Literature DB >> 21209096

Quaternary structure of the oxaloacetate decarboxylase membrane complex and mechanistic relationships to pyruvate carboxylases.

Monica Balsera1, Ruben M Buey, Xiao-Dan Li.   

Abstract

The oxaloacetate decarboxylase primary Na(+) pump (OAD) is an essential membrane protein complex that functions in the citrate fermentation pathway of some pathogenic bacteria under anaerobic conditions. OAD contains three different subunits: Oad-α, a biotinylated extrinsic protein that catalyzes the α-ketodecarboxylation of oxaloacetate; Oad-γ, a structural bitopic membrane protein whose cytosolic tail (named as Oad-γ') binds tightly to Oad-α; and Oad-β, a multispan transmembrane α-helical protein that constitutes the Na(+) channel. How OAD is organized structurally at the membrane and what the molecular determinants are that lead to an efficient energy coupling mechanism remain elusive. In the present work, we elucidate the stoichiometry of the native complex as well as the low resolution structure of the peripheral components of OAD (Oad-α and Oad-γ') by small angle x-ray scattering. Our results point to a quaternary assembly similar to the pyruvate carboxylase complex organization. Herein, we propose a model in which the association in pairs of Oad-α dimers, mediated by Oad-γ, results in the acquisition of a functional oligomeric state at the bacterial membrane. New structural insights for the conformational rearrangements associated with the carboxylbiotin transfer reaction within OAD are provided.

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Year:  2011        PMID: 21209096      PMCID: PMC3058996          DOI: 10.1074/jbc.M110.197442

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  29 in total

1.  Membrane topology of the beta-subunit of the oxaloacetate decarboxylase Na+ pump from Klebsiella pneumoniae.

Authors:  P Jockel; M Di Berardino; P Dimroth
Journal:  Biochemistry       Date:  1999-10-12       Impact factor: 3.162

2.  A molecular coupling mechanism for the oxaloacetate decarboxylase Na+ pump as inferred from mutational analysis.

Authors:  P Jockel; M Schmid; J Steuber; P Dimroth
Journal:  Biochemistry       Date:  2000-03-07       Impact factor: 3.162

3.  Essential role of tyrosine 229 of the oxaloacetate decarboxylase beta-subunit in the energy coupling mechanism of the Na(+) pump.

Authors:  P Jockel; M Schmid; T Choinowski; P Dimroth
Journal:  Biochemistry       Date:  2000-04-18       Impact factor: 3.162

Review 4.  Coupling mechanism of the oxaloacetate decarboxylase Na(+) pump.

Authors:  P Dimroth; P Jockel; M Schmid
Journal:  Biochim Biophys Acta       Date:  2001-05-01

5.  Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing.

Authors:  D I Svergun
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

6.  Role of conserved residues within helices IV and VIII of the oxaloacetate decarboxylase beta subunit in the energy coupling mechanism of the Na+ pump.

Authors:  Markus Schmid; Thomas Vorburger; Klaas Martinus Pos; Peter Dimroth
Journal:  Eur J Biochem       Date:  2002-06

Review 7.  The biotin enzyme family: conserved structural motifs and domain rearrangements.

Authors:  Sarawut Jitrapakdee; John C Wallace
Journal:  Curr Protein Pept Sci       Date:  2003-06       Impact factor: 3.272

8.  Subunit gamma of the oxaloacetate decarboxylase Na(+) pump: interaction with other subunits/domains of the complex and binding site for the Zn(2+) metal ion.

Authors:  Markus Schmid; Markus R Wild; Pius Dahinden; Peter Dimroth
Journal:  Biochemistry       Date:  2002-01-29       Impact factor: 3.162

9.  Oxaloacetate decarboxylase of Vibrio cholerae: purification, characterization, and expression of the genes in Escherichia coli.

Authors:  Pius Dahinden; Yolanda Auchli; Thierry Granjon; Malgorzata Taralczak; Markus Wild; Peter Dimroth
Journal:  Arch Microbiol       Date:  2005-01-13       Impact factor: 2.552

10.  Site-directed sulfhydryl labeling of the oxaloacetate decarboxylase Na+ pump of Klebsiella pneumoniae: helix VIII comprises a portion of the sodium ion channel.

Authors:  Markus R Wild; Klaas M Pos; Peter Dimroth
Journal:  Biochemistry       Date:  2003-10-14       Impact factor: 3.162

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  9 in total

1.  Interaction between the biotin carboxyl carrier domain and the biotin carboxylase domain in pyruvate carboxylase from Rhizobium etli.

Authors:  Adam D Lietzan; Ann L Menefee; Tonya N Zeczycki; Sudhanshu Kumar; Paul V Attwood; John C Wallace; W Wallace Cleland; Martin St Maurice
Journal:  Biochemistry       Date:  2011-10-18       Impact factor: 3.162

2.  Biochemical and genetic characterization of the Enterococcus faecalis oxaloacetate decarboxylase complex.

Authors:  Guillermo D Repizo; Víctor S Blancato; Pablo Mortera; Juke S Lolkema; Christian Magni
Journal:  Appl Environ Microbiol       Date:  2013-02-22       Impact factor: 4.792

3.  Role of Indole Production on Virulence of Vibrio cholerae Using Galleria mellonella Larvae Model.

Authors:  Taiyeebah Nuidate; Natta Tansila; Suwat Saengkerdsub; Jetnaphang Kongreung; Dhamodharan Bakkiyaraj; Varaporn Vuddhakul
Journal:  Indian J Microbiol       Date:  2016-05-06       Impact factor: 2.461

4.  The PEP-pyruvate-oxaloacetate node: variation at the heart of metabolism.

Authors:  Jeroen G Koendjbiharie; Richard van Kranenburg; Servé W M Kengen
Journal:  FEMS Microbiol Rev       Date:  2021-05-05       Impact factor: 16.408

5.  Comparative Analyses of the Transport Proteins Encoded within the Genomes of nine Bifidobacterium Species.

Authors:  Hassan Zafar; Milton H Saier
Journal:  Microb Physiol       Date:  2021-09-23

Review 6.  Structure and function of biotin-dependent carboxylases.

Authors:  Liang Tong
Journal:  Cell Mol Life Sci       Date:  2012-08-07       Impact factor: 9.261

7.  Early evolution of the biotin-dependent carboxylase family.

Authors:  Jonathan Lombard; David Moreira
Journal:  BMC Evol Biol       Date:  2011-08-09       Impact factor: 3.260

8.  Structural insights into sodium transport by the oxaloacetate decarboxylase sodium pump.

Authors:  Xin Xu; Huigang Shi; Xiaowen Gong; Pu Chen; Ying Gao; Xinzheng Zhang; Song Xiang
Journal:  Elife       Date:  2020-05-27       Impact factor: 8.140

9.  Comparative Genomics of the Transport Proteins of Ten Lactobacillus Strains.

Authors:  Hassan Zafar; Milton H Saier
Journal:  Genes (Basel)       Date:  2020-10-21       Impact factor: 4.096

  9 in total

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