| Literature DB >> 21203223 |
Cong Zhao1, Wen-Ge Yang, Yong-Hong Hu, Lei Shen, Xiu-Tao Lu.
Abstract
The asymmetric unit of the title compound, C(5)H(11)N(5)O(2), contains two independent mol-ecules. The twoEntities:
Year: 2008 PMID: 21203223 PMCID: PMC2962141 DOI: 10.1107/S1600536808021533
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H11N5O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 25 reflections |
| θ = 9–12º | |
| µ = 0.11 mm−1 | |
| β = 104.19 (3)º | Block, colorless |
| 0.30 × 0.10 × 0.10 mm | |
| Enraf–Nonius CAD-4 diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 25.2º |
| Monochromator: graphite | θmin = 1.4º |
| ω/2θ scans | |
| Absorption correction: ψ scan(North | |
| 3 standard reflections | |
| 3126 measured reflections | every 120 min |
| 2873 independent reflections | intensity decay: none |
| 1979 reflections with |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 2873 reflections | Δρmax = 0.36 e Å−3 |
| 217 parameters | Δρmin = −0.37 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.4157 (7) | 0.16494 (15) | 0.6298 (4) | 0.0982 (15) | |
| O2 | 0.2294 (5) | 0.22215 (11) | 0.5490 (4) | 0.0699 (10) | |
| N1 | 0.3763 (5) | 0.19429 (11) | 1.0927 (4) | 0.0447 (8) | |
| N2 | 0.4955 (5) | 0.14315 (11) | 0.9359 (4) | 0.0466 (8) | |
| H2A | 0.5027 | 0.1334 | 0.8400 | 0.056* | |
| N3 | 0.6537 (5) | 0.14525 (12) | 1.2299 (4) | 0.0501 (9) | |
| N4 | 0.3096 (5) | 0.20872 (11) | 0.8150 (4) | 0.0469 (8) | |
| N5 | 0.3202 (5) | 0.19792 (13) | 0.6628 (4) | 0.0549 (10) | |
| C1 | 0.8312 (7) | 0.17403 (17) | 1.2213 (7) | 0.0731 (15) | |
| H1A | 0.8666 | 0.1925 | 1.3184 | 0.110* | |
| H1B | 0.7939 | 0.1924 | 1.1238 | 0.110* | |
| H1C | 0.9481 | 0.1559 | 1.2160 | 0.110* | |
| C2 | 0.2708 (8) | 0.23592 (15) | 1.1160 (6) | 0.0616 (12) | |
| H2B | 0.2130 | 0.2493 | 1.0097 | 0.092* | |
| H2C | 0.3688 | 0.2559 | 1.1835 | 0.092* | |
| H2D | 0.1617 | 0.2297 | 1.1701 | 0.092* | |
| C3 | 0.3970 (6) | 0.18117 (13) | 0.9446 (5) | 0.0442 (9) | |
| C4 | 0.5922 (7) | 0.11728 (14) | 1.0841 (5) | 0.0500 (10) | |
| H4B | 0.4951 | 0.0950 | 1.1029 | 0.060* | |
| H4C | 0.7132 | 0.1020 | 1.0657 | 0.060* | |
| C5 | 0.4757 (8) | 0.16943 (17) | 1.2470 (5) | 0.0621 (13) | |
| H5A | 0.5162 | 0.1902 | 1.3387 | 0.075* | |
| H5B | 0.3757 | 0.1489 | 1.2734 | 0.075* | |
| O3 | 0.0455 (5) | 0.07427 (13) | 0.2450 (4) | 0.0804 (12) | |
| O4 | 0.3371 (5) | 0.04202 (11) | 0.2690 (4) | 0.0640 (9) | |
| N6 | −0.1841 (5) | 0.09106 (11) | 0.7596 (4) | 0.0466 (8) | |
| N7 | −0.1239 (4) | 0.07164 (11) | 0.4938 (4) | 0.0421 (8) | |
| H7A | −0.1508 | 0.0788 | 0.3904 | 0.051* | |
