Literature DB >> 21203166

1,3-Dicyclo-hexyl-1-isonicotinoylurea monohydrate.

Cun-Kuan Wang, Feng-Yan Zhou.   

Abstract

The title organic compound, C(19)H(27)N(3)O(2)·H(2)O, was synthesized from methyl-ene dicyclo-hexyl-amine, 4-pyridine-carboxylic acid and N,N'-dicyclo-hexyl-carbodiimide. The water molecule is involved in inter-molecular hydrogen bonds, linking symmetry-related urea mol-ecules into a two-dimensional supra-molecular ladder-like structure.

Entities:  

Year:  2008        PMID: 21203166      PMCID: PMC2962082          DOI: 10.1107/S1600536808019430

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Iyer et al. (1971 ▶); Jew et al. (2003 ▶); Li et al. (2006 ▶); Mu & Qin (2003 ▶); Wachter et al. (1998 ▶).

Experimental

Crystal data

C19H27N3O2·H2O M = 347.45 Triclinic, a = 6.6694 (13) Å b = 11.106 (2) Å c = 13.248 (3) Å α = 98.55 (3)° β = 94.11 (3)° γ = 97.49 (3)° V = 958.0 (3) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 298 (2) K 0.40 × 0.33 × 0.28 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.968, T max = 0.977 9385 measured reflections 4284 independent reflections 2948 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.119 S = 1.04 4284 reflections 342 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2003 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808019430/cs2080sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808019430/cs2080Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H27N3O2·H2OZ = 2
Mr = 347.45F000 = 376
Triclinic, P1Dx = 1.205 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 6.6694 (13) ÅCell parameters from 3059 reflections
b = 11.106 (2) Åθ = 3.1–27.5º
c = 13.248 (3) ŵ = 0.08 mm1
α = 98.55 (3)ºT = 298 (2) K
β = 94.11 (3)ºBlock, colorless
γ = 97.49 (3)º0.40 × 0.33 × 0.28 mm
V = 958.0 (3) Å3
Bruker SMART CCD APEXII diffractometer4284 independent reflections
Radiation source: fine-focus sealed tube2948 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.029
Detector resolution: 8.40 pixels mm-1θmax = 27.5º
T = 298(2) Kθmin = 3.1º
ω scansh = −8→7
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)k = −14→14
Tmin = 0.968, Tmax = 0.977l = −17→17
9385 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.119  w = 1/[σ2(Fo2) + (0.054P)2 + 0.1047P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
4284 reflectionsΔρmax = 0.14 e Å3
342 parametersΔρmin = −0.19 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
xyzUiso*/Ueq
O10.25983 (16)0.03443 (9)0.01466 (8)0.0451 (3)
O20.57498 (15)0.02624 (10)0.32408 (8)0.0437 (3)
O30.11137 (18)−0.00473 (13)−0.19210 (11)0.0546 (3)
N10.2456 (3)−0.40235 (13)0.05844 (13)0.0635 (4)
N20.23694 (19)−0.04403 (11)0.29989 (9)0.0357 (3)
N30.38649 (17)0.06272 (10)0.18085 (8)0.0325 (3)
