Literature DB >> 21203219

(E)-1-(2-Thien-yl)-3-(2,4,5-trimethoxy-phen-yl)prop-2-en-1-one.

Hoong-Kun Fun, Samuel Robinson Jebas, P S Patil, S M Dharmaprakash.   

Abstract

In the title mol-ecule, C(16)H(16)O(4)S, the enone fragment, thio-phene ring and benzene ring are individually essentially planar. The thio-phene ring is disordered over two sites, corresponding to a rotation of approximately 180° about the single C-C bond to which it is attached. The approximate ratio of occupancies for the major and minor components is 0.872 (2):0.128 (2). The major component of the thio-phene ring and the benzene ring are twisted from each other by 13.92 (19)°. An intra-molecular C-H⋯O hydrogen bond generates an S(5)S(5) ring motif. The crystal structure is stabilized by inter-molecular C-H⋯O hydrogen-bonding inter-actions. In addition, a π-π stacking inter-action, with a centroid-centroid distance of 3.852 (2) Å, and short S⋯O [2.9378 (12) Å] and O⋯O [2.5811 (16) Å] contacts are observed.

Entities:  

Year:  2008        PMID: 21203219      PMCID: PMC2962137          DOI: 10.1107/S1600536808021375

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Chantrapromma et al. (2005 ▶, 2006 ▶); Fun et al. (2006 ▶); Patil, Fun et al. (2007 ▶); Patil, Dharmaprakash et al.(2007 ▶). For bond-length data, see: Allen et al. (1987 ▶); Patil et al. (2006 ▶). For graph-set analysis of hydrogen bonding, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H16O4S M = 304.35 Monoclinic, a = 7.5391 (1) Å b = 7.9225 (1) Å c = 24.3399 (3) Å β = 97.021 (1)° V = 1442.88 (3) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 100.0 (1) K 0.25 × 0.22 × 0.14 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.942, T max = 0.967 33027 measured reflections 4256 independent reflections 3174 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.120 S = 1.07 4256 reflections 211 parameters 120 restraints H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808021375/lh2658sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808021375/lh2658Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16O4SF000 = 640
Mr = 304.35Dx = 1.401 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4291 reflections
a = 7.53910 (10) Åθ = 2.7–28.4º
b = 7.92250 (10) ŵ = 0.24 mm1
c = 24.3399 (3) ÅT = 100.0 (1) K
β = 97.0210 (10)ºBlock, yellow
V = 1442.88 (3) Å30.25 × 0.22 × 0.14 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer4256 independent reflections
Radiation source: fine-focus sealed tube3174 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.063
T = 100.0(1) Kθmax = 30.1º
φ and ω scansθmin = 1.7º
Absorption correction: multi-scan(SADABS; Bruker, 2005)h = −10→10
