein J       Date:  2014-08       Impact factor: 2.371

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