Literature DB >> 21203107

2-Iodo-N-(2-nitro-phenyl-sulfan-yl)aniline.

Iván Brito, Alejandro Cárdenas, Aldo Mundaca, Matías López-Rodríguez, Andrea Reyes.   

Abstract

In title compound, C(12)H(9)IN(2)O(2)S, the nitro group is rotated slightly, by 8.91 (3)°, out of the plane of the aromatic ring to which it is bonded. Between the two aromatic rings the CSN plane is at a dihedral angle of 84.0 (7)° to the HNC plane. Mol-ecules are linked by C-H⋯O inter-actions into a double helical supra-molecular architecture. There are no iodo-nitro, π-π or C-H⋯π(arene) inter-actions.

Entities:  

Year:  2008        PMID: 21203107      PMCID: PMC2962020          DOI: 10.1107/S1600536808019491

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Bernstein et al. (1995 ▶); Brito et al. (2004 ▶, 2005 ▶, 2006 ▶); Glidewell et al. (2003 ▶); Kuhle (1973 ▶); Pauling (1960 ▶).

Experimental

Crystal data

C12H9IN2O2S M = 372.17 Trigonal, a = 28.6221 (12) Å c = 8.4062 (17) Å V = 5963.9 (13) Å3 Z = 18 Mo Kα radiation μ = 2.57 mm−1 T = 298 (2) K 0.47 × 0.32 × 0.20 mm