Tmin = 0.942, Tmax = 0.967k = −11→10
33027 measured reflectionsl = −34→34
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.120  w = 1/[σ2(Fo2) + (0.0532P)2 + 0.4695P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
4256 reflectionsΔρmax = 0.41 e Å3
211 parametersΔρmin = −0.22 e Å3
120 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Experimental. The data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.21432 (18)−0.07151 (14)0.09237 (4)0.0317 (3)
O20.17726 (15)0.05965 (14)−0.21790 (4)0.0241 (2)
O30.32216 (15)−0.21704 (14)−0.24632 (4)0.0245 (2)
O40.38751 (16)−0.41134 (14)−0.05568 (4)0.0256 (3)
C40.1783 (2)0.22121 (18)0.08330 (6)0.0207 (3)
S10.17822 (8)0.24407 (6)0.153399 (18)0.02221 (15)0.870 (2)
C10.1475 (5)0.4570 (4)0.14728 (11)0.0232 (6)0.870 (2)
H1A0.14130.52860.17730.028*0.870 (2)
C20.1330 (9)0.5112 (4)0.09346 (15)0.0270 (8)0.870 (2)
H2A0.11190.62230.08220.032*0.870 (2)
C30.1544 (10)0.3750 (7)0.05759 (18)0.0335 (12)0.870 (2)
H3A0.15260.38830.01960.040*0.870 (2)
S1X0.1377 (15)0.3871 (9)0.0437 (3)0.0239 (13)0.130 (2)
C1X0.145 (7)0.511 (3)0.1014 (8)0.036 (8)*0.130 (2)
H1XA0.14810.62810.10030.043*0.130 (2)
C2X0.147 (4)0.421 (2)0.1494 (9)0.027 (6)*0.130 (2)
H2XA0.12960.46350.18390.032*0.130 (2)
C3X0.180 (3)0.253 (2)0.1369 (6)0.0335 (12)0.130 (2)
H3XA0.20080.16990.16400.040*0.130 (2)
C50.2048 (2)0.05105 (19)0.06134 (6)0.0227 (3)
C60.2186 (2)0.03664 (19)0.00174 (6)0.0237 (3)
H6A0.19750.1315−0.02060.028*
C70.2608 (2)−0.10914 (19)−0.02109 (6)0.0224 (3)
H7A0.2816−0.20090.00270.027*
C80.2776 (2)−0.13959 (18)−0.07931 (6)0.0203 (3)
C90.3410 (2)−0.29444 (19)−0.09632 (6)0.0205 (3)
C100.3580 (2)−0.32485 (19)−0.15198 (6)0.0210 (3)
H10A0.4022−0.4277−0.16270.025*
C110.3088 (2)−0.20143 (19)−0.19118 (6)0.0200 (3)
C120.2371 (2)−0.04789 (19)−0.17534 (6)0.0204 (3)
C130.2256 (2)−0.01779 (19)−0.12019 (6)0.0211 (3)
H13A0.18230.0857−0.10970.025*
C140.0920 (2)0.2100 (2)−0.20310 (6)0.0280 (4)
H14A0.05590.2753−0.23580.042*
H14B0.17360.2746−0.17800.042*
H14C−0.01130.1815−0.18550.042*
C150.3832 (2)−0.3757 (2)−0.26506 (7)0.0305 (4)
H15A0.3869−0.3710−0.30430.046*
H15B0.3028−0.4635−0.25680.046*
H15C0.5007−0.3988−0.24670.046*
C160.4083 (2)−0.5814 (2)−0.07198 (7)0.0278 (3)
H16B0.4405−0.6498−0.03970.042*
H16C0.5006−0.5879−0.09580.042*
H16D0.2979−0.6215−0.09140.042*
U11U22U33U12U13U23
O10.0575 (8)0.0197 (6)0.0187 (5)0.0009 (5)0.0076 (5)0.0019 (4)
O20.0354 (6)0.0222 (5)0.0150 (5)0.0045 (5)0.0046 (4)0.0008 (4)
O30.0346 (6)0.0249 (6)0.0151 (5)0.0023 (5)0.0077 (4)−0.0036 (4)
O40.0389 (6)0.0205 (5)0.0167 (5)0.0049 (5)0.0009 (4)−0.0005 (4)
C40.0270 (7)0.0213 (7)0.0144 (6)−0.0020 (6)0.0050 (5)−0.0017 (5)
S10.0312 (3)0.0219 (2)0.0139 (2)−0.00063 (17)0.0044 (2)−0.00192 (18)
C10.0330 (13)0.0168 (12)0.0206 (11)0.0017 (12)0.0061 (7)−0.0042 (9)
C20.0443 (19)0.0168 (11)0.0206 (11)−0.0016 (8)0.0072 (15)−0.0015 (7)
C30.0466 (19)0.0352 (17)0.020 (2)−0.0016 (12)0.0106 (17)−0.0004 (13)
S1X0.041 (3)0.0111 (18)0.022 (3)−0.0021 (16)0.014 (2)−0.0060 (17)
C3X0.0466 (19)0.0352 (17)0.020 (2)−0.0016 (12)0.0106 (17)−0.0004 (13)
C50.0312 (8)0.0208 (7)0.0167 (7)−0.0011 (6)0.0048 (6)−0.0011 (5)
C60.0353 (8)0.0201 (7)0.0164 (7)−0.0018 (6)0.0058 (6)0.0006 (5)
C70.0277 (8)0.0234 (7)0.0163 (6)−0.0010 (6)0.0025 (6)−0.0002 (5)
C80.0269 (7)0.0190 (7)0.0153 (6)−0.0026 (6)0.0042 (5)−0.0023 (5)
C90.0242 (7)0.0203 (7)0.0166 (7)−0.0006 (6)0.0005 (5)−0.0002 (5)
C100.0256 (7)0.0207 (7)0.0172 (7)0.0005 (6)0.0042 (5)−0.0033 (5)
C110.0228 (7)0.0234 (7)0.0140 (6)−0.0023 (6)0.0037 (5)−0.0021 (5)
C120.0246 (7)0.0207 (7)0.0163 (6)−0.0017 (6)0.0039 (5)0.0006 (5)
C130.0286 (8)0.0184 (7)0.0169 (7)−0.0009 (6)0.0047 (6)−0.0022 (5)
C140.0395 (9)0.0243 (8)0.0201 (7)0.0073 (7)0.0030 (6)0.0005 (6)
C150.0429 (10)0.0298 (9)0.0196 (7)0.0075 (7)0.0064 (7)−0.0071 (6)
C160.0396 (9)0.0207 (7)0.0221 (7)0.0019 (7)−0.0002 (6)−0.0007 (6)
O1—C51.2268 (18)C3X—H3XA0.9300
O2—C121.3741 (17)C5—C61.472 (2)
O2—C141.4206 (19)C6—C71.337 (2)
O3—C111.3637 (17)C6—H6A0.9300
O3—C151.4319 (19)C7—C81.4582 (19)
O4—C91.3692 (17)C7—H7A0.9300
O4—C161.4182 (18)C8—C91.398 (2)
C4—C3X1.328 (13)C8—C131.407 (2)
C4—C31.371 (5)C9—C101.3972 (19)
C4—C51.473 (2)C10—C111.385 (2)
C4—S1X1.636 (7)C10—H10A0.9300
C4—S11.7158 (15)C11—C121.404 (2)
S1—C11.707 (3)C12—C131.376 (2)
C1—C21.370 (4)C13—H13A0.9300
C1—H1A0.9300C14—H14A0.9600
C2—C31.410 (6)C14—H14B0.9600
C2—H2A0.9300C14—H14C0.9600
C3—H3A0.9300C15—H15A0.9600
S1X—C1X1.708 (18)C15—H15B0.9600
C1X—C2X1.368 (17)C15—H15C0.9600
C1X—H1XA0.9300C16—H16B0.9600
C2X—C3X1.391 (17)C16—H16C0.9600
C2X—H2XA0.9300C16—H16D0.9600
C12—O2—C14116.47 (11)C6—C7—H7A116.6
C11—O3—C15117.29 (12)C8—C7—H7A116.6
C9—O4—C16117.89 (11)C9—C8—C13117.93 (13)
C3X—C4—C3105.4 (8)C9—C8—C7120.43 (13)
C3X—C4—C5123.0 (8)C13—C8—C7121.61 (13)
C3—C4—C5131.6 (2)O4—C9—C10122.55 (13)
C3X—C4—S1X113.9 (8)O4—C9—C8116.52 (12)
C5—C4—S1X123.0 (3)C10—C9—C8120.92 (13)
C3—C4—S1110.1 (2)C11—C10—C9119.84 (14)
C5—C4—S1118.30 (11)C11—C10—H10A120.1
S1X—C4—S1118.6 (3)C9—C10—H10A120.1
C1—S1—C491.96 (10)O3—C11—C10124.62 (13)
C2—C1—S1112.8 (2)O3—C11—C12115.23 (13)
C2—C1—H1A123.6C10—C11—C12120.15 (13)
S1—C1—H1A123.6O2—C12—C13125.01 (13)
C1—C2—C3110.5 (3)O2—C12—C11115.59 (12)
C1—C2—H2A124.7C13—C12—C11119.36 (13)
C3—C2—H2A124.7C12—C13—C8121.70 (14)
C4—C3—C2114.6 (3)C12—C13—H13A119.2
C4—C3—H3A122.7C8—C13—H13A119.2
C2—C3—H3A122.7O2—C14—H14A109.5
C4—S1X—C1X89.5 (9)O2—C14—H14B109.5
C2X—C1X—S1X113.4 (16)H14A—C14—H14B109.5
C2X—C1X—H1XA123.3O2—C14—H14C109.5
S1X—C1X—H1XA123.3H14A—C14—H14C109.5
C1X—C2X—C3X107.3 (17)H14B—C14—H14C109.5
C1X—C2X—H2XA126.4O3—C15—H15A109.5
C3X—C2X—H2XA126.4O3—C15—H15B109.5
C4—C3X—C2X114.5 (14)H15A—C15—H15B109.5
C4—C3X—H3XA122.8O3—C15—H15C109.5
C2X—C3X—H3XA122.8H15A—C15—H15C109.5
O1—C5—C6122.66 (14)H15B—C15—H15C109.5
O1—C5—C4120.09 (13)O4—C16—H16B109.5
C6—C5—C4117.25 (13)O4—C16—H16C109.5
C7—C6—C5121.74 (14)H16B—C16—H16C109.5
C7—C6—H6A119.1O4—C16—H16D109.5
C5—C6—H6A119.1H16B—C16—H16D109.5
C6—C7—C8126.89 (14)H16C—C16—H16D109.5
C3X—C4—S1—C113 (12)S1—C4—C5—C6−175.26 (11)
C3—C4—S1—C1−0.2 (4)O1—C5—C6—C7−7.0 (3)
C5—C4—S1—C1178.97 (18)C4—C5—C6—C7173.08 (15)
S1X—C4—S1—C1−4.5 (5)C5—C6—C7—C8179.63 (14)
C4—S1—C1—C21.5 (4)C6—C7—C8—C9173.21 (16)
S1—C1—C2—C3−2.2 (7)C6—C7—C8—C13−8.9 (3)
C3X—C4—C3—C2−2.2 (11)C16—O4—C9—C10−16.9 (2)
C5—C4—C3—C2179.9 (4)C16—O4—C9—C8164.24 (14)
S1X—C4—C3—C2155 (5)C13—C8—C9—O4−178.88 (13)
S1—C4—C3—C2−1.0 (7)C7—C8—C9—O4−0.9 (2)
C1—C2—C3—C42.1 (8)C13—C8—C9—C102.2 (2)
C3X—C4—S1X—C1X6(2)C7—C8—C9—C10−179.86 (14)
C3—C4—S1X—C1X−18 (4)O4—C9—C10—C11−179.94 (14)
C5—C4—S1X—C1X−175.8 (18)C8—C9—C10—C11−1.1 (2)
S1—C4—S1X—C1X7.8 (19)C15—O3—C11—C103.3 (2)
C4—S1X—C1X—C2X−11 (4)C15—O3—C11—C12−175.89 (14)
S1X—C1X—C2X—C3X12 (5)C9—C10—C11—O3179.05 (13)
C3—C4—C3X—C2X4(2)C9—C10—C11—C12−1.8 (2)
C5—C4—C3X—C2X−178.2 (17)C14—O2—C12—C13−2.3 (2)
S1X—C4—C3X—C2X0(3)C14—O2—C12—C11175.38 (14)
S1—C4—C3X—C2X−163 (13)O3—C11—C12—O24.99 (19)
C1X—C2X—C3X—C4−8(4)C10—C11—C12—O2−174.20 (13)
C3X—C4—C5—O16.3 (12)O3—C11—C12—C13−177.23 (13)
C3—C4—C5—O1−176.2 (4)C10—C11—C12—C133.6 (2)
S1X—C4—C5—O1−171.6 (5)O2—C12—C13—C8175.11 (14)
S1—C4—C5—O14.8 (2)C11—C12—C13—C8−2.4 (2)
C3X—C4—C5—C6−173.8 (12)C9—C8—C13—C12−0.4 (2)
C3—C4—C5—C63.7 (5)C7—C8—C13—C12−178.33 (14)
S1X—C4—C5—C68.3 (5)
D—H···AD—HH···AD···AD—H···A
C2—H2A···O1i0.932.553.363 (4)146
C7—H7A···O10.932.522.8416 (18)101
C7—H7A···O40.932.392.7477 (19)103
C16—H16B···O4ii0.962.563.2952 (19)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯O1i0.932.553.363 (4)146
C7—H7A⋯O10.932.522.8416 (18)101
C7—H7A⋯O40.932.392.7477 (19)103
C16—H16B⋯O4ii0.962.563.2952 (19)133

Symmetry codes: (i) ; (ii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  2 in total

1.  (E)-3-(2,4-Dichloro-phen-yl)-1-(2-thien-yl)prop-2-en-1-one.

Authors:  Hoong-Kun Fun; P S Patil; S M Dharmaprakash; Suchada Chantrapromma; Ibrahim Abdul Razak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-23

2.  3-(2-Chloro-6-fluoro-phen-yl)-1-(2-thien-yl)prop-2-en-1-one.

Authors:  Hoong-Kun Fun; Suchada Chantrapromma; P S Patil; S M Dharmaprakash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-09
  2 in total

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