Literature DB >> 21203223

1,5-Dimethyl-2-nitro-imino-1,3,5-tri-azinane.

Cong Zhao1, Wen-Ge Yang, Yong-Hong Hu, Lei Shen, Xiu-Tao Lu.   

Abstract

The asymmetric unit of the title compound, C(5)H(11)N(5)O(2), contains two independent mol-ecules. The two n class="Chemical">triazine rings adopt envelope conformations. Intra-molecular C-H⋯N and N-H⋯O hydrogen bonds result in the formation of two five- and two six-membered rings which are nearly planar; in addition, they are also nearly coplanar. In the crystal structure, inter-molecular N-H⋯N, C-H⋯N and C-H⋯O hydrogen bonds link the mol-ecules.

Entities:  

Year:  2008        PMID: 21203223      PMCID: PMC2962141          DOI: 10.1107/S1600536808021533

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Wakita et al. (2003 ▶). For related literature, see: Shiokawa et al. (1991 ▶).

Experimental

Crystal data

C5H11N5O2 M = 173.19 Monoclinic, a = 6.6490 (13) Å b = 30.103 (6) Å c = 8.2940 (17) Å β = 104.19 (3)° V = 1609.4 (6) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 294 (2) K 0.30 × 0.10 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.967, T max = 0.989 3126 measured reflections 2873 independent reflections 1979 reflections with I > 2σ(I) R int = 0.037 3 standard reflections frequency: 120 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.072 wR(F 2) = 0.194 S = 1.00 2873 reflections 217 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.38 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808021533/hk2491sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808021533/hk2491Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H11N5O2F000 = 736
Mr = 173.19Dx = 1.430 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 25 reflections
a = 6.6490 (13) Åθ = 9–12º
b = 30.103 (6) ŵ = 0.11 mm1
c = 8.2940 (17) ÅT = 294 (2) K
β = 104.19 (3)ºBlock, colorless
V = 1609.4 (6) Å30.30 × 0.10 × 0.10 mm
Z = 8
Enraf–Nonius CAD-4 diffractometerRint = 0.037
Radiation source: fine-focus sealed tubeθmax = 25.2º
Monochromator: graphiteθmin = 1.4º
T = 294(2) Kh = −7→7
ω/2θ scansk = 0→36
Absorption correction: ψ scan(North et al., 1968)l = 0→9
Tmin = 0.967, Tmax = 0.9893 standard reflections
3126 measured reflections every 120 min
2873 independent reflections intensity decay: none
1979 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.072H-atom parameters constrained
