Literature DB >> 21245342

Structures of sequential open states in a symmetrical opening transition of the TolC exit duct.

Xue-Yuan Pei1, Philip Hinchliffe, Martyn F Symmons, Eva Koronakis, Roland Benz, Colin Hughes, Vassilis Koronakis.   

Abstract

In bacterial drug resistance and virulence pumps, an inner membrane (IM) transporter and periplasmic adaptor recruit an outer membrane (OM) trimeric TolC exit duct that projects an α-helical tunnel across the periplasm. The TolC periplasmic entrance is closed by densely packed α-helical coiled coils, inner H7/H8, and outer H3/H4, constrained by a hydrogen bond network. On recruitment, these coiled coils must undergo transition to the open state. We present 2.9 Å resolution crystal structures of two sequential TolC open states in which the network is incrementally disrupted and channel conductances defined in lipid bilayers. Superimposition of TolC(RS) (370 pS) and TolC(YFRS) (1,000 pS) on the TolC(WT) closed state (80 pS) showed that in the initial open-state TolC(RS), relaxation already causes approximately 14° twisting and expansion of helix H7 at the periplasmic tip, increasing interprotomer distances from 12.2 Å in TolC(WT) to 18.9 Å. However, in the crystal structure, the weakened Asp(374) pore constriction was maintained at the closed state 11.3 Å(2). In the advanced open-state TolC(YFRS), there was little further expansion at the tip, to interprotomer 21.3 Å, but substantial movement of inner and outer coiled coils dilated the pore constriction. In particular, upon abolition of the TolC(YFRS) intraprotomer Tyr(362)-Asp(153) link, a redirection of Tyr(362) and "bulge" in H3 allowed a simple movement outward of H8, establishing a 50.3 Å(2) opening. Root mean square deviations (rmsds) over the coiled coils of the three protomers of TolC(RS) and TolC(YFRS) illustrate that, whereas independent movement at the periplasmic tips may feature in the initial stages of opening, full dilation of the pore constriction is entirely symmetrical.

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Year:  2011        PMID: 21245342      PMCID: PMC3033246          DOI: 10.1073/pnas.1012588108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  Electrophysiological behavior of the TolC channel-tunnel in planar lipid bilayers.

Authors:  C Andersen; C Hughes; V Koronakis
Journal:  J Membr Biol       Date:  2002-02-05       Impact factor: 1.843

2.  Crystal structure of bacterial multidrug efflux transporter AcrB.

Authors:  Satoshi Murakami; Ryosuke Nakashima; Eiki Yamashita; Akihito Yamaguchi
Journal:  Nature       Date:  2002-10-10       Impact factor: 49.962

3.  Transition to the open state of the TolC periplasmic tunnel entrance.

Authors:  Christian Andersen; Eva Koronakis; Evert Bokma; Jeyanthy Eswaran; Daniel Humphreys; Colin Hughes; Vassilis Koronakis
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-05       Impact factor: 11.205

4.  Structural basis of multiple drug-binding capacity of the AcrB multidrug efflux pump.

Authors:  Edward W Yu; Gerry McDermott; Helen I Zgurskaya; Hiroshi Nikaido; Daniel E Koshland
Journal:  Science       Date:  2003-05-09       Impact factor: 47.728

5.  Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Authors:  Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson
Journal:  Proteins       Date:  2003-02-15

Review 6.  Structure and function of TolC: the bacterial exit duct for proteins and drugs.

Authors:  Vassilis Koronakis; Jeyanthy Eswaran; Colin Hughes
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

7.  Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions.

Authors:  David W Ritchie; Dima Kozakov; Sandor Vajda
Journal:  Bioinformatics       Date:  2008-06-30       Impact factor: 6.937

Review 8.  Structure, function and inhibition of RND efflux pumps in Gram-negative bacteria: an update.

Authors:  Jessica M A Blair; Laura J V Piddock
Journal:  Curr Opin Microbiol       Date:  2009-08-05       Impact factor: 7.934

9.  Direct interaction of multidrug efflux transporter AcrB and outer membrane channel TolC detected via site-directed disulfide cross-linking.

