Literature DB >> 21213076

Sequence-specific 1H, 13C and 15N assignments of the phosphoesterase (PE) domain of Pseudomonas aeruginosa DNA ligase D (LigD).

Kaushik Dutta1, Aswin Natarajan, Pravin A Nair, Stewart Shuman, Ranajeet Ghose.   

Abstract

DNA ligase D (LigD), consisting of polymerase, ligase and phosphoesterase domains, is the essential catalyst of the bacterial non-homologous end-joining pathway of DNA double-strand break repair. The phosphoesterase (PE) module performs manganese-dependent 3'-phosphomonoesterase and 3'-ribonucleoside resection reactions that heal broken ends in preparation for sealing. LigD PE exemplifies a structurally and mechanistically unique class of DNA end-processing enzymes. Here, we present the resonance assignments of the PE domain of Pseudomonas aeruginosa LigD comprising the N-terminal 177 residues.

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Year:  2011        PMID: 21213076      PMCID: PMC4156853          DOI: 10.1007/s12104-010-9289-7

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  11 in total

1.  Using NMRView to visualize and analyze the NMR spectra of macromolecules.

Authors:  Bruce A Johnson
Journal:  Methods Mol Biol       Date:  2004

Review 2.  Bacterial DNA repair by non-homologous end joining.

Authors:  Stewart Shuman; Michael S Glickman
Journal:  Nat Rev Microbiol       Date:  2007-11       Impact factor: 60.633

3.  Essential constituents of the 3'-phosphoesterase domain of bacterial DNA ligase D, a nonhomologous end-joining enzyme.

Authors:  Hui Zhu; Li Kai Wang; Stewart Shuman
Journal:  J Biol Chem       Date:  2005-07-25       Impact factor: 5.157

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  Structure of bacterial LigD 3'-phosphoesterase unveils a DNA repair superfamily.

Authors:  Pravin A Nair; Paul Smith; Stewart Shuman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-29       Impact factor: 11.205

6.  Characterizing the use of perdeuteration in NMR studies of large proteins: 13C, 15N and 1H assignments of human carbonic anhydrase II.

Authors:  R A Venters; B T Farmer; C A Fierke; L D Spicer
Journal:  J Mol Biol       Date:  1996-12-20       Impact factor: 5.469

7.  Novel 3'-ribonuclease and 3'-phosphatase activities of the bacterial non-homologous end-joining protein, DNA ligase D.

Authors:  Hui Zhu; Stewart Shuman
Journal:  J Biol Chem       Date:  2005-05-15       Impact factor: 5.157

8.  Sensitivity of secondary structure propensities to sequence differences between alpha- and gamma-synuclein: implications for fibrillation.

Authors:  Joseph A Marsh; Vinay K Singh; Zongchao Jia; Julie D Forman-Kay
Journal:  Protein Sci       Date:  2006-11-06       Impact factor: 6.725

9.  A software tool for the prediction of Xaa-Pro peptide bond conformations in proteins based on 13C chemical shift statistics.

Authors:  Mario Schubert; Dirk Labudde; Hartmut Oschkinat; Peter Schmieder
Journal:  J Biomol NMR       Date:  2002-10       Impact factor: 2.835

10.  Prediction of Xaa-Pro peptide bond conformation from sequence and chemical shifts.

Authors:  Yang Shen; Ad Bax
Journal:  J Biomol NMR       Date:  2009-12-30       Impact factor: 2.835

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  2 in total

1.  Structural insights to the metal specificity of an archaeal member of the LigD 3'-phosphoesterase DNA repair enzyme family.

Authors:  Ushati Das; Paul Smith; Stewart Shuman
Journal:  Nucleic Acids Res       Date:  2011-09-28       Impact factor: 16.971

2.  Solution structure and DNA-binding properties of the phosphoesterase domain of DNA ligase D.

Authors:  Aswin Natarajan; Kaushik Dutta; Deniz B Temel; Pravin A Nair; Stewart Shuman; Ranajeet Ghose
Journal:  Nucleic Acids Res       Date:  2011-11-13       Impact factor: 16.971

  2 in total

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