Literature DB >> 21248706

An introduction to worm lab: from culturing worms to mutagenesis.

Jyotiska Chaudhuri1, Manish Parihar, Andre Pires-daSilva.   

Abstract

This protocol describes procedures to maintain nematodes in the laboratory and how to mutagenize them using two alternative methods: ethyl methane sulfonate (EMS) and 4, 5', 8-trimethylpsoralen combined with ultraviolet light (TMP/UV). Nematodes are powerful biological systems for genetics studies because of their simple body plan and mating system, which is composed of self-fertilizing hermaphrodites and males that can generate hundreds of progeny per animal. Nematodes are maintained in agar plates containing a lawn of bacteria and can be easily transferred from one plate to another using a pick. EMS is an alkylating agent commonly used to induce point mutations and small deletions, while TMP/UV mainly induces deletions. Depending on the species of nematode being used, concentrations of EMS and TMP will have to be optimized. To isolate recessive mutations of the nematode Pristionchus pacificus, animals of the F2 generation were visually screened for phenotypes. To illustrate these methods, we mutagenized worms and looked for Uncoordinated (Unc), Dumpy (Dpy) and Transformer (Tra) mutants.

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Year:  2011        PMID: 21248706      PMCID: PMC3341104          DOI: 10.3791/2293

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  7 in total

Review 1.  Mutagenesis.

Authors:  P Anderson
Journal:  Methods Cell Biol       Date:  1995       Impact factor: 1.441

Review 2.  The art and design of genetic screens: caenorhabditis elegans.

Authors:  Erik M Jorgensen; Susan E Mango
Journal:  Nat Rev Genet       Date:  2002-05       Impact factor: 53.242

3.  Efficient isolation of targeted Caenorhabditis elegans deletion strains using highly thermostable restriction endonucleases and PCR.

Authors:  Aguan Wei; Alex Yuan; Gloria Fawcett; Alice Butler; Theodore Davis; Shuang-yong Xu; Lawrence Salkoff
Journal:  Nucleic Acids Res       Date:  2002-10-15       Impact factor: 16.971

4.  Isolation of mutations with dumpy-like phenotypes and of collagen genes in the nematode Pristionchus pacificus.

Authors:  Charlotte Kenning; Isabel Kipping; Ralf J Sommer
Journal:  Genesis       Date:  2004-11       Impact factor: 2.487

5.  Conservation of the global sex determination gene tra-1 in distantly related nematodes.

Authors:  André Pires-daSilva; Ralf J Sommer
Journal:  Genes Dev       Date:  2004-05-15       Impact factor: 11.361

6.  The genetics of Caenorhabditis elegans.

Authors:  S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

7.  Trimethylpsoralen induces small deletion mutations in Caenorhabditis elegans.

Authors:  M D Yandell; L G Edgar; W B Wood
Journal:  Proc Natl Acad Sci U S A       Date:  1994-02-15       Impact factor: 11.205

  7 in total
  16 in total

1.  Measuring Sperm Guidance and Motility within the Caenorhabditis elegans Hermaphrodite Reproductive Tract.

Authors:  Muhan Hu; Shara Legg; Michael A Miller
Journal:  J Vis Exp       Date:  2019-06-06       Impact factor: 1.355

2.  Methods for studying the mechanisms of action of antipsychotic drugs in Caenorhabditis elegans.

Authors:  Limin Hao; Edgar A Buttner
Journal:  J Vis Exp       Date:  2014-02-04       Impact factor: 1.355

3.  Optogenetic Random Mutagenesis Using Histone-miniSOG in C. elegans.

Authors:  Kentaro Noma; Yishi Jin
Journal:  J Vis Exp       Date:  2016-11-14       Impact factor: 1.355

4.  Measurement of Oxygen Consumption Rates in Intact Caenorhabditis elegans.

Authors:  Shaarika Sarasija; Kenneth R Norman
Journal:  J Vis Exp       Date:  2019-02-23       Impact factor: 1.355

5.  RNAi mediated gene knockdown and transgenesis by microinjection in the necromenic Nematode Pristionchus pacificus.

Authors:  Jessica K Cinkornpumin; Ray L Hong
Journal:  J Vis Exp       Date:  2011-10-16       Impact factor: 1.355

6.  Large-Scale Gravitaxis Assay of Caenorhabditis Dauer Larvae.

Authors:  Caroline Ackley; Lindsey Washiashi; Ruchira Krishnamurthy; Joel H Rothman
Journal:  J Vis Exp       Date:  2022-05-31       Impact factor: 1.424

7.  Measuring the Effect of Chemicals on the Growth and Reproduction of Caenorhabditis elegans.

Authors:  So Young Lee; Kyungsu Kang
Journal:  J Vis Exp       Date:  2017-10-05       Impact factor: 1.355

8.  A rapid protocol for integrating extrachromosomal arrays with high transmission rate into the C. elegans genome.

Authors:  Marie-Christine Mariol; Ludivine Walter; Stéphanie Bellemin; Kathrin Gieseler
Journal:  J Vis Exp       Date:  2013-12-09       Impact factor: 1.355

9.  In Vitro and In Vivo Detection of Mitophagy in Human Cells, C. Elegans, and Mice.

Authors:  Evandro F Fang; Konstantinos Palikaras; Nuo Sun; Elayne M Fivenson; Ryan D Spangler; Jesse S Kerr; Stephanie A Cordonnier; Yujun Hou; Eszter Dombi; Henok Kassahun; Nektarios Tavernarakis; Joanna Poulton; Hilde Nilsen; Vilhelm A Bohr
Journal:  J Vis Exp       Date:  2017-11-22       Impact factor: 1.355

10.  Foldamers reveal and validate therapeutic targets associated with toxic α-synuclein self-assembly.

Authors:  Jemil Ahmed; Tessa C Fitch; Courtney M Donnelly; Johnson A Joseph; Tyler D Ball; Mikaela M Bassil; Ahyun Son; Chen Zhang; Aurélie Ledreux; Scott Horowitz; Yan Qin; Daniel Paredes; Sunil Kumar
Journal:  Nat Commun       Date:  2022-04-27       Impact factor: 17.694

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