Literature DB >> 21203225

(3R,4S,5S)-4-Hydr-oxy-3-methyl-5-[(2S,3R)-3-methyl-pent-4-en-2-yl]tetra-hydro-furan-2-one.

Annika Becker1, Markus Schürmann, Hans Preut, Martin Hiersemann.   

Abstract

The title compound, C(11)H(18)O(3), was synthesized to prove the relative configuration of the corresponding acyclic C1-C8 stereopentade. It crystallizes with two mol-ecules in the asymmetric unit, which show only slight differences. The mol-ecules are linked via O-H⋯O hydrogen bonds, resulting in two crystallographically independent chains of mol-ecules propagating in the a-axis direction. The absolute configuration was known from the synthesis.

Entities:  

Year:  2008        PMID: 21203225      PMCID: PMC2962143          DOI: 10.1107/S1600536808021181

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Abraham, Körner & Hiersemann (2004 ▶); Abraham, Körner, Schwab & Hiersemann (2004 ▶); Corey & Snider (1972 ▶); Evans et al. (1981 ▶, 1999 ▶); Körner & Hiersemann (2006 ▶, 2007 ▶); Pollex & Hiersemann (2005 ▶).

Experimental

Crystal data

C11H18O3 M = 198.25 Monoclinic, a = 6.2934 (13) Å b = 16.411 (3) Å c = 11.607 (2) Å β = 95.46 (3)° V = 1193.4 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 291 (1) K 0.30 × 0.28 × 0.20 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: none 9263 measured reflections 2268 independent reflections 1228 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.080 S = 1.06 2268 reflections 262 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.10 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808021181/hb2741sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808021181/hb2741Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H18O3F000 = 432
Mr = 198.25Dx = 1.103 Mg m3
Monoclinic, P21Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 9263 reflections
a = 6.2934 (13) Åθ = 3.0–25.4º
b = 16.411 (3) ŵ = 0.08 mm1
c = 11.607 (2) ÅT = 291 (1) K
β = 95.46 (3)ºBlock, colourless
V = 1193.4 (4) Å30.30 × 0.28 × 0.20 mm
Z = 4
Nonius KappaCCD diffractometer2268 independent reflections
Radiation source: fine-focus sealed tube1228 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.026
Detector resolution: 19 vertical, 18 horizontal pixels mm-1θmax = 25.4º
T = 291(1) Kθmin = 3.0º