Data collection

Nonius KappaCCD area-detector diffractometer Absorption correction: multi-scan (SORTAV; Blessing, 1995 ▶) T min = 0.380, T max = 0.600 11358 measured reflections 3251 independent reflections 2801 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.072 wR(F 2) = 0.205 S = 1.21 3251 reflections 166 parameters H-atom parameters constrained Δρmax = 1.04 e Å−3 Δρmin = −1.05 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808019491/fl2204sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808019491/fl2204Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H9IN2O2SZ = 18
Mr = 372.17F000 = 3240
Trigonal, R3Dx = 1.865 Mg m3
Hall symbol: -R 3Melting point: 472 K
a = 28.6221 (12) ÅMo Kα radiation λ = 0.71073 Å
b = 28.6221 (12) ÅCell parameters from 909 reflections
c = 8.4062 (17) Åθ = 1.4–28.5º
α = 90ºµ = 2.57 mm1
β = 90ºT = 298 (2) K
γ = 120ºPrism, yellow
V = 5963.9 (13) Å30.47 × 0.32 × 0.20 mm
Nonius KappaCCD area-detector diffractometer2801 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.059
Monochromator: graphiteθmax = 28.5º
φ scans, and ω scans with κ offsetsθmin = 1.4º
Absorption correction: multi-scan(SORTAV; Blessing, 1995)h = −31→37
Tmin = 0.380, Tmax = 0.600k = −36→35
11358 measured reflectionsl = −7→11
3251 independent reflections
Refinement on F2H-atom parameters constrained
Least-squares matrix: full  w = 1/[σ2(Fo2) + (0.087P)2 + 39.1076P] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.072(Δ/σ)max = 0.001
wR(F2) = 0.205Δρmax = 1.04 e Å3
S = 1.21Δρmin = −1.05 e Å3
3251 reflectionsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
166 parametersExtinction coefficient: 0.0064 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I11.003222 (18)0.07997 (2)0.27240 (7)0.0680 (3)
S10.81458 (6)−0.00495 (6)0.12352 (17)0.0458 (4)
N10.8810 (2)0.0367 (2)0.1625 (7)0.0565 (13)
H10.90420.02890.12440.068*
N20.70588 (19)−0.0418 (2)−0.0484 (7)0.0529 (12)
O10.7146 (2)−0.0679 (2)0.0488 (7)0.0679 (13)
O20.6610 (2)−0.0547 (3)−0.0985 (9)0.0865 (19)
C10.9522 (2)0.1110 (2)0.3204 (7)0.0450 (12)
C20.8998 (2)0.0847 (2)0.2574 (6)0.0427 (11)
C30.8677 (3)0.1073 (3)0.2903 (7)0.0498 (13)
H30.83280.09090.250.06*
C40.8862 (3)0.1532 (3)0.3809 (8)0.0559 (15)
H40.86420.16790.39970.067*
C50.9383 (3)0.1777 (3)0.4448 (8)0.0596 (17)
H50.95070.20830.50810.072*
C60.9706 (3)0.1569 (2)0.4143 (7)0.0518 (14)
H61.00530.17330.45620.062*
C70.80300 (19)0.02629 (18)−0.0433 (6)0.0340 (9)
C80.75198 (19)0.00701 (19)−0.1113 (6)0.0365 (10)
C90.7438 (2)0.0326 (3)−0.2401 (7)0.0482 (13)
H90.70930.0191−0.28160.058*
C100.7861 (3)0.0775 (3)−0.3060 (7)0.0549 (15)
H100.78090.0938−0.39460.066*
C110.8368 (3)0.0982 (2)−0.2383 (7)0.0495 (13)
H110.86560.1294−0.27980.059*
C120.8450 (2)0.0729 (2)−0.1094 (6)0.0391 (10)
H120.87950.0875−0.06630.047*
U11U22U33U12U13U23
I10.0502 (3)0.0627 (4)0.0973 (5)0.0329 (2)−0.0026 (2)0.0077 (2)
S10.0515 (8)0.0395 (7)0.0445 (7)0.0213 (6)−0.0044 (6)0.0046 (5)
N10.060 (3)0.049 (3)0.057 (3)0.025 (2)−0.028 (3)−0.012 (2)
N20.033 (2)0.045 (3)0.067 (3)0.009 (2)0.004 (2)−0.008 (2)
O10.055 (3)0.052 (3)0.076 (3)0.011 (2)0.014 (2)0.021 (2)
O20.036 (2)0.075 (4)0.124 (5)0.009 (2)−0.009 (3)−0.004 (3)
C10.052 (3)0.046 (3)0.038 (3)0.025 (2)0.004 (2)0.011 (2)