Authors:  Norihisa Tamura; Satoshi Murakami; Yoshiaki Oyama; Masaji Ishiguro; Akihito Yamaguchi
Journal:  Biochemistry       Date:  2005-08-23       Impact factor: 3.162

10.  A periplasmic coiled-coil interface underlying TolC recruitment and the assembly of bacterial drug efflux pumps.

Authors:  Sune Lobedanz; Evert Bokma; Martyn F Symmons; Eva Koronakis; Colin Hughes; Vassilis Koronakis
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-05       Impact factor: 11.205

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  33 in total

1.  Sequential mechanism of assembly of multidrug efflux pump AcrAB-TolC.

Authors:  Elena B Tikhonova; Yoichi Yamada; Helen I Zgurskaya
Journal:  Chem Biol       Date:  2011-04-22

2.  AcrB-AcrA Fusion Proteins That Act as Multidrug Efflux Transporters.

Authors:  Katsuhiko Hayashi; Ryosuke Nakashima; Keisuke Sakurai; Kimie Kitagawa; Seiji Yamasaki; Kunihiko Nishino; Akihito Yamaguchi
Journal:  J Bacteriol       Date:  2015-11-02       Impact factor: 3.490

Review 3.  Secretion systems in Gram-negative bacteria: structural and mechanistic insights.

Authors:  Tiago R D Costa; Catarina Felisberto-Rodrigues; Amit Meir; Marie S Prevost; Adam Redzej; Martina Trokter; Gabriel Waksman
Journal:  Nat Rev Microbiol       Date:  2015-06       Impact factor: 60.633

Review 4.  Molecular architecture of the bacterial tripartite multidrug efflux pump focusing on the adaptor bridging model.

Authors:  Saemee Song; Jin-Sik Kim; Kangseok Lee; Nam-Chul Ha
Journal:  J Microbiol       Date:  2015-05-30       Impact factor: 3.422

Review 5.  Type 1 Does the Two-Step: Type 1 Secretion Substrates with a Functional Periplasmic Intermediate.

Authors:  T Jarrod Smith; Holger Sondermann; George A O'Toole
Journal:  J Bacteriol       Date:  2018-08-24       Impact factor: 3.490

6.  Interaction between the α-barrel tip of Vibrio vulnificus TolC homologs and AcrA implies the adapter bridging model.

Authors:  Seunghwa Lee; Saemee Song; Minho Lee; Soonhye Hwang; Ji-Sun Kim; Nam-Chul Ha; Kangseok Lee
Journal:  J Microbiol       Date:  2014-02-01       Impact factor: 3.422

7.  Outer Membrane Permeability of Cyanobacterium Synechocystis sp. Strain PCC 6803: Studies of Passive Diffusion of Small Organic Nutrients Reveal the Absence of Classical Porins and Intrinsically Low Permeability.

Authors:  Hikaru Kowata; Saeko Tochigi; Hideyuki Takahashi; Seiji Kojima
Journal:  J Bacteriol       Date:  2017-09-05       Impact factor: 3.490

8.  Opening the Channel: the Two Functional Interfaces of Pseudomonas aeruginosa OpmH with the Triclosan Efflux Pump TriABC.

Authors:  Abigail T Ntreh; Jon W Weeks; Logan M Nickels; Helen I Zgurskaya
Journal:  J Bacteriol       Date:  2016-11-04       Impact factor: 3.490

9.  Substrate Specificities and Efflux Efficiencies of RND Efflux Pumps of Acinetobacter baumannii.

Authors:  Inga V Leus; Jon W Weeks; Vincent Bonifay; Lauren Smith; Sophie Richardson; Helen I Zgurskaya
Journal:  J Bacteriol       Date:  2018-06-11       Impact factor: 3.490

10.  On the role of TolC in multidrug efflux: the function and assembly of AcrAB-TolC tolerate significant depletion of intracellular TolC protein.

Authors:  Ganesh Krishnamoorthy; Elena B Tikhonova; Girija Dhamdhere; Helen I Zgurskaya
Journal:  Mol Microbiol       Date:  2013-01-21       Impact factor: 3.501

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