Literature DB >> 21207564

Rapid and quantitative disulfide bond formation for a polypeptide chain using a cyclic selenoxide reagent in an aqueous medium.

Kenta Arai1, Kenichi Dedachi, Michio Iwaoka.   

Abstract

To elucidate the reaction mechanism of the disulfide (SS) bond formation reaction of a polypeptide molecule with a water-soluble selenoxide reagent, trans-3,4-dihydroxyselenolane oxide (DHS(ox)), short-term oxidation experiments were carried out for the reduced state (R) of a recombinant hirudin CX-397 variant at pH 7.0 and 25 °C. In the reaction, R was oxidized sequentially to one-SS, two-SS, and three-SS intermediate ensembles within 1 min. The kinetic analysis revealed that the three second-order rate constants for the SS formation are proportional to the number of thiol groups existing in the reactant SS intermediates, indicating the stochastic nature of the SS formation. Ab initio calculation at the HF/6-31++G(d,p) level in water by using the polarizable continuum model suggested that the SS formation reaction is highly exothermic and proceeds via a reactive thioselenurane intermediate with a distorted linear O-Se-S linkage. The results clearly demonstrated that the rate-determining step of the SS formation reaction is the first bimolecular process between a thiol substrate and DHS(ox) rather than the subsequent process to release a SS product.
Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2010        PMID: 21207564     DOI: 10.1002/chem.201002742

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  10 in total

1.  Alkyl chain modulated cytotoxicity and antioxidant activity of bioinspired amphiphilic selenolanes.

Authors:  Prachi Verma; Amit Kunwar; Kenta Arai; Michio Iwaoka; K Indira Priyadarsini
Journal:  Toxicol Res (Camb)       Date:  2015-11-25       Impact factor: 3.524

2.  Kinetic and thermodynamic analysis of the conformational folding process of SS-reduced bovine pancreatic ribonuclease A using a selenoxide reagent with high oxidizing ability.

Authors:  Kenta Arai; Fumio Kumakura; Michio Iwaoka
Journal:  FEBS Open Bio       Date:  2012-04-16       Impact factor: 2.693

3.  Effects of Metal Ions, Temperature, and a Denaturant on the Oxidative Folding Pathways of Bovine α-Lactalbumin.

Authors:  Reina Shinozaki; Michio Iwaoka
Journal:  Int J Mol Sci       Date:  2017-09-16       Impact factor: 5.923

4.  Glutathione Peroxidase-Like Activity of Amino-Substituted Water-Soluble Cyclic Selenides: A Shift of the Major Catalytic Cycle in Methanol.

Authors:  Kenta Arai; Ayako Tashiro; Yuui Osaka; Michio Iwaoka
Journal:  Molecules       Date:  2017-02-25       Impact factor: 4.411

5.  Synthesis of Reusable Silica Nanosphere-Supported Pt(IV) Complex for Formation of Disulfide Bonds in Peptides.

Authors:  Xiaonan Hou; Xiaowei Zhao; Yamei Zhang; Aiying Han; Shuying Huo; Shigang Shen
Journal:  Molecules       Date:  2017-02-22       Impact factor: 4.411

6.  Behavior of the E-E' Bonds (E, E' = S and Se) in Glutathione Disulfide and Derivatives Elucidated by Quantum Chemical Calculations with the Quantum Theory of Atoms-in-Molecules Approach.

Authors:  Satoko Hayashi; Yutaka Tsubomoto; Waro Nakanishi
Journal:  Molecules       Date:  2018-02-17       Impact factor: 4.411

7.  Oxidative folding pathways of bovine milk β-lactoglobulin with odd cysteine residues.

Authors:  Michio Iwaoka; Takumi Mitsuji; Reina Shinozaki
Journal:  FEBS Open Bio       Date:  2019-06-20       Impact factor: 2.693

Review 8.  Flexible Folding: Disulfide-Containing Peptides and Proteins Choose the Pathway Depending on the Environments.

Authors:  Kenta Arai; Michio Iwaoka
Journal:  Molecules       Date:  2021-01-02       Impact factor: 4.411

9.  Synthesis of 4-Selenothreofuranose Derivatives via Pummerer-Type Reactions of trans-3,4-Dioxygenated Tetrahydroselenophenes Mediated by a Selenonium Intermediate.

Authors:  Michio Iwaoka; Yuta Hiyoshi; Shota Arai; Takeru Ito
Journal:  ACS Omega       Date:  2021-06-25

10.  A water-soluble selenoxide reagent as a useful probe for the reactivity and folding of polythiol peptides.

Authors:  Kenta Arai; Masato Noguchi; Beena G Singh; K Indira Priyadarsini; Katsuhiko Fujio; Yurika Kubo; Kyoko Takayama; Setsuko Ando; Michio Iwaoka
Journal:  FEBS Open Bio       Date:  2012-12-29       Impact factor: 2.693

  10 in total

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