C10.6570 (4)0.39594 (16)0.21113 (19)0.0636 (5)
C20.3121 (3)0.39686 (17)0.2711 (2)0.0667 (6)
C30.0813 (4)−0.32783 (19)0.47794 (19)0.0731 (6)
C4−0.0296 (4)−0.2166 (2)0.48890 (18)0.0690 (6)
C50.0909 (3)−0.34257 (17)0.03668 (17)0.0650 (5)
C60.5319 (3)0.45402 (16)0.29056 (16)0.0602 (5)
C70.2898 (3)0.25718 (15)0.26796 (16)0.0536 (5)
C80.6370 (3)0.25617 (14)0.20801 (17)0.0513 (4)
C90.3026 (3)−0.29165 (18)0.46441 (15)0.0593 (5)
C100.4223 (3)−0.33354 (15)0.09157 (14)0.0524 (4)
C110.1057 (3)−0.21635 (15)0.04690 (14)0.0498 (4)
C12−0.0014 (3)−0.1451 (2)0.40009 (15)0.0539 (4)
C130.3287 (3)−0.22376 (17)0.37377 (14)0.0505 (4)
C140.4515 (3)−0.20672 (14)0.10728 (12)0.0414 (4)
C150.2219 (2)−0.11014 (14)0.38727 (11)0.0371 (3)
C160.4161 (2)0.19968 (12)0.18824 (12)0.0376 (3)
C170.4089 (2)0.01254 (12)0.27488 (10)0.0326 (3)
C180.2898 (2)−0.14614 (12)0.08435 (10)0.0351 (3)
C190.3093 (2)−0.00917 (12)0.09085 (10)0.0324 (3)
H10.289 (2)−0.0558 (14)0.4476 (12)0.039 (4)*
H20.365 (2)0.2150 (14)0.1216 (13)0.045 (4)*
H30.579 (3)−0.1618 (15)0.1334 (12)0.047 (4)*
H4−0.010 (3)−0.1756 (17)0.0266 (14)0.064 (5)*
H50.260 (3)−0.2770 (17)0.3092 (15)0.063 (5)*
H60.153 (4)−0.014 (2)−0.128 (2)0.093 (8)*
H7−0.061 (3)−0.1957 (18)0.3374 (16)0.064 (6)*
H80.341 (3)0.2358 (16)0.3374 (15)0.060 (5)*
H90.542 (3)0.5415 (19)0.2889 (15)0.074 (6)*
H100.118 (3)−0.0381 (17)0.2633 (15)0.063 (5)*
H110.686 (3)0.2370 (19)0.2787 (17)0.078 (6)*
H120.212 (4)−0.019 (2)−0.2310 (18)0.084 (7)*
H130.538 (3)−0.3773 (17)0.1074 (14)0.063 (5)*
H140.599 (3)0.4149 (19)0.1418 (19)0.084 (7)*
H150.373 (3)−0.2369 (19)0.5286 (17)0.075 (6)*
H160.706 (3)0.2202 (18)0.1530 (16)0.072 (6)*
H170.473 (3)−0.1978 (17)0.3659 (14)0.065 (6)*
H180.587 (3)0.4396 (17)0.3617 (16)0.067 (6)*
H190.015 (3)−0.387 (2)0.4148 (18)0.086 (7)*
H20−0.041 (3)−0.3951 (19)0.0133 (16)0.078 (6)*
H210.258 (3)0.4170 (19)0.2025 (18)0.079 (7)*
H220.150 (3)0.2190 (17)0.2552 (14)0.066 (6)*
H230.067 (3)−0.369 (2)0.5385 (18)0.087 (7)*
H240.018 (4)−0.160 (2)0.554 (2)0.094 (8)*
H250.379 (3)−0.3669 (19)0.4574 (15)0.072 (6)*
H260.235 (3)0.431 (2)0.3277 (19)0.093 (7)*
H27−0.064 (3)−0.0673 (19)0.4108 (15)0.071 (6)*
H28−0.174 (4)−0.239 (2)0.4927 (19)0.099 (8)*
H290.800 (4)0.430 (2)0.2219 (18)0.091 (7)*
U11U22U33U12U13U23
O10.0575 (7)0.0422 (6)0.0340 (6)0.0022 (5)−0.0074 (5)0.0113 (5)
O20.0385 (6)0.0526 (6)0.0395 (6)0.0011 (5)−0.0045 (5)0.0143 (5)
O30.0408 (6)0.0825 (9)0.0413 (7)0.0172 (6)−0.0019 (5)0.0078 (6)
N10.0736 (11)0.0339 (7)0.0786 (11)−0.0003 (8)0.0038 (9)0.0040 (7)
N20.0354 (7)0.0420 (7)0.0322 (6)0.0058 (5)0.0029 (5)0.0134 (5)
N30.0406 (7)0.0281 (6)0.0287 (6)0.0027 (5)0.0015 (5)0.0066 (4)
C10.0734 (14)0.0375 (9)0.0786 (15)−0.0047 (9)0.0201 (11)0.0097 (9)
C20.0732 (14)0.0413 (10)0.0859 (16)0.0170 (10)0.0152 (12)−0.0004 (10)
C30.1100 (19)0.0512 (11)0.0591 (13)−0.0050 (12)0.0115 (12)0.0254 (10)
C40.0696 (14)0.0793 (15)0.0660 (14)0.0037 (12)0.0264 (11)0.0335 (12)
C50.0594 (12)0.0423 (10)0.0837 (14)−0.0081 (9)−0.0013 (10)−0.0042 (9)
C60.0873 (15)0.0319 (9)0.0589 (12)0.0045 (9)0.0076 (10)0.0019 (8)
C70.0506 (11)0.0397 (9)0.0706 (13)0.0082 (8)0.0159 (9)0.0022 (8)
C80.0533 (10)0.0342 (8)0.0661 (12)−0.0008 (7)0.0210 (9)0.0059 (8)
C90.0894 (15)0.0476 (10)0.0478 (11)0.0204 (10)0.0105 (10)0.0192 (8)
C100.0619 (11)0.0392 (9)0.0578 (11)0.0116 (9)0.0042 (9)0.0102 (8)
C110.0461 (9)0.0397 (9)0.0580 (11)−0.0006 (8)−0.0036 (8)−0.0007 (7)
C120.0492 (10)0.0645 (12)0.0537 (11)0.0056 (9)0.0152 (9)0.0253 (9)
C130.0656 (12)0.0488 (9)0.0435 (10)0.0182 (9)0.0106 (9)0.0172 (8)
C140.0468 (9)0.0357 (8)0.0411 (8)0.0023 (7)0.0018 (7)0.0082 (6)
C150.0449 (8)0.0391 (8)0.0289 (7)0.0050 (7)0.0041 (6)0.0108 (6)
C160.0530 (9)0.0272 (7)0.0323 (8)0.0048 (6)0.0011 (6)0.0064 (6)
C170.0387 (8)0.0289 (7)0.0302 (7)0.0056 (6)0.0026 (6)0.0049 (5)
C180.0427 (8)0.0320 (7)0.0291 (7)0.0006 (6)0.0047 (6)0.0039 (5)
C190.0321 (7)0.0336 (7)0.0309 (7)0.0013 (6)0.0026 (6)0.0067 (6)
O1—C191.2253 (16)C5—H200.99 (2)
O2—C171.2239 (17)C6—H90.97 (2)
O3—H60.89 (3)C6—H181.03 (2)
O3—H120.89 (2)C7—C161.516 (2)
N1—C101.325 (2)C7—H81.030 (19)
N1—C51.335 (3)C7—H220.96 (2)
N2—C171.3222 (19)C8—C161.513 (2)
N2—C151.4628 (18)C8—H111.03 (2)
N2—H100.91 (2)C8—H160.95 (2)
N3—C191.3587 (18)C9—C131.518 (2)
N3—C171.4443 (17)C9—H151.01 (2)
N3—C161.4957 (17)C9—H251.03 (2)
C1—C61.511 (3)C10—C141.379 (2)
C1—C81.535 (2)C10—H130.988 (19)
C1—H141.03 (2)C11—C181.382 (2)
C1—H290.97 (2)C11—H40.98 (2)
C2—C61.508 (3)C12—C151.518 (2)
C2—C71.533 (2)C12—H70.96 (2)
C2—H211.02 (2)C12—H271.00 (2)
C2—H260.99 (2)C13—C151.522 (2)
C3—C91.509 (3)C13—H51.008 (19)
C3—C41.515 (3)C13—H170.98 (2)
C3—H191.02 (2)C14—C181.382 (2)
C3—H230.99 (2)C14—H30.943 (17)
C4—C121.523 (3)C15—H10.969 (16)
C4—H240.99 (3)C16—H20.970 (17)
C4—H280.97 (3)C18—C191.4988 (19)
C5—C111.378 (2)
H6—O3—H12107 (2)C1—C8—H16109.9 (12)
C10—N1—C5116.45 (15)H11—C8—H16114.0 (16)
C17—N2—C15124.07 (13)C3—C9—C13111.55 (18)
C17—N2—H10118.8 (12)C3—C9—H15110.0 (12)
C15—N2—H10117.0 (12)C13—C9—H15108.9 (12)
C19—N3—C17121.70 (11)C3—C9—H25111.3 (11)
C19—N3—C16119.75 (11)C13—C9—H25110.8 (11)
C17—N3—C16117.70 (11)H15—C9—H25104.0 (16)
C6—C1—C8111.14 (16)N1—C10—C14124.03 (17)
C6—C1—H14105.6 (12)N1—C10—H13116.8 (11)
C8—C1—H14109.7 (12)C14—C10—H13119.1 (11)
C6—C1—H29113.1 (14)C5—C11—C18118.67 (17)
C8—C1—H29108.9 (14)C5—C11—H4121.7 (11)
H14—C1—H29108.3 (19)C18—C11—H4119.6 (11)
C6—C2—C7111.16 (17)C15—C12—C4111.31 (16)
C6—C2—H21107.2 (12)C15—C12—H7106.9 (12)
C7—C2—H21110.3 (12)C4—C12—H7109.6 (12)
C6—C2—H26109.6 (13)C15—C12—H27107.6 (11)
C7—C2—H26107.3 (13)C4—C12—H27111.5 (11)
H21—C2—H26111.3 (18)H7—C12—H27109.9 (16)
C9—C3—C4111.04 (17)C9—C13—C15110.16 (14)
C9—C3—H19109.2 (13)C9—C13—H5109.9 (11)
C4—C3—H19107.8 (12)C15—C13—H5105.7 (10)
C9—C3—H23110.5 (13)C9—C13—H17111.8 (11)
C4—C3—H23109.8 (13)C15—C13—H17108.5 (11)
H19—C3—H23108.4 (18)H5—C13—H17110.5 (16)
C3—C4—C12111.67 (18)C10—C14—C18118.81 (16)
C3—C4—H24111.1 (14)C10—C14—H3120.8 (10)
C12—C4—H24108.5 (14)C18—C14—H3120.3 (10)
C3—C4—H28112.3 (14)N2—C15—C12108.20 (13)
C12—C4—H28108.1 (15)N2—C15—C13112.09 (12)
H24—C4—H28105 (2)C12—C15—C13110.68 (15)
N1—C5—C11123.98 (18)N2—C15—H1108.0 (9)
N1—C5—H20115.5 (11)C12—C15—H1110.7 (9)
C11—C5—H20120.5 (12)C13—C15—H1107.1 (9)
C2—C6—C1110.99 (17)N3—C16—C8112.88 (13)
C2—C6—H9109.3 (12)N3—C16—C7110.71 (13)
C1—C6—H9109.7 (12)C8—C16—C7111.38 (14)
C2—C6—H18108.5 (11)N3—C16—H2105.2 (9)
C1—C6—H18108.6 (11)C8—C16—H2108.1 (9)
H9—C6—H18109.8 (16)C7—C16—H2108.2 (9)
C16—C7—C2110.43 (16)O2—C17—N2126.20 (13)
C16—C7—H8107.0 (10)O2—C17—N3120.23 (13)
C2—C7—H8111.0 (10)N2—C17—N3113.55 (12)
C16—C7—H22110.3 (11)C11—C18—C14118.01 (14)
C2—C7—H22112.4 (11)C11—C18—C19118.81 (14)
H8—C7—H22105.5 (15)C14—C18—C19123.02 (13)
C16—C8—C1110.19 (16)O1—C19—N3122.14 (13)
C16—C8—H11105.7 (12)O1—C19—C18119.26 (12)
C1—C8—H11109.8 (12)N3—C19—C18118.59 (12)
C16—C8—H16107.1 (12)
C9—C3—C4—C1254.2 (3)C1—C8—C16—N3178.11 (14)
C10—N1—C5—C11−0.1 (3)C1—C8—C16—C7−56.6 (2)
C7—C2—C6—C156.2 (3)C2—C7—C16—N3−177.01 (16)
C8—C1—C6—C2−56.5 (3)C2—C7—C16—C856.5 (2)
C6—C2—C7—C16−56.0 (3)C15—N2—C17—O2−6.0 (2)
C6—C1—C8—C1656.4 (2)C15—N2—C17—N3175.33 (11)
C4—C3—C9—C13−56.0 (2)C19—N3—C17—O2123.81 (15)
C5—N1—C10—C142.1 (3)C16—N3—C17—O2−66.79 (17)
N1—C5—C11—C18−1.7 (3)C19—N3—C17—N2−57.40 (17)
C3—C4—C12—C15−54.4 (3)C16—N3—C17—N2111.99 (14)
C3—C9—C13—C1557.5 (2)C5—C11—C18—C141.6 (2)
N1—C10—C14—C18−2.2 (3)C5—C11—C18—C19177.11 (16)
C17—N2—C15—C12171.48 (14)C10—C14—C18—C110.2 (2)
C17—N2—C15—C13−66.20 (19)C10—C14—C18—C19−175.11 (14)
C4—C12—C15—N2179.01 (16)C17—N3—C19—O1168.24 (12)
C4—C12—C15—C1355.8 (2)C16—N3—C19—O1−0.9 (2)
C9—C13—C15—N2−178.00 (15)C17—N3—C19—C18−13.44 (19)
C9—C13—C15—C12−57.1 (2)C16—N3—C19—C18177.38 (12)
C19—N3—C16—C8−115.27 (16)C11—C18—C19—O1−52.43 (19)
C17—N3—C16—C875.12 (17)C14—C18—C19—O1122.84 (16)
C19—N3—C16—C7119.10 (16)C11—C18—C19—N3129.19 (15)
C17—N3—C16—C7−50.51 (18)C14—C18—C19—N3−55.53 (19)
D—H···AD—HH···AD···AD—H···A
O3—H6···O10.89 (3)1.95 (3)2.7959 (18)158 (2)
N2—H10···O3i0.91 (2)1.89 (2)2.7949 (19)170 (2)
O3—H12···O2ii0.89 (2)1.95 (3)2.8319 (19)171 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H6⋯O10.89 (3)1.95 (3)2.7959 (18)158 (2)
N2—H10⋯O3i0.91 (2)1.89 (2)2.7949 (19)170 (2)
O3—H12⋯O2ii0.89 (2)1.95 (3)2.8319 (19)171 (2)

Symmetry codes: (i) ; (ii) .

  4 in total

1.  Synthesis and herbicidal activity of novel 3-aminocarbonyl-2-oxazolidinethione derivatives containing a substituted pyridine ring.

Authors:  Gangyue Li; Xuhong Qian; Jingnan Cui; Qingchun Huang; Rong Zhang; Huai Guan
Journal:  J Agric Food Chem       Date:  2006-01-11       Impact factor: 5.279

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis of 6-formyl-pyridine-2-carboxylate derivatives and their telomerase inhibitory activities.

Authors:  Sang-sup Jew; Boon-saeng Park; Doo-yeon Lim; Myoung Goo Kim; In Kwon Chung; Joo Hee Kim; Chung Il Hong; Joon-Kyum Kim; Hong-Jun Park; Jun-Hee Lee; Hyeung-geun Park
Journal:  Bioorg Med Chem Lett       Date:  2003-02-24       Impact factor: 2.823

4.  Antimycobacterial activity of substituted isosteres of pyridine- and pyrazinecarboxylic acids.

Authors:  G A Wächter; M C Davis; A R Martin; S G Franzblau
Journal:  J Med Chem       Date:  1998-06-18       Impact factor: 7.446

  4 in total
  1 in total

1.  1,3-Dicyclo-hexyl-3-[(pyridin-2-yl)carbon-yl]urea monohydrate from synchrotron radiation.

Authors:  Alessandra C Pinheiro; Marcus V N de Souza; James L Wardell; Solange M S V Wardell; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-17
  1 in total

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