wR(F2) = 0.194  w = 1/[σ2(Fo2) + (0.06P)2 + 4P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
2873 reflectionsΔρmax = 0.36 e Å3
217 parametersΔρmin = −0.37 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4157 (7)0.16494 (15)0.6298 (4)0.0982 (15)
O20.2294 (5)0.22215 (11)0.5490 (4)0.0699 (10)
N10.3763 (5)0.19429 (11)1.0927 (4)0.0447 (8)
N20.4955 (5)0.14315 (11)0.9359 (4)0.0466 (8)
H2A0.50270.13340.84000.056*
N30.6537 (5)0.14525 (12)1.2299 (4)0.0501 (9)
N40.3096 (5)0.20872 (11)0.8150 (4)0.0469 (8)
N50.3202 (5)0.19792 (13)0.6628 (4)0.0549 (10)
C10.8312 (7)0.17403 (17)1.2213 (7)0.0731 (15)
H1A0.86660.19251.31840.110*
H1B0.79390.19241.12380.110*
H1C0.94810.15591.21600.110*
C20.2708 (8)0.23592 (15)1.1160 (6)0.0616 (12)
H2B0.21300.24931.00970.092*
H2C0.36880.25591.18350.092*
H2D0.16170.22971.17010.092*
C30.3970 (6)0.18117 (13)0.9446 (5)0.0442 (9)
C40.5922 (7)0.11728 (14)1.0841 (5)0.0500 (10)
H4B0.49510.09501.10290.060*
H4C0.71320.10201.06570.060*
C50.4757 (8)0.16943 (17)1.2470 (5)0.0621 (13)
H5A0.51620.19021.33870.075*
H5B0.37570.14891.27340.075*
O30.0455 (5)0.07427 (13)0.2450 (4)0.0804 (12)
O40.3371 (5)0.04202 (11)0.2690 (4)0.0640 (9)
N6−0.1841 (5)0.09106 (11)0.7596 (4)0.0466 (8)
N7−0.1239 (4)0.07164 (11)0.4938 (4)0.0421 (8)
H7A−0.15080.07880.39040.051*
N80.0994 (5)0.04358 (11)0.7263 (4)0.0429 (8)
N90.2160 (5)0.04411 (11)0.4922 (4)0.0424 (8)
N100.1942 (5)0.05374 (11)0.3332 (4)0.0426 (8)
C6−0.0729 (8)0.13372 (16)0.7715 (7)0.0729 (15)
H6A−0.01360.14070.88630.109*
H6B−0.16800.15670.72210.109*
H6C0.03550.13160.71380.109*
C70.2916 (7)0.02129 (16)0.8125 (5)0.0579 (12)
H7B0.37450.01540.73510.087*
H7C0.2587−0.00620.85890.087*
H7D0.36740.04010.90010.087*
C8−0.0443 (6)0.05545 (15)0.8268 (5)0.0486 (10)
H8A−0.12530.02940.83910.058*
H8B0.03520.06390.93690.058*
C9−0.2774 (6)0.07940 (15)0.5863 (5)0.0481 (10)
H9B−0.36120.05290.58300.058*
H9C−0.36820.10330.53420.058*
C100.0585 (5)0.05359 (12)0.5651 (4)0.0371 (8)
U11U22U33U12U13U23
O10.131 (3)0.121 (3)0.0415 (19)0.080 (3)0.019 (2)0.023 (2)
O20.085 (2)0.070 (2)0.0385 (16)0.0103 (18)−0.0163 (15)0.0154 (15)
N10.0489 (19)0.050 (2)0.0296 (16)0.0062 (15)−0.0016 (14)0.0029 (14)
N20.053 (2)0.050 (2)0.0286 (16)0.0079 (16)−0.0075 (14)0.0035 (14)
N30.054 (2)0.054 (2)0.0308 (17)0.0081 (17)−0.0110 (14)0.0006 (15)
N40.050 (2)0.051 (2)0.0281 (17)−0.0018 (16)−0.0123 (14)0.0093 (14)
