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Literature DB >> 21221092

Essential information for synthetic DNA sequences.

Jean Peccoud, J Christopher Anderson, Deepak Chandran, Douglas Densmore, Michal Galdzicki, Matthew W Lux, Cesar A Rodriguez, Guy-Bart Stan, Herbert M Sauro.

Abstract

Entities: Species

Mesh：

Year: 2011 PMID： 21221092 DOI： 10.1038/nbt.1753

Source DB: PubMed Journal: Nat Biotechnol ISSN： 1087-0156 Impact factor: 54.908

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7 in total

1. Construction of a genetic toggle switch in Escherichia coli.

Authors: T S Gardner; C R Cantor; J J Collins
Journal: Nature Date: 2000-01-20 Impact factor: 49.962

2. A synthetic multicellular system for programmed pattern formation.

Authors: Subhayu Basu; Yoram Gerchman; Cynthia H Collins; Frances H Arnold; Ron Weiss
Journal: Nature Date: 2005-04-28 Impact factor: 49.962

3. Intron length increases oscillatory periods of gene expression in animal cells.

Authors: Ian A Swinburne; David G Miguez; Dirk Landgraf; Pamela A Silver
Journal: Genes Dev Date: 2008-08-14 Impact factor: 11.361

4. Self-sufficient control of urate homeostasis in mice by a synthetic circuit.

Authors: Christian Kemmer; Marc Gitzinger; Marie Daoud-El Baba; Valentin Djonov; Jörg Stelling; Martin Fussenegger
Journal: Nat Biotechnol Date: 2010-03-28 Impact factor: 54.908

5. Creation of a bacterial cell controlled by a chemically synthesized genome.

Authors: Daniel G Gibson; John I Glass; Carole Lartigue; Vladimir N Noskov; Ray-Yuan Chuang; Mikkel A Algire; Gwynedd A Benders; Michael G Montague; Li Ma; Monzia M Moodie; Chuck Merryman; Sanjay Vashee; Radha Krishnakumar; Nacyra Assad-Garcia; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Lei Young; Zhi-Qing Qi; Thomas H Segall-Shapiro; Christopher H Calvey; Prashanth P Parmar; Clyde A Hutchison; Hamilton O Smith; J Craig Venter
Journal: Science Date: 2010-05-20 Impact factor: 47.728

6. Automated design of synthetic ribosome binding sites to control protein expression.

Authors: Howard M Salis; Ethan A Mirsky; Christopher A Voigt
Journal: Nat Biotechnol Date: 2009-10-04 Impact factor: 54.908

7. Engineering BioBrick vectors from BioBrick parts.

Authors: Reshma P Shetty; Drew Endy; Thomas F Knight
Journal: J Biol Eng Date: 2008-04-14 Impact factor: 4.355

7 in total

11 in total

Review 1. Genetic design automation: engineering fantasy or scientific renewal?

Authors: Matthew W Lux; Brian W Bramlett; David A Ball; Jean Peccoud
Journal: Trends Biotechnol Date: 2011-10-14 Impact factor: 19.536

2. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.

Authors: Michal Galdzicki; Kevin P Clancy; Ernst Oberortner; Matthew Pocock; Jacqueline Y Quinn; Cesar A Rodriguez; Nicholas Roehner; Mandy L Wilson; Laura Adam; J Christopher Anderson; Bryan A Bartley; Jacob Beal; Deepak Chandran; Joanna Chen; Douglas Densmore; Drew Endy; Raik Grünberg; Jennifer Hallinan; Nathan J Hillson; Jeffrey D Johnson; Allan Kuchinsky; Matthew Lux; Goksel Misirli; Jean Peccoud; Hector A Plahar; Evren Sirin; Guy-Bart Stan; Alan Villalobos; Anil Wipat; John H Gennari; Chris J Myers; Herbert M Sauro
Journal: Nat Biotechnol Date: 2014-06-06 Impact factor: 54.908

Essential information for synthetic DNA sequences.

1. Construction of a genetic toggle switch in Escherichia coli.

2. A synthetic multicellular system for programmed pattern formation.

3. Intron length increases oscillatory periods of gene expression in animal cells.

4. Self-sufficient control of urate homeostasis in mice by a synthetic circuit.

5. Creation of a bacterial cell controlled by a chemically synthesized genome.

6. Automated design of synthetic ribosome binding sites to control protein expression.

7. Engineering BioBrick vectors from BioBrick parts.

Review 1. Genetic design automation: engineering fantasy or scientific renewal?

2. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.

3. Interactive assembly algorithms for molecular cloning.

Review 4. Engineering bacteria for diagnostic and therapeutic applications.

5. Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools.

6. GenoLIB: a database of biological parts derived from a library of common plasmid features.

7. One-pot DNA construction for synthetic biology: the Modular Overlap-Directed Assembly with Linkers (MODAL) strategy.

8. Sequence verification of synthetic DNA by assembly of sequencing reads.

9. Modular, rule-based modeling for the design of eukaryotic synthetic gene circuits.

10. Functional Genetic Elements for Controlling Gene Expression in Cupriavidus necator H16.