| N8 | 0.0994 (5) | 0.04358 (11) | 0.7263 (4) | 0.0429 (8) | |
| N9 | 0.2160 (5) | 0.04411 (11) | 0.4922 (4) | 0.0424 (8) | |
| N10 | 0.1942 (5) | 0.05374 (11) | 0.3332 (4) | 0.0426 (8) | |
| C6 | −0.0729 (8) | 0.13372 (16) | 0.7715 (7) | 0.0729 (15) | |
| H6A | −0.0136 | 0.1407 | 0.8863 | 0.109* | |
| H6B | −0.1680 | 0.1567 | 0.7221 | 0.109* | |
| H6C | 0.0355 | 0.1316 | 0.7138 | 0.109* | |
| C7 | 0.2916 (7) | 0.02129 (16) | 0.8125 (5) | 0.0579 (12) | |
| H7B | 0.3745 | 0.0154 | 0.7351 | 0.087* | |
| H7C | 0.2587 | −0.0062 | 0.8589 | 0.087* | |
| H7D | 0.3674 | 0.0401 | 0.9001 | 0.087* | |
| C8 | −0.0443 (6) | 0.05545 (15) | 0.8268 (5) | 0.0486 (10) | |
| H8A | −0.1253 | 0.0294 | 0.8391 | 0.058* | |
| H8B | 0.0352 | 0.0639 | 0.9369 | 0.058* | |
| C9 | −0.2774 (6) | 0.07940 (15) | 0.5863 (5) | 0.0481 (10) | |
| H9B | −0.3612 | 0.0529 | 0.5830 | 0.058* | |
| H9C | −0.3682 | 0.1033 | 0.5342 | 0.058* | |
| C10 | 0.0585 (5) | 0.05359 (12) | 0.5651 (4) | 0.0371 (8) |
| O1 | 0.131 (3) | 0.121 (3) | 0.0415 (19) | 0.080 (3) | 0.019 (2) | 0.023 (2) |
| O2 | 0.085 (2) | 0.070 (2) | 0.0385 (16) | 0.0103 (18) | −0.0163 (15) | 0.0154 (15) |
| N1 | 0.0489 (19) | 0.050 (2) | 0.0296 (16) | 0.0062 (15) | −0.0016 (14) | 0.0029 (14) |
| N2 | 0.053 (2) | 0.050 (2) | 0.0286 (16) | 0.0079 (16) | −0.0075 (14) | 0.0035 (14) |
| N3 | 0.054 (2) | 0.054 (2) | 0.0308 (17) | 0.0081 (17) | −0.0110 (14) | 0.0006 (15) |
| N4 | 0.050 (2) | 0.051 (2) | 0.0281 (17) | −0.0018 (16) | −0.0123 (14) | 0.0093 (14) |
| N5 | 0.049 (2) | 0.059 (2) | 0.043 (2) | 0.0020 (18) | −0.0152 (16) | 0.0148 (18) |
| C1 | 0.056 (3) | 0.058 (3) | 0.082 (4) | −0.009 (2) | −0.026 (3) | −0.001 (3) |
| C2 | 0.068 (3) | 0.058 (3) | 0.055 (3) | 0.011 (2) | 0.007 (2) | 0.002 (2) |
| C3 | 0.039 (2) | 0.043 (2) | 0.039 (2) | −0.0049 (17) | −0.0137 (16) | 0.0054 (17) |
| C4 | 0.059 (3) | 0.044 (2) | 0.036 (2) | −0.0027 (19) | −0.0087 (18) | 0.0081 (18) |
| C5 | 0.075 (3) | 0.070 (3) | 0.033 (2) | 0.017 (3) | −0.004 (2) | 0.010 (2) |
| O3 | 0.080 (2) | 0.117 (3) | 0.0414 (17) | 0.052 (2) | 0.0087 (16) | 0.0229 (18) |
| O4 | 0.0575 (19) | 0.079 (2) | 0.0566 (19) | 0.0107 (17) | 0.0153 (15) | 0.0055 (16) |
| N6 | 0.0420 (18) | 0.051 (2) | 0.0409 (18) | −0.0008 (15) | −0.0012 (14) | −0.0055 (16) |
| N7 | 0.0349 (17) | 0.059 (2) | 0.0275 (16) | 0.0067 (15) | −0.0026 (13) | 0.0045 (14) |
| N8 | 0.0411 (18) | 0.053 (2) | 0.0274 (16) | 0.0113 (15) | −0.0043 (13) | 0.0025 (14) |
| N9 | 0.0380 (17) | 0.050 (2) | 0.0326 (17) | 0.0027 (14) | −0.0036 (13) | 0.0066 (14) |
| N10 | 0.0430 (18) | 0.045 (2) | 0.0373 (17) | 0.0064 (15) | 0.0054 (14) | 0.0010 (14) |