N50.049 (2)0.059 (2)0.043 (2)0.0020 (18)−0.0152 (16)0.0148 (18)
C10.056 (3)0.058 (3)0.082 (4)−0.009 (2)−0.026 (3)−0.001 (3)
C20.068 (3)0.058 (3)0.055 (3)0.011 (2)0.007 (2)0.002 (2)
C30.039 (2)0.043 (2)0.039 (2)−0.0049 (17)−0.0137 (16)0.0054 (17)
C40.059 (3)0.044 (2)0.036 (2)−0.0027 (19)−0.0087 (18)0.0081 (18)
C50.075 (3)0.070 (3)0.033 (2)0.017 (3)−0.004 (2)0.010 (2)
O30.080 (2)0.117 (3)0.0414 (17)0.052 (2)0.0087 (16)0.0229 (18)
O40.0575 (19)0.079 (2)0.0566 (19)0.0107 (17)0.0153 (15)0.0055 (16)
N60.0420 (18)0.051 (2)0.0409 (18)−0.0008 (15)−0.0012 (14)−0.0055 (16)
N70.0349 (17)0.059 (2)0.0275 (16)0.0067 (15)−0.0026 (13)0.0045 (14)
N80.0411 (18)0.053 (2)0.0274 (16)0.0113 (15)−0.0043 (13)0.0025 (14)
N90.0380 (17)0.050 (2)0.0326 (17)0.0027 (14)−0.0036 (13)0.0066 (14)
N100.0430 (18)0.045 (2)0.0373 (17)0.0064 (15)0.0054 (14)0.0010 (14)
C60.065 (3)0.057 (3)0.094 (4)−0.012 (2)0.015 (3)−0.022 (3)
C70.054 (3)0.072 (3)0.038 (2)0.016 (2)−0.0067 (19)0.012 (2)
C80.050 (2)0.061 (3)0.031 (2)0.001 (2)0.0023 (17)0.0038 (18)
C90.036 (2)0.064 (3)0.040 (2)0.0028 (19)0.0014 (16)0.0006 (19)
C100.0341 (19)0.035 (2)0.0353 (19)−0.0013 (15)−0.0040 (15)−0.0016 (15)
O1—N51.245 (5)O3—N101.241 (4)
O2—N51.228 (4)O4—N101.249 (4)
N1—C31.329 (5)N6—C81.439 (5)
N1—C21.472 (5)N6—C91.461 (5)
N1—C51.490 (5)N6—C61.473 (6)
N2—C31.329 (5)N7—C101.328 (4)
N2—C41.464 (5)N7—C91.438 (5)
N2—H2A0.8600N7—H7A0.8600
N3—C51.426 (6)N8—C101.332 (5)
N3—C41.448 (5)N8—C81.458 (5)
N3—C11.480 (6)N8—C71.465 (5)
N4—N51.322 (5)N9—N101.323 (4)
N4—C31.369 (5)N9—C101.362 (5)
C1—H1A0.9600C6—H6A0.9600
C1—H1B0.9600C6—H6B0.9600
C1—H1C0.9600C6—H6C0.9600
C2—H2B0.9600C7—H7B0.9600
C2—H2C0.9600C7—H7C0.9600
C2—H2D0.9600C7—H7D0.9600
C4—H4B0.9700C8—H8A0.9700
C4—H4C0.9700C8—H8B0.9700
C5—H5A0.9700C9—H9B0.9700
C5—H5B0.9700C9—H9C0.9700
C3—N1—C2122.4 (3)C8—N6—C9106.3 (3)
C3—N1—C5121.3 (3)C8—N6—C6110.9 (3)
C2—N1—C5116.1 (3)C9—N6—C6111.1 (4)
C3—N2—C4122.3 (3)C10—N7—C9121.2 (3)
C3—N2—H2A118.9C10—N7—H7A119.4
C4—N2—H2A118.9C9—N7—H7A119.4
C5—N3—C4108.0 (3)C10—N8—C8121.2 (3)
C5—N3—C1113.4 (4)C10—N8—C7122.2 (3)
C4—N3—C1111.4 (4)C8—N8—C7116.6 (3)
N5—N4—C3119.3 (4)N10—N9—C10119.2 (3)
O2—N5—O1119.1 (4)O3—N10—O4118.0 (3)
O2—N5—N4117.2 (4)O3—N10—N9125.0 (3)
O1—N5—N4123.7 (3)O4—N10—N9117.0 (3)
N3—C1—H1A109.5N6—C6—H6A109.5
N3—C1—H1B109.5N6—C6—H6B109.5
H1A—C1—H1B109.5H6A—C6—H6B109.5
