| Literature DB >> 21203166 |
Abstract
The title organic compound, C(19)H(27)N(3)O(2)·H(2)O, was synthesized from methyl-ene dicyclo-hexyl-amine, 4-pyridine-carboxylic acid and N,N'-dicyclo-hexyl-carbodiimide. The water molecule is involved in inter-molecular hydrogen bonds, linking symmetry-related urea mol-ecules into a two-dimensional supra-molecular ladder-like structure.Entities:
Year: 2008 PMID: 21203166 PMCID: PMC2962082 DOI: 10.1107/S1600536808019430
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H27N3O2·H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3059 reflections | |
| θ = 3.1–27.5º | |
| µ = 0.08 mm−1 | |
| α = 98.55 (3)º | |
| β = 94.11 (3)º | Block, colorless |
| γ = 97.49 (3)º | 0.40 × 0.33 × 0.28 mm |
| Bruker SMART CCD APEXII diffractometer | 4284 independent reflections |
| Radiation source: fine-focus sealed tube | 2948 reflections with |
| Monochromator: graphite | |
| Detector resolution: 8.40 pixels mm-1 | θmax = 27.5º |
| θmin = 3.1º | |
| ω scans | |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 9385 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max < 0.001 | |
| 4284 reflections | Δρmax = 0.14 e Å−3 |
| 342 parameters | Δρmin = −0.19 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| O1 | 0.25983 (16) | 0.03443 (9) | 0.01466 (8) | 0.0451 (3) | |
| O2 | 0.57498 (15) | 0.02624 (10) | 0.32408 (8) | 0.0437 (3) | |
| O3 | 0.11137 (18) | −0.00473 (13) | −0.19210 (11) | 0.0546 (3) | |
| N1 | 0.2456 (3) | −0.40235 (13) | 0.05844 (13) | 0.0635 (4) | |
| N2 | 0.23694 (19) | −0.04403 (11) | 0.29989 (9) | 0.0357 (3) | |
| N3 | 0.38649 (17) | 0.06272 (10) | 0.18085 (8) | 0.0325 (3) | |
| C1 | 0.6570 (4) | 0.39594 (16) | 0.21113 (19) | 0.0636 (5) | |
| C2 | 0.3121 (3) | 0.39686 (17) | 0.2711 (2) | 0.0667 (6) | |
| C3 | 0.0813 (4) | −0.32783 (19) | 0.47794 (19) | 0.0731 (6) | |
| C4 | −0.0296 (4) | −0.2166 (2) | 0.48890 (18) | 0.0690 (6) | |
| C5 | 0.0909 (3) | −0.34257 (17) | 0.03668 (17) | 0.0650 (5) | |
| C6 | 0.5319 (3) | 0.45402 (16) | 0.29056 (16) | 0.0602 (5) | |
| C7 | 0.2898 (3) | 0.25718 (15) | 0.26796 (16) | 0.0536 (5) | |
| C8 | 0.6370 (3) | 0.25617 (14) | 0.20801 (17) | 0.0513 (4) | |
| C9 | 0.3026 (3) | −0.29165 (18) | 0.46441 (15) | 0.0593 (5) | |
| C10 | 0.4223 (3) | −0.33354 (15) | 0.09157 (14) | 0.0524 (4) | |
| C11 | 0.1057 (3) | −0.21635 (15) | 0.04690 (14) | 0.0498 (4) | |
| C12 | −0.0014 (3) | −0.1451 (2) | 0.40009 (15) | 0.0539 (4) | |
| C13 | 0.3287 (3) | −0.22376 (17) | 0.37377 (14) | 0.0505 (4) | |
