| Literature DB >> 21219594 |
Andrzej Lewiński1, Ewa Brzeziańska, Karolina Czarnecka, Joanna Latek, Włodzimierz Koptas, Anna Cyniak-Magierska.
Abstract
BACKGROUND: Peptidyl-prolyl cis/trans isomerase (Pin1), encoded by PIN1 gene with locus in chromosome 19p13, is an enzyme that catalytically induces conformational changes in proteins after phosphorylation on serine or threonine residues preceding proline (pSer/Thr-Pro motifs); in this way, it has an influence on protein interactions and intracellular localizations of proteins. The aim of the study were: 1) an assessment of PIN1 gene expression level in benign and malignant thyroid lesions; 2) the evaluation of possible correlations between gene expression and histopathological variants of papillary thyroid carcinoma (PTC) or tumour size, classified according to TNM classification of primary tumours (in case of PTC only); 3) the estimation of possible relationships between expression of the gene in question and patients' sex or age.Entities:
Year: 2011 PMID: 21219594 PMCID: PMC3024986 DOI: 10.1186/1756-6614-4-4
Source DB: PubMed Journal: Thyroid Res ISSN: 1756-6614
Sex, age, histopathological diagnosis of malignant thyroid tumours in the studied patients
| Case number | Sex | Age | Histopathological diagnosis | TNM staging system | American Joint Committee on Cancer (AJCC) grouping system |
|---|---|---|---|---|---|
| 1 | F | 23 | PTC, classic variant | pT1bNxM0 | I |
| 2 | F | 38 | PTC, classic variant | pT1N0M0 | I |
| 3 | F | 52 | PTC, classic variant | pT2N0M0 | II |
| 4 | F | 71 | PTC, classic variant | pT2N0Mx | II |
| 5 | F | 47 | PTC, classic variant | pT1aN0M0 | I |
| 6 | F | 24 | PTC, classic variant | pT1N0Mx | I |
| 7 | F | 33 | PTC, classic variant | pT2aNxMx | II |
| 8 | F | 28 | PTC, classic variant | pT1bNxMx | I |
| 9 | F | 40 | PTC, classic variant | pT4N0Mx | IVA |
| 10 | F | 17 | PTC, classic variant | pT2bN1aM0 | III |
| 11 | M | 47 | PTC, classic variant | pT2aN1aM0 | III |
| 12 | M | 31 | PTC, classic variant | pT2aN0M0 | II |
| 13 | F | 16 | PTC, classic variant | pT2aN0M0 | II |
| 14 | F | 61 | PTC, classic variant | pT2aN0M0 | II |
| 15 | F | 48 | PTC, classic variant | pT4N1aM0 | IVA |
| 16 | M | 30 | PTC, classic variant | pT4N1bM0 | IV |
| 17 | F | 31 | PTC, classic variant | pT1NxMx | I |
| 18 | F | 40 | PTC, classic variant | pT1aNxMx | I |
| 19 | F | 28 | PTC, classic variant | pT1aNxMx | I |
| 20 | F | 25 | PTC, classic variant | pT1aN1aMx | I |
| 21 | F | 49 | PTC, tall-cell variant | pT2bN0M0 | II |
| 22 | F | 52 | PTC, tall-cell variant | pT4N0M0 | IVA |
| 23 | F | 59 | PTC, tall-cell variant | pT4bN1Mx | IV |
| 24 | F | 36 | PTC, follicular variant | pT2aNxMx | II |
| 25 | M | 28 | PTC, follicular variant | pT2N1aMx | II |
| 26 | M | 52 | PTC, follicular variant | pT3NxMx | III |
| 27 | F | 62 | PTC, follicular variant | pT1aNxMx | I |
| 28 | F | 26 | PTC, follicular variant | pT4N1aM0 | IVA |
| 29 | F | 56 | PTC, follicular variant | pT3aN0M0 | III |
| 30 | F | 68 | PTC, follicular variant | pT2bN1aM0 | II |
| 31 | M | 66 | PTC, follicular variant | pT4aN0M0 | IVA |
| 32 | F | 55 | PTC, follicular variant | pT2aN0M0 | II |
| 33 | M | 74 | MTC | pT4N0M0 | IVA |
| 34 | F | 32 | MTC | pT1NxMx | I |
| 35 | F | 32 | MTC | pT1NxMx | I |
| 36 | F | 59 | MTC | pT3N1bM0 | III |
| 37 | F | 56 | MTC | pT3N0M0 | III |
| 38 | F | 71 | MTC | pT4N1aM0 | IVA |
| 39 | F | 68 | MTC | pT3aN0M0 | III |
Sex, age, histopathological diagnosis of benign thyroid lesions in the studied patients.