N3—C1—H1C109.5N6—C6—H6C109.5
H1A—C1—H1C109.5H6A—C6—H6C109.5
H1B—C1—H1C109.5H6B—C6—H6C109.5
N1—C2—H2B109.5N8—C7—H7B109.5
N1—C2—H2C109.5N8—C7—H7C109.5
H2B—C2—H2C109.5H7B—C7—H7C109.5
N1—C2—H2D109.5N8—C7—H7D109.5
H2B—C2—H2D109.5H7B—C7—H7D109.5
H2C—C2—H2D109.5H7C—C7—H7D109.5
N1—C3—N2118.0 (3)N6—C8—N8114.4 (3)
N1—C3—N4115.2 (4)N6—C8—H8A108.7
N2—C3—N4126.8 (4)N8—C8—H8A108.7
N3—C4—N2111.6 (3)N6—C8—H8B108.7
N3—C4—H4B109.3N8—C8—H8B108.7
N2—C4—H4B109.3H8A—C8—H8B107.6
N3—C4—H4C109.3N7—C9—N6112.2 (3)
N2—C4—H4C109.3N7—C9—H9B109.2
H4B—C4—H4C108.0N6—C9—H9B109.2
N3—C5—N1112.0 (4)N7—C9—H9C109.2
N3—C5—H5A109.2N6—C9—H9C109.2
N1—C5—H5A109.2H9B—C9—H9C107.9
N3—C5—H5B109.2N7—C10—N8118.6 (3)
N1—C5—H5B109.2N7—C10—N9127.3 (3)
H5A—C5—H5B107.9N8—C10—N9114.1 (3)
C3—N4—N5—O2175.8 (4)C10—N9—N10—O35.9 (6)
C3—N4—N5—O1−4.1 (6)C10—N9—N10—O4−175.7 (3)
C2—N1—C3—N2179.7 (4)C9—N6—C8—N850.4 (4)
C5—N1—C3—N25.2 (6)C6—N6—C8—N8−70.5 (5)
C2—N1—C3—N4−1.2 (6)C10—N8—C8—N6−21.6 (5)
C5—N1—C3—N4−175.7 (4)C7—N8—C8—N6156.9 (4)
C4—N2—C3—N1−4.1 (6)C10—N7—C9—N633.9 (5)
C4—N2—C3—N4176.9 (4)C8—N6—C9—N7−56.1 (4)
N5—N4—C3—N1−179.0 (3)C6—N6—C9—N764.7 (5)
N5—N4—C3—N20.0 (6)C9—N7—C10—N8−1.5 (5)
C5—N3—C4—N255.1 (5)C9—N7—C10—N9179.4 (4)
C1—N3—C4—N2−70.1 (4)C8—N8—C10—N7−5.1 (5)
C3—N2—C4—N3−27.1 (5)C7—N8—C10—N7176.4 (4)
C4—N3—C5—N1−54.2 (5)C8—N8—C10—N9174.1 (3)
C1—N3—C5—N169.8 (5)C7—N8—C10—N9−4.3 (5)
C3—N1—C5—N325.4 (6)N10—N9—C10—N70.9 (6)
C2—N1—C5—N3−149.4 (4)N10—N9—C10—N8−178.3 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.861.942.549 (5)126
N7—H7A···O30.861.992.583 (5)126
N7—H7A···N3i0.862.573.210 (5)132
C1—H1C···O3ii0.962.543.309 (6)137
C2—H2B···N40.962.242.699 (6)108
C4—H4B···O4iii0.972.503.411 (6)156
C4—H4C···O3ii0.972.493.251 (6)136
C7—H7B···N90.962.212.670 (5)108
C7—H7B···O4iv0.962.593.317 (6)133
C8—H8B···O3iii0.972.563.420 (5)148
C9—H9C···O1v0.972.593.359 (6)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O10.861.942.549 (5)126
N7—H7A⋯O30.861.992.583 (5)126
N7—H7A⋯N3i0.862.573.210 (5)132
C1—H1C⋯O3ii0.962.543.309 (6)137
C2—H2B⋯N40.962.242.699 (6)108
C4—H4B⋯O4iii0.972.503.411 (6)156
C4—H4C⋯O3ii0.972.493.251 (6)136
C7—H7B⋯N90.962.212.670 (5)108
C7—H7B⋯O4iv0.962.593.317 (6)133
C8—H8B⋯O3iii0.972.563.420 (5)148
C9—H9C⋯O1v0.972.593.359 (6)137

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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