259 frames via ω–rotation (Δω=1%) and two times 120 s per frame (three sets at different κ–angles) scansh = −7→7
Absorption correction: nonek = −19→19
9263 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.080  w = 1/[σ2(Fo2) + (0.0276P)2] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
2268 reflectionsΔρmax = 0.14 e Å3
262 parametersΔρmin = −0.10 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.042 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.2547 (2)0.96841 (13)0.63254 (16)0.0723 (6)
O20.1616 (3)0.91394 (14)0.55403 (19)0.0818 (7)
H20.27470.91600.52450.123*
O3−0.4523 (3)0.95694 (15)0.46477 (16)0.0804 (6)
C10.0831 (4)0.99366 (19)0.5670 (2)0.0699 (9)
H10.19791.03420.57000.084*
C2−0.0400 (4)0.9980 (2)0.6745 (2)0.0717 (9)
H2A−0.05121.05520.69710.086*
C3−0.2854 (5)0.9770 (2)0.5177 (3)0.0677 (8)
C4−0.0916 (4)1.0127 (2)0.4718 (2)0.0713 (9)
H4−0.11011.07200.47000.086*
C5−0.0562 (5)0.9858 (2)0.3503 (2)0.0963 (11)
H5A−0.02720.92840.35010.144*
H5B0.06291.01490.32460.144*
H5C−0.18180.99710.29920.144*
C60.0466 (4)0.9499 (2)0.7790 (2)0.0766 (9)
H60.06360.89340.75410.092*
C70.2689 (5)0.9825 (2)0.8203 (3)0.0999 (12)
H7A0.36680.96870.76470.150*
H7B0.31650.95850.89360.150*
H7C0.26281.04060.82830.150*
C8−0.1058 (5)0.9493 (3)0.8754 (3)0.0969 (12)
H8−0.24410.92990.83970.116*
C9−0.1446 (7)1.0344 (3)0.9243 (3)0.1352 (16)
H9A−0.24591.03060.98090.203*
H9B−0.19951.06980.86260.203*
H9C−0.01251.05600.95980.203*
C10−0.0295 (7)0.8869 (4)0.9651 (4)0.146 (2)
H100.00900.83780.93270.175*
C11−0.0089 (10)0.8863 (6)1.0604 (6)0.278 (5)
H11A−0.04280.93231.10170.333*
H11B0.04220.83981.09950.333*
O1'−0.6701 (3)0.71545 (13)0.46394 (18)0.0769 (6)
O2'−0.2446 (3)0.67928 (15)0.3828 (2)0.0935 (7)
H2'−0.13590.68680.35050.140*
O3'−0.8637 (4)0.71727 (16)0.29367 (18)0.0963 (8)
C1'−0.3349 (5)0.7549 (2)0.4080 (3)0.0777 (9)
H1'−0.22550.79740.42030.093*
C2'−0.4615 (4)0.7458 (2)0.5138 (3)0.0727 (9)
H2'1−0.48160.80000.54650.087*
C3'−0.7005 (5)0.7353 (2)0.3510 (3)0.0794 (10)
C4'−0.5091 (5)0.7794 (2)0.3145 (3)0.0839 (10)
H4'−0.53470.83790.32320.101*
C5'−0.4680 (6)0.7646 (3)0.1898 (3)0.1211 (15)
H5'1−0.34270.79400.17300.182*
H5'2−0.58830.78310.13960.182*
H5'3−0.44680.70740.17790.182*
C6'−0.3719 (4)0.6903 (2)0.6094 (3)0.0726 (9)
H6'−0.35150.63670.57490.087*