| C6 | 0.065 (3) | 0.057 (3) | 0.094 (4) | −0.012 (2) | 0.015 (3) | −0.022 (3) |
| C7 | 0.054 (3) | 0.072 (3) | 0.038 (2) | 0.016 (2) | −0.0067 (19) | 0.012 (2) |
| C8 | 0.050 (2) | 0.061 (3) | 0.031 (2) | 0.001 (2) | 0.0023 (17) | 0.0038 (18) |
| C9 | 0.036 (2) | 0.064 (3) | 0.040 (2) | 0.0028 (19) | 0.0014 (16) | 0.0006 (19) |
| C10 | 0.0341 (19) | 0.035 (2) | 0.0353 (19) | −0.0013 (15) | −0.0040 (15) | −0.0016 (15) |
| O1—N5 | 1.245 (5) | O3—N10 | 1.241 (4) |
| O2—N5 | 1.228 (4) | O4—N10 | 1.249 (4) |
| N1—C3 | 1.329 (5) | N6—C8 | 1.439 (5) |
| N1—C2 | 1.472 (5) | N6—C9 | 1.461 (5) |
| N1—C5 | 1.490 (5) | N6—C6 | 1.473 (6) |
| N2—C3 | 1.329 (5) | N7—C10 | 1.328 (4) |
| N2—C4 | 1.464 (5) | N7—C9 | 1.438 (5) |
| N2—H2A | 0.8600 | N7—H7A | 0.8600 |
| N3—C5 | 1.426 (6) | N8—C10 | 1.332 (5) |
| N3—C4 | 1.448 (5) | N8—C8 | 1.458 (5) |
| N3—C1 | 1.480 (6) | N8—C7 | 1.465 (5) |
| N4—N5 | 1.322 (5) | N9—N10 | 1.323 (4) |
| N4—C3 | 1.369 (5) | N9—C10 | 1.362 (5) |
| C1—H1A | 0.9600 | C6—H6A | 0.9600 |
| C1—H1B | 0.9600 | C6—H6B | 0.9600 |
| C1—H1C | 0.9600 | C6—H6C | 0.9600 |
| C2—H2B | 0.9600 | C7—H7B | 0.9600 |
| C2—H2C | 0.9600 | C7—H7C | 0.9600 |
| C2—H2D | 0.9600 | C7—H7D | 0.9600 |
| C4—H4B | 0.9700 | C8—H8A | 0.9700 |
| C4—H4C | 0.9700 | C8—H8B | 0.9700 |
| C5—H5A | 0.9700 | C9—H9B | 0.9700 |
| C5—H5B | 0.9700 | C9—H9C | 0.9700 |
| C3—N1—C2 | 122.4 (3) | C8—N6—C9 | 106.3 (3) |
| C3—N1—C5 | 121.3 (3) | C8—N6—C6 | 110.9 (3) |
| C2—N1—C5 | 116.1 (3) | C9—N6—C6 | 111.1 (4) |
| C3—N2—C4 | 122.3 (3) | C10—N7—C9 | 121.2 (3) |
| C3—N2—H2A | 118.9 | C10—N7—H7A | 119.4 |
| C4—N2—H2A | 118.9 | C9—N7—H7A | 119.4 |
| C5—N3—C4 | 108.0 (3) | C10—N8—C8 | 121.2 (3) |
| C5—N3—C1 | 113.4 (4) | C10—N8—C7 | 122.2 (3) |
| C4—N3—C1 | 111.4 (4) | C8—N8—C7 | 116.6 (3) |
| N5—N4—C3 | 119.3 (4) | N10—N9—C10 | 119.2 (3) |
| O2—N5—O1 | 119.1 (4) | O3—N10—O4 | 118.0 (3) |
| O2—N5—N4 | 117.2 (4) | O3—N10—N9 | 125.0 (3) |
| O1—N5—N4 | 123.7 (3) | O4—N10—N9 | 117.0 (3) |
| N3—C1—H1A | 109.5 | N6—C6—H6A | 109.5 |
| N3—C1—H1B | 109.5 | N6—C6—H6B | 109.5 |
| H1A—C1—H1B | 109.5 | H6A—C6—H6B | 109.5 |
| N3—C1—H1C | 109.5 | N6—C6—H6C | 109.5 |
| H1A—C1—H1C | 109.5 | H6A—C6—H6C | 109.5 |
| H1B—C1—H1C | 109.5 | H6B—C6—H6C | 109.5 |
| N1—C2—H2B | 109.5 | N8—C7—H7B | 109.5 |
| N1—C2—H2C | 109.5 | N8—C7—H7C | 109.5 |
| H2B—C2—H2C | 109.5 | H7B—C7—H7C | 109.5 |
| N1—C2—H2D | 109.5 | N8—C7—H7D | 109.5 |
| H2B—C2—H2D | 109.5 | H7B—C7—H7D | 109.5 |
| H2C—C2—H2D | 109.5 | H7C—C7—H7D | 109.5 |
| N1—C3—N2 | 118.0 (3) | N6—C8—N8 | 114.4 (3) |
| N1—C3—N4 | 115.2 (4) | N6—C8—H8A | 108.7 |