| C14 | 0.4515 (3) | −0.20672 (14) | 0.10728 (12) | 0.0414 (4) | |
| C15 | 0.2219 (2) | −0.11014 (14) | 0.38727 (11) | 0.0371 (3) | |
| C16 | 0.4161 (2) | 0.19968 (12) | 0.18824 (12) | 0.0376 (3) | |
| C17 | 0.4089 (2) | 0.01254 (12) | 0.27488 (10) | 0.0326 (3) | |
| C18 | 0.2898 (2) | −0.14614 (12) | 0.08435 (10) | 0.0351 (3) | |
| C19 | 0.3093 (2) | −0.00917 (12) | 0.09085 (10) | 0.0324 (3) | |
| H1 | 0.289 (2) | −0.0558 (14) | 0.4476 (12) | 0.039 (4)* | |
| H2 | 0.365 (2) | 0.2150 (14) | 0.1216 (13) | 0.045 (4)* | |
| H3 | 0.579 (3) | −0.1618 (15) | 0.1334 (12) | 0.047 (4)* | |
| H4 | −0.010 (3) | −0.1756 (17) | 0.0266 (14) | 0.064 (5)* | |
| H5 | 0.260 (3) | −0.2770 (17) | 0.3092 (15) | 0.063 (5)* | |
| H6 | 0.153 (4) | −0.014 (2) | −0.128 (2) | 0.093 (8)* | |
| H7 | −0.061 (3) | −0.1957 (18) | 0.3374 (16) | 0.064 (6)* | |
| H8 | 0.341 (3) | 0.2358 (16) | 0.3374 (15) | 0.060 (5)* | |
| H9 | 0.542 (3) | 0.5415 (19) | 0.2889 (15) | 0.074 (6)* | |
| H10 | 0.118 (3) | −0.0381 (17) | 0.2633 (15) | 0.063 (5)* | |
| H11 | 0.686 (3) | 0.2370 (19) | 0.2787 (17) | 0.078 (6)* | |
| H12 | 0.212 (4) | −0.019 (2) | −0.2310 (18) | 0.084 (7)* | |
| H13 | 0.538 (3) | −0.3773 (17) | 0.1074 (14) | 0.063 (5)* | |
| H14 | 0.599 (3) | 0.4149 (19) | 0.1418 (19) | 0.084 (7)* | |
| H15 | 0.373 (3) | −0.2369 (19) | 0.5286 (17) | 0.075 (6)* | |
| H16 | 0.706 (3) | 0.2202 (18) | 0.1530 (16) | 0.072 (6)* | |
| H17 | 0.473 (3) | −0.1978 (17) | 0.3659 (14) | 0.065 (6)* | |
| H18 | 0.587 (3) | 0.4396 (17) | 0.3617 (16) | 0.067 (6)* | |
| H19 | 0.015 (3) | −0.387 (2) | 0.4148 (18) | 0.086 (7)* | |
| H20 | −0.041 (3) | −0.3951 (19) | 0.0133 (16) | 0.078 (6)* | |
| H21 | 0.258 (3) | 0.4170 (19) | 0.2025 (18) | 0.079 (7)* | |
| H22 | 0.150 (3) | 0.2190 (17) | 0.2552 (14) | 0.066 (6)* | |
| H23 | 0.067 (3) | −0.369 (2) | 0.5385 (18) | 0.087 (7)* | |
| H24 | 0.018 (4) | −0.160 (2) | 0.554 (2) | 0.094 (8)* | |
| H25 | 0.379 (3) | −0.3669 (19) | 0.4574 (15) | 0.072 (6)* | |
| H26 | 0.235 (3) | 0.431 (2) | 0.3277 (19) | 0.093 (7)* | |
| H27 | −0.064 (3) | −0.0673 (19) | 0.4108 (15) | 0.071 (6)* | |
| H28 | −0.174 (4) | −0.239 (2) | 0.4927 (19) | 0.099 (8)* | |
| H29 | 0.800 (4) | 0.430 (2) | 0.2219 (18) | 0.091 (7)* |
| O1 | 0.0575 (7) | 0.0422 (6) | 0.0340 (6) | 0.0022 (5) | −0.0074 (5) | 0.0113 (5) |
| O2 | 0.0385 (6) | 0.0526 (6) | 0.0395 (6) | 0.0011 (5) | −0.0045 (5) | 0.0143 (5) |
| O3 | 0.0408 (6) | 0.0825 (9) | 0.0413 (7) | 0.0172 (6) | −0.0019 (5) | 0.0078 (6) |
| N1 | 0.0736 (11) | 0.0339 (7) | 0.0786 (11) | −0.0003 (8) | 0.0038 (9) | 0.0040 (7) |
| N2 | 0.0354 (7) | 0.0420 (7) | 0.0322 (6) | 0.0058 (5) | 0.0029 (5) | 0.0134 (5) |
| N3 | 0.0406 (7) | 0.0281 (6) | 0.0287 (6) | 0.0027 (5) | 0.0015 (5) | 0.0066 (4) |
| C1 | 0.0734 (14) | 0.0375 (9) | 0.0786 (15) | −0.0047 (9) | 0.0201 (11) | 0.0097 (9) |
| C2 | 0.0732 (14) | 0.0413 (10) | 0.0859 (16) | 0.0170 (10) | 0.0152 (12) | −0.0004 (10) |
| C3 | 0.1100 (19) | 0.0512 (11) | 0.0591 (13) | −0.0050 (12) | 0.0115 (12) | 0.0254 (10) |
| C4 | 0.0696 (14) | 0.0793 (15) | 0.0660 (14) | 0.0037 (12) | 0.0264 (11) | 0.0335 (12) |
| C5 | 0.0594 (12) | 0.0423 (10) | 0.0837 (14) | −0.0081 (9) | −0.0013 (10) | −0.0042 (9) |
| C6 | 0.0873 (15) | 0.0319 (9) | 0.0589 (12) | 0.0045 (9) | 0.0076 (10) | 0.0019 (8) |
| C7 | 0.0506 (11) | 0.0397 (9) | 0.0706 (13) | 0.0082 (8) | 0.0159 (9) | 0.0022 (8) |
| C8 | 0.0533 (10) | 0.0342 (8) | 0.0661 (12) | −0.0008 (7) | 0.0210 (9) | 0.0059 (8) |
| C9 | 0.0894 (15) | 0.0476 (10) | 0.0478 (11) | 0.0204 (10) | 0.0105 (10) | 0.0192 (8) |
| C10 | 0.0619 (11) | 0.0392 (9) | 0.0578 (11) | 0.0116 (9) | 0.0042 (9) | 0.0102 (8) |
| C11 | 0.0461 (9) | 0.0397 (9) | 0.0580 (11) | −0.0006 (8) | −0.0036 (8) | −0.0007 (7) |
| C12 | 0.0492 (10) | 0.0645 (12) | 0.0537 (11) | 0.0056 (9) | 0.0152 (9) | 0.0253 (9) |
| C13 | 0.0656 (12) | 0.0488 (9) | 0.0435 (10) | 0.0182 (9) | 0.0106 (9) | 0.0172 (8) |
| C14 | 0.0468 (9) | 0.0357 (8) | 0.0411 (8) | 0.0023 (7) | 0.0018 (7) | 0.0082 (6) |
| C15 | 0.0449 (8) | 0.0391 (8) | 0.0289 (7) | 0.0050 (7) | 0.0041 (6) | 0.0108 (6) |
| C16 | 0.0530 (9) | 0.0272 (7) | 0.0323 (8) | 0.0048 (6) | 0.0011 (6) | 0.0064 (6) |
| C17 | 0.0387 (8) | 0.0289 (7) | 0.0302 (7) | 0.0056 (6) | 0.0026 (6) | 0.0049 (5) |
| C18 | 0.0427 (8) | 0.0320 (7) | 0.0291 (7) | 0.0006 (6) | 0.0047 (6) | 0.0039 (5) |
| C19 | 0.0321 (7) | 0.0336 (7) | 0.0309 (7) | 0.0013 (6) | 0.0026 (6) | 0.0067 (6) |
| O1—C19 | 1.2253 (16) | C5—H20 | 0.99 (2) |
| O2—C17 | 1.2239 (17) | C6—H9 | 0.97 (2) |
| O3—H6 | 0.89 (3) | C6—H18 | 1.03 (2) |
| O3—H12 | 0.89 (2) | C7—C16 | 1.516 (2) |
| N1—C10 | 1.325 (2) | C7—H8 | 1.030 (19) |
| N1—C5 | 1.335 (3) | C7—H22 | 0.96 (2) |
| N2—C17 | 1.3222 (19) | C8—C16 | 1.513 (2) |
| N2—C15 | 1.4628 (18) | C8—H11 | 1.03 (2) |
| N2—H10 | 0.91 (2) | C8—H16 | 0.95 (2) |
| N3—C19 | 1.3587 (18) | C9—C13 | 1.518 (2) |
| N3—C17 | 1.4443 (17) | C9—H15 | 1.01 (2) |
| N3—C16 | 1.4957 (17) | C9—H25 | 1.03 (2) |
| C1—C6 | 1.511 (3) | C10—C14 | 1.379 (2) |
| C1—C8 | 1.535 (2) | C10—H13 | 0.988 (19) |
| C1—H14 | 1.03 (2) | C11—C18 | 1.382 (2) |
| C1—H29 | 0.97 (2) | C11—H4 | 0.98 (2) |
| C2—C6 | 1.508 (3) | C12—C15 | 1.518 (2) |
| C2—C7 | 1.533 (2) | C12—H7 | 0.96 (2) |
| C2—H21 | 1.02 (2) | C12—H27 | 1.00 (2) |
| C2—H26 | 0.99 (2) | C13—C15 | 1.522 (2) |
| C3—C9 | 1.509 (3) | C13—H5 | 1.008 (19) |
| C3—C4 | 1.515 (3) | C13—H17 | 0.98 (2) |
| C3—H19 | 1.02 (2) | C14—C18 | 1.382 (2) |
| C3—H23 | 0.99 (2) | C14—H3 | 0.943 (17) |
| C4—C12 | 1.523 (3) | C15—H1 | 0.969 (16) |
| C4—H24 | 0.99 (3) | C16—H2 | 0.970 (17) |
| C4—H28 | 0.97 (3) | C18—C19 | 1.4988 (19) |
| C5—C11 | 1.378 (2) | ||
| H6—O3—H12 | 107 (2) | C1—C8—H16 | 109.9 (12) |
| C10—N1—C5 | 116.45 (15) | H11—C8—H16 | 114.0 (16) |
| C17—N2—C15 | 124.07 (13) | C3—C9—C13 | 111.55 (18) |
| C17—N2—H10 | 118.8 (12) | C3—C9—H15 | 110.0 (12) |
| C15—N2—H10 | 117.0 (12) | C13—C9—H15 | 108.9 (12) |
| C19—N3—C17 | 121.70 (11) | C3—C9—H25 | 111.3 (11) |
| C19—N3—C16 | 119.75 (11) | C13—C9—H25 | 110.8 (11) |
| C17—N3—C16 | 117.70 (11) | H15—C9—H25 | 104.0 (16) |
| C6—C1—C8 | 111.14 (16) | N1—C10—C14 | 124.03 (17) |
| C6—C1—H14 | 105.6 (12) | N1—C10—H13 | 116.8 (11) |
| C8—C1—H14 | 109.7 (12) | C14—C10—H13 | 119.1 (11) |
| C6—C1—H29 | 113.1 (14) | C5—C11—C18 | 118.67 (17) |
| C8—C1—H29 | 108.9 (14) | C5—C11—H4 | 121.7 (11) |
| H14—C1—H29 | 108.3 (19) | C18—C11—H4 | 119.6 (11) |
| C6—C2—C7 | 111.16 (17) | C15—C12—C4 | 111.31 (16) |
| C6—C2—H21 | 107.2 (12) | C15—C12—H7 | 106.9 (12) |
| C7—C2—H21 | 110.3 (12) | C4—C12—H7 | 109.6 (12) |
| C6—C2—H26 | 109.6 (13) | C15—C12—H27 | 107.6 (11) |
| C7—C2—H26 | 107.3 (13) | C4—C12—H27 | 111.5 (11) |
| H21—C2—H26 | 111.3 (18) | H7—C12—H27 | 109.9 (16) |
| C9—C3—C4 | 111.04 (17) | C9—C13—C15 | 110.16 (14) |
| C9—C3—H19 | 109.2 (13) | C9—C13—H5 | 109.9 (11) |
| C4—C3—H19 | 107.8 (12) | C15—C13—H5 | 105.7 (10) |
| C9—C3—H23 | 110.5 (13) | C9—C13—H17 | 111.8 (11) |
| C4—C3—H23 | 109.8 (13) | C15—C13—H17 | 108.5 (11) |
| H19—C3—H23 | 108.4 (18) | H5—C13—H17 | 110.5 (16) |
| C3—C4—C12 | 111.67 (18) | C10—C14—C18 | 118.81 (16) |
| C3—C4—H24 | 111.1 (14) | C10—C14—H3 | 120.8 (10) |
| C12—C4—H24 | 108.5 (14) | C18—C14—H3 | 120.3 (10) |
| C3—C4—H28 | 112.3 (14) | N2—C15—C12 | 108.20 (13) |
| C12—C4—H28 | 108.1 (15) | N2—C15—C13 | 112.09 (12) |
| H24—C4—H28 | 105 (2) | C12—C15—C13 | 110.68 (15) |
| N1—C5—C11 | 123.98 (18) | N2—C15—H1 | 108.0 (9) |
| N1—C5—H20 | 115.5 (11) | C12—C15—H1 | 110.7 (9) |
| C11—C5—H20 | 120.5 (12) | C13—C15—H1 | 107.1 (9) |
| C2—C6—C1 | 110.99 (17) | N3—C16—C8 | 112.88 (13) |
| C2—C6—H9 | 109.3 (12) | N3—C16—C7 | 110.71 (13) |
| C1—C6—H9 | 109.7 (12) | C8—C16—C7 | 111.38 (14) |
| C2—C6—H18 | 108.5 (11) | N3—C16—H2 | 105.2 (9) |
| C1—C6—H18 | 108.6 (11) | C8—C16—H2 | 108.1 (9) |
| H9—C6—H18 | 109.8 (16) | C7—C16—H2 | 108.2 (9) |
| C16—C7—C2 | 110.43 (16) | O2—C17—N2 | 126.20 (13) |
| C16—C7—H8 | 107.0 (10) | O2—C17—N3 | 120.23 (13) |
| C2—C7—H8 | 111.0 (10) | N2—C17—N3 | 113.55 (12) |
| C16—C7—H22 | 110.3 (11) | C11—C18—C14 | 118.01 (14) |
| C2—C7—H22 | 112.4 (11) | C11—C18—C19 | 118.81 (14) |
| H8—C7—H22 | 105.5 (15) | C14—C18—C19 | 123.02 (13) |
| C16—C8—C1 | 110.19 (16) | O1—C19—N3 | 122.14 (13) |
| C16—C8—H11 | 105.7 (12) | O1—C19—C18 | 119.26 (12) |
| C1—C8—H11 | 109.8 (12) | N3—C19—C18 | 118.59 (12) |
| C16—C8—H16 | 107.1 (12) | ||
| C9—C3—C4—C12 | 54.2 (3) | C1—C8—C16—N3 | 178.11 (14) |
| C10—N1—C5—C11 | −0.1 (3) | C1—C8—C16—C7 | −56.6 (2) |
| C7—C2—C6—C1 | 56.2 (3) | C2—C7—C16—N3 | −177.01 (16) |
| C8—C1—C6—C2 | −56.5 (3) | C2—C7—C16—C8 | 56.5 (2) |
| C6—C2—C7—C16 | −56.0 (3) | C15—N2—C17—O2 | −6.0 (2) |
| C6—C1—C8—C16 | 56.4 (2) | C15—N2—C17—N3 | 175.33 (11) |
| C4—C3—C9—C13 | −56.0 (2) | C19—N3—C17—O2 | 123.81 (15) |
| C5—N1—C10—C14 | 2.1 (3) | C16—N3—C17—O2 | −66.79 (17) |
| N1—C5—C11—C18 | −1.7 (3) | C19—N3—C17—N2 | −57.40 (17) |
| C3—C4—C12—C15 | −54.4 (3) | C16—N3—C17—N2 | 111.99 (14) |
| C3—C9—C13—C15 | 57.5 (2) | C5—C11—C18—C14 | 1.6 (2) |
| N1—C10—C14—C18 | −2.2 (3) | C5—C11—C18—C19 | 177.11 (16) |
| C17—N2—C15—C12 | 171.48 (14) | C10—C14—C18—C11 | 0.2 (2) |
| C17—N2—C15—C13 | −66.20 (19) | C10—C14—C18—C19 | −175.11 (14) |
| C4—C12—C15—N2 | 179.01 (16) | C17—N3—C19—O1 | 168.24 (12) |
| C4—C12—C15—C13 | 55.8 (2) | C16—N3—C19—O1 | −0.9 (2) |
| C9—C13—C15—N2 | −178.00 (15) | C17—N3—C19—C18 | −13.44 (19) |
| C9—C13—C15—C12 | −57.1 (2) | C16—N3—C19—C18 | 177.38 (12) |
| C19—N3—C16—C8 | −115.27 (16) | C11—C18—C19—O1 | −52.43 (19) |
| C17—N3—C16—C8 | 75.12 (17) | C14—C18—C19—O1 | 122.84 (16) |
| C19—N3—C16—C7 | 119.10 (16) | C11—C18—C19—N3 | 129.19 (15) |
| C17—N3—C16—C7 | −50.51 (18) | C14—C18—C19—N3 | −55.53 (19) |
| H··· | ||||
| O3—H6···O1 | 0.89 (3) | 1.95 (3) | 2.7959 (18) | 158 (2) |
| N2—H10···O3i | 0.91 (2) | 1.89 (2) | 2.7949 (19) | 170 (2) |
| O3—H12···O2ii | 0.89 (2) | 1.95 (3) | 2.8319 (19) | 171 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H6⋯O1 | 0.89 (3) | 1.95 (3) | 2.7959 (18) | 158 (2) |
| N2—H10⋯O3i | 0.91 (2) | 1.89 (2) | 2.7949 (19) | 170 (2) |
| O3—H12⋯O2ii | 0.89 (2) | 1.95 (3) | 2.8319 (19) | 171 (2) |
Symmetry codes: (i) ; (ii) .