Literature DB >> 21206035

Crystallization and preliminary X-ray crystallographic analysis of the short-chain dehydrogenase/reductase-type DDB_G0291732 protein from Dictyostelium discoideum.

Min Kyu Kim1, Hyung Soon Yim, Sa Ouk Kang.   

Abstract

The DDB_G0291732 gene product from Dictyostelium discoideum, which is a NmrA-like protein that belongs to the short-chain dehydrogenase/reductase superfamily but shows deviations in conserved sequence regions, has been crystallized by the hanging-drop vapour-diffusion method at 295 K. A 1.65 Å resolution data set was collected using synchrotron radiation. The crystals of DDB_G0291732 protein belonged to space group P2(1), with unit-cell parameters a=38.5, b=63.7, c=56.0 Å, β=91.7°. Assuming the presence of one molecule in the asymmetric unit, the solvent content was estimated to be about 38.1%.

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Year:  2010        PMID: 21206035      PMCID: PMC3079983          DOI: 10.1107/S1744309110046932

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  14 in total

1.  The structure of the negative transcriptional regulator NmrA reveals a structural superfamily which includes the short-chain dehydrogenase/reductases.

Authors:  D K Stammers; J Ren; K Leslie; C E Nichols; H K Lamb; S Cocklin; A Dodds; A R Hawkins
Journal:  EMBO J       Date:  2001-12-03       Impact factor: 11.598

2.  Molecular replacement with MOLREP.

Authors:  Alexei Vagin; Alexei Teplyakov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

3.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

4.  Critical residues for structure and catalysis in short-chain dehydrogenases/reductases.

Authors:  Charlotta Filling; Kurt D Berndt; Jordi Benach; Stefan Knapp; Tim Prozorovski; Erik Nordling; Rudolf Ladenstein; Hans Jörnvall; Udo Oppermann
Journal:  J Biol Chem       Date:  2002-04-25       Impact factor: 5.157

Review 5.  Short-chain dehydrogenases/reductases (SDR): the 2002 update.

Authors:  Udo Oppermann; Charlotta Filling; Malin Hult; Naeem Shafqat; Xiaoqiu Wu; Monica Lindh; Jawed Shafqat; Erik Nordling; Yvonne Kallberg; Bengt Persson; Hans Jörnvall
Journal:  Chem Biol Interact       Date:  2003-02-01       Impact factor: 5.192

6.  Structure and mechanism of a bacterial haloalcohol dehalogenase: a new variation of the short-chain dehydrogenase/reductase fold without an NAD(P)H binding site.

Authors:  R M de Jong; J J W Tiesinga; H J Rozeboom; K H Kalk; L Tang; D B Janssen; B W Dijkstra
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

7.  Restructuring of the dinucleotide-binding fold in an NADP(H) sensor protein.

Authors:  Xiaofeng Zheng; Xueyu Dai; Yanmei Zhao; Qiang Chen; Fei Lu; Deqiang Yao; Quan Yu; Xinping Liu; Chuanmao Zhang; Xiaocheng Gu; Ming Luo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-11       Impact factor: 11.205

Review 8.  Short-chain dehydrogenases/reductases (SDR).

Authors:  H Jörnvall; B Persson; M Krook; S Atrian; R Gonzàlez-Duarte; J Jeffery; D Ghosh
Journal:  Biochemistry       Date:  1995-05-09       Impact factor: 3.162

9.  Dimerization and enzymatic activity of fungal 17beta-hydroxysteroid dehydrogenase from the short-chain dehydrogenase/reductase superfamily.

Authors:  Katja Kristan; Dominga Deluca; Jerzy Adamski; Jure Stojan; Tea Lanisnik Rizner
Journal:  BMC Biochem       Date:  2005-12-16       Impact factor: 4.059

10.  Solving structures of protein complexes by molecular replacement with Phaser.

Authors:  Airlie J McCoy
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-12-13
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