C7'−0.1534 (5)0.7211 (2)0.6567 (3)0.0986 (12)
H7'1−0.05660.71690.59780.148*
H7'2−0.10130.68880.72240.148*
H7'3−0.16420.77700.67970.148*
C8'−0.5233 (5)0.6788 (2)0.7046 (3)0.0773 (9)
H8'−0.66090.66230.66470.093*
C9'−0.5664 (6)0.7563 (3)0.7697 (3)0.1204 (14)
H9'1−0.43540.77600.80910.181*
H9'2−0.66640.74500.82520.181*
H9'3−0.62480.79680.71610.181*
C10'−0.4516 (6)0.6101 (3)0.7795 (4)0.1110 (13)
H10'−0.43280.56140.74080.133*
C11'−0.4126 (8)0.6067 (4)0.8851 (4)0.183 (3)
H11C−0.42760.65300.93000.220*
H11D−0.36790.55790.92030.220*
U11U22U33U12U13U23
O10.0470 (10)0.0854 (17)0.0864 (13)−0.0022 (11)0.0168 (9)0.0018 (13)
O20.0649 (13)0.0683 (17)0.1164 (16)0.0050 (11)0.0310 (12)0.0017 (13)
O30.0569 (12)0.0926 (18)0.0930 (13)−0.0018 (13)0.0134 (11)0.0007 (13)
C10.0543 (17)0.052 (2)0.106 (2)−0.0006 (16)0.0204 (16)−0.0009 (18)
C20.0513 (16)0.072 (3)0.094 (2)−0.0065 (16)0.0167 (15)−0.0091 (19)
C30.0549 (18)0.063 (2)0.088 (2)0.0086 (17)0.0190 (16)0.0012 (19)
C40.0609 (18)0.065 (2)0.090 (2)0.0004 (16)0.0210 (16)0.0089 (17)
C50.083 (2)0.112 (3)0.099 (2)−0.003 (2)0.0322 (17)0.004 (2)
C60.0509 (16)0.091 (3)0.0888 (19)−0.0027 (17)0.0115 (15)−0.007 (2)
C70.0603 (18)0.125 (4)0.115 (2)−0.008 (2)0.0097 (16)−0.012 (2)
C80.0648 (19)0.140 (4)0.087 (2)−0.003 (2)0.0156 (18)−0.007 (3)
C90.111 (3)0.173 (5)0.128 (3)0.024 (3)0.047 (3)−0.021 (3)
C100.106 (3)0.249 (7)0.086 (3)0.007 (4)0.027 (3)0.030 (4)
C110.147 (5)0.476 (16)0.222 (7)0.051 (7)0.075 (6)0.165 (9)
O1'0.0496 (11)0.0897 (18)0.0938 (14)−0.0022 (11)0.0186 (10)0.0066 (12)
O2'0.0718 (14)0.0719 (18)0.1435 (19)0.0044 (13)0.0446 (13)0.0045 (15)
O3'0.0646 (14)0.125 (2)0.1002 (15)−0.0110 (15)0.0131 (12)0.0065 (14)
C1'0.0634 (19)0.056 (2)0.117 (2)−0.0012 (17)0.0241 (19)0.003 (2)
C2'0.0534 (18)0.060 (2)0.106 (2)−0.0041 (16)0.0122 (16)−0.003 (2)
C3'0.060 (2)0.086 (3)0.095 (2)0.0041 (19)0.0236 (18)0.006 (2)
C4'0.073 (2)0.069 (3)0.112 (2)−0.0002 (18)0.0255 (19)0.011 (2)
C5'0.103 (3)0.153 (4)0.114 (3)−0.008 (3)0.045 (2)0.016 (3)
C6'0.0542 (17)0.064 (2)0.101 (2)0.0017 (16)0.0160 (16)−0.005 (2)
C7'0.0560 (18)0.097 (3)0.142 (3)−0.0047 (19)0.0043 (18)−0.004 (2)
C8'0.0616 (18)0.079 (3)0.092 (2)0.0030 (18)0.0084 (16)0.002 (2)
C9'0.107 (3)0.128 (4)0.128 (3)0.021 (3)0.019 (2)−0.026 (3)
