Literature DB >> 21203985

A dimeric structure of PD-L1: functional units or evolutionary relics?

Yong Chen1, Peipei Liu, Feng Gao, Hao Cheng, Jianxun Qi, George F Gao.   

Abstract

PD-L1 is a member of the B7 protein family, most of whose members so far were identified as dimers in a solution and crystalline state, either complexed or uncomplexed with their ligand(s). The binding of PD-L1 with its receptor PD-1 (CD279) delivers an inhibitory signal regulating the T cell function. Simultaneously with the Garboczi group, we successfully solved another structure of human PD-L1 (hPD-L1). Our protein crystallized in the space group of C222(1) with two hPD-L1 molecules per asymmetric unit. After comparison of reported B7 structures, we have found some intrinsic factors involved in the interaction of these two molecules. Based on these results, we tend to believe this uncomplexed hPD-L1 structure demonstrated its potential dimeric state in solution, although it could just be an evolutionary relic, too weak to be detected under present technology, or still a functional unit deserved our attentions.

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Year:  2010        PMID: 21203985      PMCID: PMC4875164          DOI: 10.1007/s13238-010-0022-1

Source DB:  PubMed          Journal:  Protein Cell        ISSN: 1674-800X            Impact factor:   14.870


  34 in total

1.  Expression, refolding, purification, molecular characterization, crystallization, and preliminary X-ray analysis of the receptor binding domain of human B7-2.

Authors:  Xuewu Zhang; Jean-Claude D Schwartz; Steven C Almo; Stanley G Nathenson
Journal:  Protein Expr Purif       Date:  2002-06       Impact factor: 1.650

2.  Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Authors:  Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson
Journal:  Proteins       Date:  2003-02-15

3.  A new analysis of allogeneic interactions.

Authors:  K J Lafferty; A J Cunningham
Journal:  Aust J Exp Biol Med Sci       Date:  1975-02

4.  Crystal structure of the HLA-Cw3 allotype-specific killer cell inhibitory receptor KIR2DL2.

Authors:  G A Snyder; A G Brooks; P D Sun
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

5.  Structure and dimerization of a soluble form of B7-1.

Authors:  S Ikemizu; R J Gilbert; J A Fennelly; A V Collins; K Harlos; E Y Jones; D I Stuart; S J Davis
Journal:  Immunity       Date:  2000-01       Impact factor: 31.745

6.  The PD-1/PD-L1 complex resembles the antigen-binding Fv domains of antibodies and T cell receptors.

Authors:  David Yin-Wei Lin; Yoshimasa Tanaka; Masashi Iwasaki; Apostolos G Gittis; Hua-Poo Su; Bunzo Mikami; Taku Okazaki; Tasuku Honjo; Nagahiro Minato; David N Garboczi
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-14       Impact factor: 11.205

7.  Restoration of HCV-specific T cell functions by PD-1/PD-L1 blockade in HCV infection: effect of viremia levels and antiviral treatment.

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Journal:  J Hepatol       Date:  2008-01-28       Impact factor: 25.083

8.  Insulin-induced remission in new-onset NOD mice is maintained by the PD-1-PD-L1 pathway.

Authors:  Brian T Fife; Indira Guleria; Melanie Gubbels Bupp; Todd N Eagar; Qizhi Tang; Helene Bour-Jordan; Hideo Yagita; Miyuki Azuma; Mohamed H Sayegh; Jeffrey A Bluestone
Journal:  J Exp Med       Date:  2006-11-20       Impact factor: 14.307

9.  Design and characterization of viral polypeptide inhibitors targeting Newcastle disease virus fusion.

Authors:  Jieqing Zhu; Xiuli Jiang; Yueyong Liu; Po Tien; George F Gao
Journal:  J Mol Biol       Date:  2005-10-10       Impact factor: 5.469

10.  Induced expression of PD-1, a novel member of the immunoglobulin gene superfamily, upon programmed cell death.

Authors:  Y Ishida; Y Agata; K Shibahara; T Honjo
Journal:  EMBO J       Date:  1992-11       Impact factor: 11.598

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  27 in total

1.  Binding of herpes simplex virus glycoprotein D to nectin-1 exploits host cell adhesion.

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Journal:  Nat Commun       Date:  2011-12-06       Impact factor: 14.919

2.  Crystal structures of the two membrane-proximal Ig-like domains (D3D4) of LILRB1/B2: alternative models for their involvement in peptide-HLA binding.

Authors:  Gol Nam; Yi Shi; Myongchol Ryu; Qihui Wang; Hao Song; Jun Liu; Jinghua Yan; Jianxun Qi; George F Gao
Journal:  Protein Cell       Date:  2013-08-17       Impact factor: 14.870

3.  Structural basis of anti-PD-L1 monoclonal antibody avelumab for tumor therapy.

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Journal:  Cell Res       Date:  2016-08-30       Impact factor: 25.617

4.  Crystal structure of leukocyte Ig-like receptor LILRB4 (ILT3/LIR-5/CD85k): a myeloid inhibitory receptor involved in immune tolerance.

Authors:  Hao Cheng; Fiyaz Mohammed; Gol Nam; Yong Chen; Jianxun Qi; Lee I Garner; Rachel L Allen; Jinghua Yan; Benjamin E Willcox; George F Gao
Journal:  J Biol Chem       Date:  2011-03-30       Impact factor: 5.157

5.  Leveraging structural and 2D-QSAR to investigate the role of functional group substitutions, conserved surface residues and desolvation in triggering the small molecule-induced dimerization of hPD-L1.

Authors:  Marawan Ahmed; Aravindhan Ganesan; Khaled Barakat
Journal:  BMC Chem       Date:  2022-06-27

6.  Crystal structure of the interferon gamma receptor alpha chain from chicken reveals an undetected extra helix compared with the human counterparts.

Authors:  Zhiguang Ping; Jianxun Qi; Yanling Sun; Guangwen Lu; Yi Shi; Xiaojia Wang; George F Gao; Ming Wang
Journal:  J Interferon Cytokine Res       Date:  2013-11-27       Impact factor: 2.607

7.  The molecular basis for modulation of human Vγ9Vδ2 T cell responses by CD277/butyrophilin-3 (BTN3A)-specific antibodies.

Authors:  Aparna Palakodeti; Andrew Sandstrom; Lakshmi Sundaresan; Christelle Harly; Steven Nedellec; Daniel Olive; Emmanuel Scotet; Marc Bonneville; Erin J Adams
Journal:  J Biol Chem       Date:  2012-07-30       Impact factor: 5.157

8.  Structure of the Complex of Human Programmed Death 1, PD-1, and Its Ligand PD-L1.

Authors:  Krzysztof M Zak; Radoslaw Kitel; Sara Przetocka; Przemyslaw Golik; Katarzyna Guzik; Bogdan Musielak; Alexander Dömling; Grzegorz Dubin; Tad A Holak
Journal:  Structure       Date:  2015-10-22       Impact factor: 5.006

9.  Binding mode of the side-by-side two-IgV molecule CD226/DNAM-1 to its ligand CD155/Necl-5.

Authors:  Han Wang; Jianxun Qi; Shuijun Zhang; Yan Li; Shuguang Tan; George F Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-27       Impact factor: 11.205

10.  LILRA3 binds both classical and non-classical HLA class I molecules but with reduced affinities compared to LILRB1/LILRB2: structural evidence.

Authors:  Myongchol Ryu; Yong Chen; Jianxun Qi; Jun Liu; Zheng Fan; Gol Nam; Yi Shi; Hao Cheng; George F Gao
Journal:  PLoS One       Date:  2011-04-29       Impact factor: 3.240

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