| Literature DB >> 21247504 |
Suresh Hedau1, Umesh Kumar, Showket Hussain, Shirish Shukla, Shailja Pande, Neeraj Jain, Abhishek Tyagi, Trivikram Deshpande, Dilafroze Bhat, Mohammad Muzaffar Mir, Sekhar Chakraborty, Y Mohan Singh, Rakesh Kumar, Kumaravel Somasundaram, Alok C Bharti, Bhudev C Das.
Abstract
BACKGROUND: Two clinically relevant high-risk HPV (HR-HPV) types 16 and 18 are etiologically associated with the development of cervical carcinoma and are also reported to be present in many other carcinomas in extra-genital organ sites. Presence of HPV has been reported in breast carcinoma which is the second most common cancer in India and is showing a fast rising trend in urban population. The two early genes E6 and E7 of HPV type 16 have been shown to immortalize breast epithelial cells in vitro, but the role of HPV infection in breast carcinogenesis is highly controversial. Present study has therefore been undertaken to analyze the prevalence of HPV infection in both breast cancer tissues and blood samples from a large number of Indian women with breast cancer from different geographic regions.Entities:
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Year: 2011 PMID: 21247504 PMCID: PMC3036645 DOI: 10.1186/1471-2407-11-27
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Distribution of breast biopsies and blood samples from the different regions of India
| Name of the Hospitals | Biopsies | Blood | Matched biopsy |
|---|---|---|---|
| Lok Nayak Hospital, New Delhi | 100 | - | - |
| Sher-I-Kashmir Institute of Medical Sciences, Srinagar, Jammu & Kashmir | 43 | 43 | 43 |
| Regional Institute of Medical Science, Imphal Assam Medical College, Dibrugarh Silchar Medical College, Silchar | 65 | 65 | 65 |
| Goa Medical College, Goa | - | 24 | - |
| Kidwai Memorial Institute of Oncology, Bangalore | 20 | 10 | 10 |
Figure 1(A-D) Quantity and quality of genomic DNA from breast cancer biopsy and PCR amplification of different regions of HPV genome. A: Estimation of quantity and quality of phenol-chloroform extracted genomic DNA from breast cancer biopsies as visualized on an ethidium bromide-stained 1% agarose gel. Lane M: Hind III-digested λ-DNA molecular weight marker. Lane 1-10: Genomic DNA samples from breast cancer biopsies. B: PCR amplification of HPV L-1 consensus sequences showing the amplimer of 450 bp along with β-globin of 268 bp. Lane M: Hae III-digested φ × 174 DNA molecular weight marker. Lane 1: positive control (HPV16 plasmid DNA), Lane 2: HPV16 positive cervical cancer biopsy DNA, Lane 3: Blood DNA from breast cancer patient, Lane 4: HPV negative cell line (C33a) DNA, Lane 5: MCF-7 cell DNA, Lane 6: HeLa cell DNA, Lanes 7-18: breast cancer biopsy DNA. All were positive for β-globin but none of them positive for HPV. C: PCR amplification of HPV16 E6 showing the amplimer of 503 bp along with β-globin of 268 bp. Lane M: Hae III-digested φ × 174 DNA molecular weight marker. Lane 1: positive control (HPV16 plasmid DNA), Lane 2: Cervical cancer DNA, Lane 3: Blood DNA from breast cancer patient, Lane 4: HPV negative cell line (C33a) DNA, Lane 5: MCF-7 cell DNA, Lane 6: Human placental DNA, Lane 7:SiHa cell DNA, Lanes 8-18: breast cancer biopsy DNA showing positivity for β-globin but negative for HPV. D: PCR amplification of HPV16 E7 showing the amplimer of 468 bp along with β-globin of 268 bp. Lane M: Hae III-digested φ × 174 DNA molecular weight marker. Lane 1: positive control (HPV16 plasmid DNA), Lane 2: Cervical cancer DNA, Lane 3: Blood DNA from breast cancer patient, Lane 4: HPV negative cell line (C33a) DNA, Lane 5: MCF-7 cell DNA, Lane 6: Human placental DNA, Lane 7:SiHa cell line DNA, Lane 8-18: breast cancer biopsy DNA showing positivity for β-globin but negative for HPV.
Oligonucleotide primer sequences used for the amplification of different regions of HPV and internal control.