C10'0.078 (2)0.149 (4)0.108 (3)0.001 (3)0.020 (2)0.015 (3)
C11'0.134 (4)0.252 (7)0.161 (4)0.028 (4)−0.001 (4)0.069 (5)
O1—C31.336 (3)O1'—C3'1.347 (3)
O1—C21.474 (3)O1'—C2'1.470 (3)
O2—C11.411 (3)O2'—C1'1.408 (4)
O2—H20.8200O2'—H2'0.8200
O3—C31.211 (3)O3'—C3'1.206 (3)
C1—C41.515 (4)C1'—C4'1.521 (4)
C1—C21.532 (4)C1'—C2'1.533 (4)
C1—H10.9800C1'—H1'0.9800
C2—C61.504 (4)C2'—C6'1.503 (4)
C2—H2A0.9800C2'—H2'10.9800
C3—C41.496 (4)C3'—C4'1.500 (5)
C4—C51.515 (4)C4'—C5'1.514 (4)
C4—H40.9800C4'—H4'0.9800
C5—H5A0.9600C5'—H5'10.9600
C5—H5B0.9600C5'—H5'20.9600
C5—H5C0.9600C5'—H5'30.9600
C6—C71.531 (4)C6'—C7'1.517 (4)
C6—C81.542 (4)C6'—C8'1.538 (4)
C6—H60.9800C6'—H6'0.9800
C7—H7A0.9600C7'—H7'10.9600
C7—H7B0.9600C7'—H7'20.9600
C7—H7C0.9600C7'—H7'30.9600
C8—C101.506 (7)C8'—C10'1.469 (6)
C8—C91.536 (6)C8'—C9'1.516 (5)
C8—H80.9800C8'—H8'0.9800
C9—H9A0.9600C9'—H9'10.9600
C9—H9B0.9600C9'—H9'20.9600
C9—H9C0.9600C9'—H9'30.9600
C10—C111.102 (6)C10'—C11'1.228 (5)
C10—H100.9300C10'—H10'0.9300
C11—H11A0.9300C11'—H11C0.9300
C11—H11B0.9300C11'—H11D0.9300
C3—O1—C2109.6 (2)C3'—O1'—C2'109.9 (2)
C1—O2—H2109.5C1'—O2'—H2'109.5
O2—C1—C4110.5 (3)O2'—C1'—C4'111.2 (3)
O2—C1—C2109.8 (2)O2'—C1'—C2'109.3 (3)
C4—C1—C2101.3 (2)C4'—C1'—C2'101.7 (2)
O2—C1—H1111.6O2'—C1'—H1'111.4
C4—C1—H1111.6C4'—C1'—H1'111.4
C2—C1—H1111.6C2'—C1'—H1'111.4
O1—C2—C6110.1 (2)O1'—C2'—C6'110.1 (2)
O1—C2—C1103.6 (2)O1'—C2'—C1'103.3 (2)
C6—C2—C1117.4 (2)C6'—C2'—C1'117.6 (2)
O1—C2—H2A108.5O1'—C2'—H2'1108.5
C6—C2—H2A108.5C6'—C2'—H2'1108.5
C1—C2—H2A108.5C1'—C2'—H2'1108.5
O3—C3—O1120.9 (2)O3'—C3'—O1'120.8 (3)
O3—C3—C4128.5 (3)O3'—C3'—C4'128.8 (3)
O1—C3—C4110.6 (3)O1'—C3'—C4'110.4 (3)
C3—C4—C5114.5 (3)C3'—C4'—C5'114.1 (3)
C3—C4—C1102.7 (2)C3'—C4'—C1'102.4 (3)
C5—C4—C1117.3 (2)C5'—C4'—C1'117.5 (3)
C3—C4—H4107.3C3'—C4'—H4'107.4
C5—C4—H4107.3C5'—C4'—H4'107.4
C1—C4—H4107.3C1'—C4'—H4'107.4
C4—C5—H5A109.5C4'—C5'—H5'1109.5
C4—C5—H5B109.5C4'—C5'—H5'2109.5
H5A—C5—H5B109.5H5'1—C5'—H5'2109.5
C4—C5—H5C109.5C4'—C5'—H5'3109.5
H5A—C5—H5C109.5H5'1—C5'—H5'3109.5
H5B—C5—H5C109.5H5'2—C5'—H5'3109.5
C2—C6—C7108.6 (3)C2'—C6'—C7'109.2 (3)
C2—C6—C8112.7 (3)C2'—C6'—C8'113.0 (2)
C7—C6—C8112.9 (2)C7'—C6'—C8'112.5 (3)
C2—C6—H6107.5C2'—C6'—H6'107.3
C7—C6—H6107.5C7'—C6'—H6'107.3
C8—C6—H6107.5C8'—C6'—H6'107.3
C6—C7—H7A109.5C6'—C7'—H7'1109.5
C6—C7—H7B109.5C6'—C7'—H7'2109.5
H7A—C7—H7B109.5H7'1—C7'—H7'2109.5
C6—C7—H7C109.5C6'—C7'—H7'3109.5
H7A—C7—H7C109.5H7'1—C7'—H7'3109.5
H7B—C7—H7C109.5H7'2—C7'—H7'3109.5
C10—C8—C9114.5 (3)C10'—C8'—C9'114.0 (3)
C10—C8—C6109.1 (3)C10'—C8'—C6'110.1 (3)
C9—C8—C6113.1 (3)C9'—C8'—C6'114.1 (3)
C10—C8—H8106.5C10'—C8'—H8'106.0
C9—C8—H8106.5C9'—C8'—H8'106.0
C6—C8—H8106.5C6'—C8'—H8'106.0
C8—C9—H9A109.5C8'—C9'—H9'1109.5
C8—C9—H9B109.5C8'—C9'—H9'2109.5
H9A—C9—H9B109.5H9'1—C9'—H9'2109.5
C8—C9—H9C109.5C8'—C9'—H9'3109.5
H9A—C9—H9C109.5H9'1—C9'—H9'3109.5
H9B—C9—H9C109.5H9'2—C9'—H9'3109.5
C11—C10—C8134.4 (8)C11'—C10'—C8'130.3 (5)
C11—C10—H10112.8C11'—C10'—H10'114.9
C8—C10—H10112.8C8'—C10'—H10'114.9
C10—C11—H11A120.0C10'—C11'—H11C120.0
C10—C11—H11B120.0C10'—C11'—H11D120.0
H11A—C11—H11B120.0H11C—C11'—H11D120.0
C3—O1—C2—C6−148.1 (3)C3'—O1'—C2'—C6'−149.0 (3)
C3—O1—C2—C1−21.8 (3)C3'—O1'—C2'—C1'−22.6 (3)
O2—C1—C2—O1−83.7 (3)O2'—C1'—C2'—O1'−84.1 (3)
C4—C1—C2—O133.2 (3)C4'—C1'—C2'—O1'33.5 (3)
O2—C1—C2—C637.9 (3)O2'—C1'—C2'—C6'37.4 (4)
C4—C1—C2—C6154.7 (3)C4'—C1'—C2'—C6'155.1 (3)
C2—O1—C3—O3−179.6 (3)C2'—O1'—C3'—O3'−178.9 (3)
C2—O1—C3—C40.5 (3)C2'—O1'—C3'—C4'1.6 (3)
O3—C3—C4—C5−30.6 (5)O3'—C3'—C4'—C5'−31.2 (6)
O1—C3—C4—C5149.3 (3)O1'—C3'—C4'—C5'148.3 (3)
O3—C3—C4—C1−158.8 (3)O3'—C3'—C4'—C1'−159.3 (4)
O1—C3—C4—C121.1 (3)O1'—C3'—C4'—C1'20.2 (4)
O2—C1—C4—C384.0 (3)O2'—C1'—C4'—C3'84.1 (3)
C2—C1—C4—C3−32.4 (3)C2'—C1'—C4'—C3'−32.2 (3)
O2—C1—C4—C5−42.5 (4)O2'—C1'—C4'—C5'−41.7 (4)
C2—C1—C4—C5−158.9 (3)C2'—C1'—C4'—C5'−158.0 (3)
O1—C2—C6—C7−179.8 (2)O1'—C2'—C6'—C7'178.0 (2)
C1—C2—C6—C762.1 (4)C1'—C2'—C6'—C7'60.1 (4)
O1—C2—C6—C8−54.0 (4)O1'—C2'—C6'—C8'−56.0 (4)
C1—C2—C6—C8−172.1 (3)C1'—C2'—C6'—C8'−173.9 (3)
C2—C6—C8—C10168.6 (3)C2'—C6'—C8'—C10'166.5 (3)
C7—C6—C8—C10−67.9 (5)C7'—C6'—C8'—C10'−69.3 (4)
C2—C6—C8—C9−62.7 (4)C2'—C6'—C8'—C9'−63.8 (4)
C7—C6—C8—C960.8 (4)C7'—C6'—C8'—C9'60.4 (4)
C9—C8—C10—C117.2 (9)C9'—C8'—C10'—C11'−3.6 (7)
C6—C8—C10—C11135.1 (8)C6'—C8'—C10'—C11'126.1 (5)
D—H···AD—HH···AD···AD—H···A
O2—H2···O3i0.822.032.821 (3)163
O2'—H2'···O3'i0.821.962.771 (3)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O3i0.822.032.821 (3)163
O2′—H2′⋯O3′i0.821.962.771 (3)171

Symmetry code: (i) .

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