| N2—C3—N4 | 126.8 (4) | N8—C8—H8A | 108.7 |
| N3—C4—N2 | 111.6 (3) | N6—C8—H8B | 108.7 |
| N3—C4—H4B | 109.3 | N8—C8—H8B | 108.7 |
| N2—C4—H4B | 109.3 | H8A—C8—H8B | 107.6 |
| N3—C4—H4C | 109.3 | N7—C9—N6 | 112.2 (3) |
| N2—C4—H4C | 109.3 | N7—C9—H9B | 109.2 |
| H4B—C4—H4C | 108.0 | N6—C9—H9B | 109.2 |
| N3—C5—N1 | 112.0 (4) | N7—C9—H9C | 109.2 |
| N3—C5—H5A | 109.2 | N6—C9—H9C | 109.2 |
| N1—C5—H5A | 109.2 | H9B—C9—H9C | 107.9 |
| N3—C5—H5B | 109.2 | N7—C10—N8 | 118.6 (3) |
| N1—C5—H5B | 109.2 | N7—C10—N9 | 127.3 (3) |
| H5A—C5—H5B | 107.9 | N8—C10—N9 | 114.1 (3) |
| C3—N4—N5—O2 | 175.8 (4) | C10—N9—N10—O3 | 5.9 (6) |
| C3—N4—N5—O1 | −4.1 (6) | C10—N9—N10—O4 | −175.7 (3) |
| C2—N1—C3—N2 | 179.7 (4) | C9—N6—C8—N8 | 50.4 (4) |
| C5—N1—C3—N2 | 5.2 (6) | C6—N6—C8—N8 | −70.5 (5) |
| C2—N1—C3—N4 | −1.2 (6) | C10—N8—C8—N6 | −21.6 (5) |
| C5—N1—C3—N4 | −175.7 (4) | C7—N8—C8—N6 | 156.9 (4) |
| C4—N2—C3—N1 | −4.1 (6) | C10—N7—C9—N6 | 33.9 (5) |
| C4—N2—C3—N4 | 176.9 (4) | C8—N6—C9—N7 | −56.1 (4) |
| N5—N4—C3—N1 | −179.0 (3) | C6—N6—C9—N7 | 64.7 (5) |
| N5—N4—C3—N2 | 0.0 (6) | C9—N7—C10—N8 | −1.5 (5) |
| C5—N3—C4—N2 | 55.1 (5) | C9—N7—C10—N9 | 179.4 (4) |
| C1—N3—C4—N2 | −70.1 (4) | C8—N8—C10—N7 | −5.1 (5) |
| C3—N2—C4—N3 | −27.1 (5) | C7—N8—C10—N7 | 176.4 (4) |
| C4—N3—C5—N1 | −54.2 (5) | C8—N8—C10—N9 | 174.1 (3) |
| C1—N3—C5—N1 | 69.8 (5) | C7—N8—C10—N9 | −4.3 (5) |
| C3—N1—C5—N3 | 25.4 (6) | N10—N9—C10—N7 | 0.9 (6) |
| C2—N1—C5—N3 | −149.4 (4) | N10—N9—C10—N8 | −178.3 (3) |
| H··· | ||||
| N2—H2A···O1 | 0.86 | 1.94 | 2.549 (5) | 126 |
| N7—H7A···O3 | 0.86 | 1.99 | 2.583 (5) | 126 |
| N7—H7A···N3i | 0.86 | 2.57 | 3.210 (5) | 132 |
| C1—H1C···O3ii | 0.96 | 2.54 | 3.309 (6) | 137 |
| C2—H2B···N4 | 0.96 | 2.24 | 2.699 (6) | 108 |
| C4—H4B···O4iii | 0.97 | 2.50 | 3.411 (6) | 156 |
| C4—H4C···O3ii | 0.97 | 2.49 | 3.251 (6) | 136 |
| C7—H7B···N9 | 0.96 | 2.21 | 2.670 (5) | 108 |
| C7—H7B···O4iv | 0.96 | 2.59 | 3.317 (6) | 133 |
| C8—H8B···O3iii | 0.97 | 2.56 | 3.420 (5) | 148 |
| C9—H9C···O1v | 0.97 | 2.59 | 3.359 (6) | 137 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 1.94 | 2.549 (5) | 126 |
| N7—H7 | 0.86 | 1.99 | 2.583 (5) | 126 |
| N7—H7 | 0.86 | 2.57 | 3.210 (5) | 132 |
| C1—H1 | 0.96 | 2.54 | 3.309 (6) | 137 |
| C2—H2 | 0.96 | 2.24 | 2.699 (6) | 108 |
| C4—H4 | 0.97 | 2.50 | 3.411 (6) | 156 |
| C4—H4 | 0.97 | 2.49 | 3.251 (6) | 136 |
| C7—H7 | 0.96 | 2.21 | 2.670 (5) | 108 |
| C7—H7 | 0.96 | 2.59 | 3.317 (6) | 133 |
| C8—H8 | 0.97 | 2.56 | 3.420 (5) | 148 |
| C9—H9 | 0.97 | 2.59 | 3.359 (6) | 137 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .