Literature DB >> 21201791

(E)-3-(2,4-Dichloro-phen-yl)-1-(2-thien-yl)prop-2-en-1-one.

Hoong-Kun Fun, P S Patil, S M Dharmaprakash, Suchada Chantrapromma, Ibrahim Abdul Razak.   

Abstract

In the title chalcone derivative, C(13)H(8)Cl(2)OS, the prop-2-en-1-one unit and the thio-phene and 2,4-dichloro-phenyl rings are each essentially planar. The inter-planar angle between the thio-phene and 2,4-dichloro-phenyl rings is 19.87 (6)°. Weak intra-molecular C-H⋯O and C-H⋯Cl inter-actions involving the prop-2-en-1-one unit generate an S(5)S(5) ring motif. In the crystal structure, mol-ecules are linked into head-to-tail zigzag chains along the a axis and adjacent chains are cross-linked. These cross-linked chains are arranged into sheets parallel to the ab plane. The crystal structure is stabilized by weak C-H⋯O, C-H⋯Cl and C-H⋯π inter-actions. A π-π inter-action was also observed with a centroid-centroid distance of 3.6845 (6) Å.

Entities:  

Year:  2008        PMID: 21201791      PMCID: PMC2960483          DOI: 10.1107/S1600536808026524

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For related structures, see, for example: Fun et al. (2008a ▶,b ▶). For background on the applications of substituted chalcones, see, for example: Agrinskaya et al. (1999 ▶); Chopra et al. (2007 ▶); Goto et al. (1991 ▶); Gu et al. (2008a ▶,b ▶,c ▶); Patil et al. (2007a ▶,b ▶,c ▶); Sarojini et al. (2006 ▶); Wang et al. (2004 ▶).

Experimental

Crystal data

C13H8Cl2OS M = 283.16 Monoclinic, a = 9.5701 (4) Å b = 13.9544 (6) Å c = 10.4748 (4) Å β = 118.735 (3)° V = 1226.59 (9) Å3 Z = 4 Mo Kα radiation μ = 0.68 mm−1 T = 100.0 (1) K 0.58 × 0.24 × 0.13 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.695, T max = 0.919 41878 measured reflections 4435 independent reflections 3831 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.082 S = 1.06 4435 reflections 162 parameters H-atom parameters constrained Δρmax = 0.60 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808026524/ww2127sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026524/ww2127Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H8Cl2OSF000 = 576
Mr = 283.16Dx = 1.533 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4435 reflections
a = 9.5701 (4) Åθ = 2.4–32.5º
b = 13.9544 (6) ŵ = 0.68 mm1
c = 10.4748 (4) ÅT = 100.0 (1) K
β = 118.735 (3)ºNeedle, colorless
V = 1226.59 (9) Å30.58 × 0.24 × 0.13 mm
Z = 4
Bruker SMART APEX2 CCD area-detector diffractometer4435 independent reflections
Radiation source: fine-focus sealed tube3831 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.031
Detector resolution: 8.33 pixels mm-1θmax = 32.5º
T = 100.0(1) Kθmin = 2.4º
ω scansh = −14→14
Absorption correction: multi-scan(SADABS; Bruker, 2005)k = −21→21
Tmin = 0.695, Tmax = 0.919l = −15→15
41878 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H-atom parameters constrained
wR(F2) = 0.082  w = 1/[σ2(Fo2) + (0.0403P)2 + 0.4876P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
4435 reflectionsΔρmax = 0.60 e Å3
162 parametersΔρmin = −0.28 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.05796 (3)0.558919 (18)0.18442 (3)0.01990 (7)
Cl2−0.34903 (3)0.43921 (2)0.48214 (3)0.02181 (7)
S10.55248 (3)0.18039 (2)0.20853 (3)0.02097 (7)
O10.30678 (11)0.32994 (6)0.13125 (9)0.02122 (16)
C10.64865 (14)0.08866 (9)0.32542 (13)0.0239 (2)
H1A0.72450.05040.31620.042 (5)*
C20.60409 (14)0.07946 (9)0.43128 (13)0.0222 (2)
H2A0.64480.03310.50390.030 (4)*
C30.48923 (13)0.14851 (8)0.41751 (12)0.01776 (19)
H3A0.44620.15310.48020.025 (4)*
C40.44866 (12)0.20851 (7)0.29930 (11)0.01483 (17)
C50.32870 (12)0.28469 (7)0.24030 (11)0.01551 (18)
C60.23178 (13)0.30140 (8)0.31373 (11)0.01662 (18)
H6A0.25320.26700.39720.033 (4)*
C70.11366 (13)0.36566 (7)0.26054 (12)0.01658 (18)
H7A0.09950.40120.18000.022 (4)*
C80.00490 (12)0.38454 (7)0.31897 (11)0.01508 (17)
C9−0.01998 (13)0.31711 (8)0.40561 (12)0.01814 (19)
H9A0.03730.26010.42920.032 (4)*
C10−0.12712 (13)0.33288 (8)0.45700 (12)0.01822 (19)
H10A−0.14180.28720.51410.030 (4)*
C11−0.21239 (12)0.41837 (8)0.42150 (12)0.01651 (18)
C12−0.19070 (12)0.48797 (7)0.33822 (11)0.01626 (18)
H12A−0.24720.54530.31640.023 (4)*
C13−0.08277 (12)0.47006 (7)0.28828 (11)0.01535 (18)
U11U22U33U12U13U23
Cl10.02152 (13)0.01786 (12)0.02316 (13)0.00278 (8)0.01301 (10)0.00674 (9)
Cl20.02120 (13)0.02533 (13)0.02547 (14)0.00247 (9)0.01647 (11)0.00112 (10)
S10.02269 (14)0.02431 (14)0.02117 (13)0.00481 (10)0.01474 (11)0.00138 (10)
O10.0269 (4)0.0218 (4)0.0201 (4)0.0047 (3)0.0155 (3)0.0046 (3)
C10.0216 (5)0.0255 (5)0.0248 (5)0.0084 (4)0.0113 (4)0.0015 (4)
C20.0221 (5)0.0233 (5)0.0201 (5)0.0049 (4)0.0092 (4)0.0019 (4)
C30.0195 (5)0.0187 (4)0.0167 (4)0.0009 (4)0.0100 (4)−0.0006 (4)
C40.0159 (4)0.0156 (4)0.0155 (4)0.0001 (3)0.0096 (4)−0.0013 (3)
C50.0176 (4)0.0152 (4)0.0154 (4)−0.0004 (3)0.0093 (4)−0.0019 (3)
C60.0191 (5)0.0178 (4)0.0159 (4)0.0006 (4)0.0107 (4)−0.0001 (3)
C70.0191 (4)0.0160 (4)0.0178 (4)0.0001 (3)0.0114 (4)−0.0007 (3)
C80.0162 (4)0.0147 (4)0.0154 (4)0.0005 (3)0.0084 (4)−0.0001 (3)
C90.0211 (5)0.0148 (4)0.0216 (5)0.0023 (3)0.0127 (4)0.0018 (4)
C100.0215 (5)0.0162 (4)0.0208 (5)0.0005 (4)0.0133 (4)0.0016 (4)
C110.0160 (4)0.0187 (4)0.0170 (4)0.0000 (3)0.0097 (4)−0.0015 (3)
C120.0155 (4)0.0162 (4)0.0173 (4)0.0018 (3)0.0081 (4)0.0006 (3)
C130.0158 (4)0.0148 (4)0.0154 (4)−0.0003 (3)0.0075 (3)0.0016 (3)
Cl1—C131.7396 (10)C6—C71.3367 (15)
Cl2—C111.7310 (11)C6—H6A0.9300
S1—C11.7033 (12)C7—C81.4629 (14)
S1—C41.7186 (10)C7—H7A0.9300
O1—C51.2317 (13)C8—C131.4042 (14)
C1—C21.3720 (17)C8—C91.4048 (15)
C1—H1A0.9425C9—C101.3858 (16)
C2—C31.4160 (16)C9—H9A0.9300
C2—H2A0.9300C10—C111.3912 (15)
C3—C41.3865 (15)C10—H10A0.9301
C3—H3A0.9302C11—C121.3862 (15)
C4—C51.4656 (14)C12—C131.3866 (15)
C5—C61.4806 (14)C12—H12A0.9299
C1—S1—C491.72 (6)C6—C7—H7A117.4
C2—C1—S1112.39 (9)C8—C7—H7A117.4
C2—C1—H1A125.7C13—C8—C9116.67 (9)
S1—C1—H1A121.9C13—C8—C7121.62 (9)
C1—C2—C3112.43 (11)C9—C8—C7121.69 (9)
C1—C2—H2A123.8C10—C9—C8122.10 (10)
C3—C2—H2A123.8C10—C9—H9A119.0
C4—C3—C2111.85 (10)C8—C9—H9A118.9
C4—C3—H3A124.1C9—C10—C11118.74 (10)
C2—C3—H3A124.1C9—C10—H10A120.6
C3—C4—C5129.85 (9)C11—C10—H10A120.6
C3—C4—S1111.60 (8)C12—C11—C10121.53 (10)
C5—C4—S1118.44 (8)C12—C11—Cl2118.77 (8)
O1—C5—C4120.84 (9)C10—C11—Cl2119.70 (8)
O1—C5—C6122.07 (10)C11—C12—C13118.37 (10)
C4—C5—C6117.04 (9)C11—C12—H12A120.8
C7—C6—C5120.30 (10)C13—C12—H12A120.8
C7—C6—H6A119.9C12—C13—C8122.57 (9)
C5—C6—H6A119.8C12—C13—Cl1117.25 (8)
C6—C7—C8125.15 (10)C8—C13—Cl1120.18 (8)
C4—S1—C1—C2−0.23 (10)C6—C7—C8—C9−21.13 (17)
S1—C1—C2—C3−0.06 (14)C13—C8—C9—C100.92 (16)
C1—C2—C3—C40.42 (15)C7—C8—C9—C10−177.58 (10)
C2—C3—C4—C5175.55 (11)C8—C9—C10—C11−0.07 (17)
C2—C3—C4—S1−0.59 (12)C9—C10—C11—C12−0.93 (17)
C1—S1—C4—C30.47 (9)C9—C10—C11—Cl2179.10 (9)
C1—S1—C4—C5−176.16 (9)C10—C11—C12—C130.99 (16)
C3—C4—C5—O1−178.54 (11)Cl2—C11—C12—C13−179.04 (8)
S1—C4—C5—O1−2.62 (14)C11—C12—C13—C8−0.07 (16)
C3—C4—C5—C6−1.06 (16)C11—C12—C13—Cl1−179.86 (8)
S1—C4—C5—C6174.85 (7)C9—C8—C13—C12−0.86 (15)
O1—C5—C6—C71.53 (16)C7—C8—C13—C12177.65 (10)
C4—C5—C6—C7−175.91 (10)C9—C8—C13—Cl1178.93 (8)
C5—C6—C7—C8176.55 (10)C7—C8—C13—Cl1−2.57 (14)
C6—C7—C8—C13160.45 (11)
D—H···AD—HH···AD···AD—H···A
C3—H3A···O1i0.932.523.4512 (17)175
C7—H7A···Cl10.932.683.0573 (11)105
C7—H7A···O10.932.482.8116 (17)101
C10—H10A···Cg1ii0.933.333.8233 (13)115
C12—H12A···Cg1iii0.932.873.6907 (13)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯O1i0.932.523.4512 (17)175
C7—H7A⋯Cl10.932.683.0573 (11)105
C7—H7A⋯O10.932.482.8116 (17)101
C10—H10ACg1ii0.933.333.8233 (13)115
C12—H12ACg1iii0.932.873.6907 (13)148

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the S1/C1–C4 ring.

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