| MY09 | 5'-GCM CAG GGW CAT AAY AAT GG-3' | L1 | 55 | 450 | [ |
| MY11 | 5'-CGT CCM ARR GGA WAC TGA TC-3' where M = A + C, W = A + T, Y = C + T, R = A + G). | ||||
| GP5+ | 5'-TTT GTT ACT GTG GTA GAT ACT AC-3' | L1 | 40 | 145 | [ |
| GP6+ | 5'-CTT ATA CTA AAT GTC AAA TAA AAA-3' | ||||
| HPV16 E6 (F) | 5'-GAA ACC GGT TAG TAT AAA AGC AGA C-3' | 53-78 | 55 | 503 | [ |
| HPV16 E6 (R) | 5'-AGC TGG GTT TCT CTA CGT GTT CT-3' | 557-533 | |||
| HPV16 E7 (F) | 5'-CAA TAA TAT AAG GGG TCG GTG GA-3' | 480-500 | 55 | 468 | |
| HPV16 E7 (R) | 5'-TTT TTC CAC TAC AGC CTC TAC AT-3' | 945-923 | [ | ||
| β-globin (F) | 5'-GAA GAG CCA AGG ACA GGT AC-3' | 4-23 | 55 | 268 | [ |
| β-globin (R) | 5'-CAA CTT CAT CCA CGT TAC ACC-3' | 273-256 | |||
| p53 Exon 5 (F) | 5'-TAC TCC CCT GCC CTC AAC AA-3' | 316-355 | 55 | 184 | [ |
| p53 Exon 5 (R) | 5'-CAT CGC TAT CTG AGC AGC GC-3' | 499-480 |
Detailed pathological classification and clinical stages of 252 breast cancer patients
| Pathological classification | Clinical stages |
|---|---|
| Infiltrating Ductal Carcinoma (IDC) (218) | Stage I (14) |
| Stage II (83) | |
| Stage III (114) | |
| Stage IV (7) | |
| Mixed IDC & mucinous (20) | Stage I (4) |
| Stage II (7) | |
| Stage III (8) | |
| Stage IV (1) | |
| Medulllary Invasive carcinoma (8) Papillay invasive carcinoma (6) | Stage II (4) |
| Stage III (5) | |
| Stage IV (5) | |
IDC; Infiltrating ductal carcinoma
Figure 2(A-D) Quantitative Real time PCR of HPV. Quantitative Real time PCR of GP5+/GP6+ to detect presence of HPV infection in blood and tumour biopsy DNA from breast cancer patients. Genomic DNA isolated from blood and tumour tissue biopsies from breast cancer patients were amplified using GP5+/GP6+ L1 consensus PCR primers using Biorad iQ SYBR Green supermix as described in Methods. Ten fold dilution series of WHO HPV16 international standards in the 4 log dynamic range (5 × 104-100) in C33a DNA diluents were used as reference for generation of standard curves. (A) DNA amplification; (B) Standard curve analysis showing efficiency of reaction and calculation of viral copy number; (C) Melt curve analysis showing specificity of HPV16 amplicon and (D) Post real time PCR electrophoresis run of standards and analyzed sample amplicons.
List of studies identified HPV DNA sequences in breast cancer tissues
| S. No. | Study report | Sample | Total | HPV16 | HPV18 | HPV16/18 | Other HPV | Country |
|---|---|---|---|---|---|---|---|---|
| 1 | Di Lonardo et al., 1992 | 70 | 7 (10) | 7 (100) | 0 | 0 | 0 | Italy |
| 2 | Henning et al., 1999 | 41 | 19(46.3) | 19 (100) | 0 | 0 | 0 | Sweden |
| 3. | Yu et al., 1999 | 72 | 19(26.3) | 0 | 0 | 0 | 19 (HPV 33) | China |
| 4. | Yu et al., 2000 | 32 | 14(43.8) | 0 | 0 | 0 | 14(HPV33) | China |
| 5. | Liu et al., 2004 | 17 | 6(35) | 3(50) | 1(17) | 0 | 0 | China |
| 6. | Damin et al., 2004 | 101 | 25(24.7) | 14(56) | 10(40) | 1(4) | 0 | Brazil |
| 7. | Widschwendter et al., 2004 | 11 | 7(63.7) | 7(100) | 0 | 0 | 0 | Austria |
| 8. | de Villiers et al., 2005 | 29 | 25(86.2) | 3(12) | 0 | 0 | 22(88) | USA |
| 9. | Kroupis et al., 2006 | 107 | 17(15.9) | 14(82.3) | 0 | 0 | 3(17.6) | Greece |
| 10. | Kan et al., 2005 | 50 | 24(48) | 0 | 24(100) | 0 | 0 | Australia |
| 11. | Gumus et al., 2006 | 50 | 37(74) | 0 | 20(54) | 0 | 35(94.6) | Turkey |
| 12. | Khan et al., 2008 | 124 | 26(20.9) | 26(100) | 0 | 0 | 0 | Japan |
| 13. | de Leon et al., 2009 | 51 | 15(29.5) | 10(66.7) | 3(20) | 2(13.3) | 0 | Mexico |
| 14. | Mendizabal-Ruiz et al., 2009 | 67 | 3(4) | 1(33.3) | 1(33.3) | 0 | 1(33.3) | Mexico |
| 15. | Heng et al., 2009 | 26 biopsies | 8 (30.7) | 1 (3.8) | 7 (26.9) | 0 | 0 | Australia |
| 9 cell lines | 2 (22) | 0 | 2 (22) | 0 | 0 |
List of studies that did not detect HPV DNA sequences in breast cancer tissues
| S. No | Study report | Sample | Total HPV | HPV16 | HPV18 | HPV16/18 | Other HPV | Country |
|---|---|---|---|---|---|---|---|---|
| 1 | Wrede et al., 1992 | 92 | 0 | 0 | 0 | 0 | 0 | UK |
| 2 | Bratthauer et al., 1992 | 43 | 0 | 0 | 0 | 0 | 0 | USA |
| 3. | Gopalkrishna et al., 1996 | 30 | 0 | 0 | 0 | 0 | 0 | India |
| 4. | Czerwenka et al., 1996 | 20 | 0 | 0 | 0 | 0 | 0 | Austria |
| 5. | Lindel et al., 2007 | 81 | 0 | 0 | 0 | 0 | 0 | Switzerland |
| 6. | de Cremoux et al., 2008 | 50 | 0 | 0 | 0 | 0 | 0 | France |
| 7. | Hedau et al. (Present study) | 252* | 0 | 0 | 0 | 0 | 0 | India |
* Country with both positive and negative results.