| Case number | Sex | Age | Histopathological diagnosis |
|---|---|---|---|
| 1 | F | 49 | FA |
| 2 | F | 52 | FA |
| 3 | M | 75 | FA |
| 4 | F | 29 | FA |
| 5 | F | 41 | FA |
| 6 | F | 41 | FA |
| 7 | F | 59 | FA |
| 8 | F | 40 | NG |
| 9 | F | 42 | NG |
| 10 | F | 30 | NG |
| 11 | F | 48 | NG |
| 12 | F | 42 | NG |
| 13 | F | 64 | NG |
| 14 | F | 69 | NG |
| 15 | F | 72 | NG |
| 16 | F | 50 | NG |
| 17 | F | 51 | NG |
| 18 | F | 63 | NG |
| 19 | F | 49 | NG |
| 20 | F | 49 | NG |
| 21 | F | 38 | NG |
| 22 | M | 52 | NG |
| 23 | F | 31 | NG |
| 24 | F | 29 | NG |
| 25 | M | 75 | NG |
| 26 | F | 28 | NG |
| 27 | F | 30 | NG |
| 28 | F | 72 | NG |
| 29 | F | 50 | NG |
| 30 | F | 40 | NG |
| 31 | F | 59 | NG |
Real-time PCR conditions for PIN1 gene amplification.
| Times and temperatures | |||
|---|---|---|---|
| HOLD | HOLD | CYCLE | |
| UNG activation 2 min, 50°C | 10 min, 95°C | 15 s, 95°C | 1 min, 60°C |
The expression level (RQ) of PIN1 gene, calculated by the ΔΔCT method in the studied groups.
| Group | No. of cases | Mean RQ | Range of RQ values |
|---|---|---|---|
| PTC | 32 | 6.72 | 0.363-52.279 |
| MTC | 7 | 5.55 | 0.917-19.408 |
| FA | 7 | 2.79 | 0.511-8.207 |
| NG | 24 | 2.15 | 0.322-13.153 |
Figure 1Box-and-whisker plots, representing the expression of . Results are calculated as RQ values. Whiskers represent means ± SD (standard deviation) for particular groups. Boxes represent means ± SEM (standard error of mean). The data were statistically analyzed, using Newman-Keuls' multiple comparison test, followed by Kruskal-Wallis' test, in order to compare the level of expression values (RQ) among the four studied independent groups, p < 0.05; * - p < 0.031977 (Neuman-Keuls' test).
Statistical analysis of results - comparison of RQ value among the four studied groups (PTC, MTC, FA, NG). Newman-Keuls' test, p - level of significance.
| PTC | MTC | FA | NG | |
|---|---|---|---|---|
| 1.000000 | 1.000000 | |||
| 1.000000 | 1.000000 | 0.154248 | ||
| 1.000000 | 1.000000 | 1.000000 | ||
| 0.154248 | 1.000000 | |||
Figure 2Box-and-whisker plots, representing the difference in the expression of . Results are calculated as RQ values; no significant differences among studied groups are shown. Whiskers represent means ± SD (standard deviation) for particular groups. Boxes represent means ± SEM (standard error of mean). The results were statistically analyzed using Kruskal-Wallis' test, p = 0.9501.
Figure 3Box-and-whisker plots, representing the difference in the expression of . Results are calculated as RQ values; no significant differences between studied groups are demonstrated. Whiskers represent means ± SD (standard deviation) for particular groups. Boxes represent means ± SEM (standard error of mean). The results were statistically analyzed using Mann-Whitney's U test, p = 0.6873.