C20.057 (3)0.046 (3)0.031 (2)0.030 (2)−0.004 (2)−0.001 (2)
C30.059 (3)0.054 (3)0.044 (3)0.034 (3)−0.001 (2)−0.002 (2)
C40.066 (4)0.060 (4)0.050 (3)0.037 (3)0.014 (3)−0.003 (3)
C50.073 (4)0.048 (3)0.044 (3)0.020 (3)0.015 (3)−0.003 (2)
C60.052 (3)0.045 (3)0.044 (3)0.013 (2)0.006 (2)0.006 (2)
C70.036 (2)0.030 (2)0.034 (2)0.0157 (18)0.0034 (18)−0.0011 (17)
C80.032 (2)0.033 (2)0.041 (2)0.0138 (18)0.0014 (18)−0.0049 (18)
C90.048 (3)0.054 (3)0.050 (3)0.032 (3)−0.008 (2)−0.007 (2)
C100.076 (4)0.056 (3)0.044 (3)0.041 (3)−0.005 (3)0.001 (3)
C110.060 (3)0.042 (3)0.040 (3)0.020 (3)0.009 (2)0.009 (2)
C120.039 (2)0.036 (2)0.037 (2)0.014 (2)0.0032 (19)−0.0011 (18)
I1—C12.092 (6)C4—H40.93
S1—N11.696 (6)C5—C61.352 (10)
S1—C71.781 (5)C5—H50.93
N1—C21.441 (7)C6—H60.93
N1—H10.86C7—C121.390 (7)
N2—O11.216 (8)C7—C81.399 (7)
N2—O21.219 (7)C8—C91.392 (8)
N2—C81.458 (7)C9—C101.365 (10)
C1—C61.391 (9)C9—H90.93
C1—C21.402 (8)C10—C111.386 (10)
C2—C31.392 (8)C10—H100.93
C3—C41.375 (9)C11—C121.387 (8)
C3—H30.93C11—H110.93
C4—C51.400 (11)C12—H120.93
N1—S1—C7102.9 (3)C5—C6—C1120.3 (6)
C2—N1—S1122.0 (5)C5—C6—H6119.8
C2—N1—H1119C1—C6—H6119.8
S1—N1—H1119C12—C7—C8116.5 (5)
O1—N2—O2123.7 (6)C12—C7—S1120.5 (4)
O1—N2—C8117.8 (5)C8—C7—S1122.9 (4)
O2—N2—C8118.5 (6)C9—C8—C7121.8 (5)
C6—C1—C2121.3 (6)C9—C8—N2118.4 (5)
C6—C1—I1119.6 (5)C7—C8—N2119.7 (5)
C2—C1—I1119.1 (4)C10—C9—C8120.5 (5)
C3—C2—C1117.1 (5)C10—C9—H9119.8
C3—C2—N1122.3 (5)C8—C9—H9119.8
C1—C2—N1120.6 (5)C9—C10—C11118.8 (6)
C4—C3—C2121.6 (6)C9—C10—H10120.6
C4—C3—H3119.2C11—C10—H10120.6
C2—C3—H3119.2C10—C11—C12120.8 (5)
C3—C4—C5119.9 (6)C10—C11—H11119.6
C3—C4—H4120.1C12—C11—H11119.6
C5—C4—H4120.1C11—C12—C7121.5 (5)
C6—C5—C4119.8 (6)C11—C12—H12119.3
C6—C5—H5120.1C7—C12—H12119.3
C4—C5—H5120.1
C7—S1—N1—C283.9 (5)C12—C7—C8—C91.0 (7)
C6—C1—C2—C31.3 (8)S1—C7—C8—C9178.9 (4)
I1—C1—C2—C3−179.0 (4)C12—C7—C8—N2180.0 (5)
C6—C1—C2—N1−179.0 (5)S1—C7—C8—N2−2.1 (7)
I1—C1—C2—N10.8 (7)O1—N2—C8—C9170.0 (6)
S1—N1—C2—C3−16.1 (8)O2—N2—C8—C9−8.4 (8)
S1—N1—C2—C1164.2 (4)O1—N2—C8—C7−9.0 (8)
C1—C2—C3—C4−0.2 (9)O2—N2—C8—C7172.6 (6)
N1—C2—C3—C4−179.9 (6)C7—C8—C9—C101.0 (9)
C2—C3—C4—C5−1.2 (10)N2—C8—C9—C10−178.0 (5)
C3—C4—C5—C61.4 (10)C8—C9—C10—C11−2.5 (9)
C4—C5—C6—C1−0.3 (9)C9—C10—C11—C122.2 (9)
C2—C1—C6—C5−1.0 (9)C10—C11—C12—C7−0.3 (9)
I1—C1—C6—C5179.2 (5)C8—C7—C12—C11−1.3 (7)
N1—S1—C7—C121.6 (5)S1—C7—C12—C11−179.3 (4)
N1—S1—C7—C8−176.3 (4)
D—H···AD—HH···AD···AD—H···A
C10—H10···O1i0.932.553.445 (10)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10⋯O1i0.932.553.445 (10)161

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  N-(triphenylmethylsulfanyl)phthalimide.

Authors:  Iván Brito; Danitza Vargas; Andrea Reyes; Alejandro Cárdenas; Matías López-Rodríguez
Journal:  Acta Crystallogr C       Date:  2005-03-11       Impact factor: 1.172

4.  4-iodo-N-(2-nitrophenylsulfanyl)aniline: pi-stacked sheets generated by a combination of N-H...O and C-H...O hydrogen bonds.

Authors:  Christopher Glidewell; John N Low; Janet M S Skakle; James L Wardell
Journal:  Acta Crystallogr C       Date:  2003-02-11       Impact factor: 1.172

  4 in total
  1 in total

1.  1,2,4-Triazine Sulfonamides: Synthesis by Sulfenamide Intermediates, In Vitro Anticancer Screening, Structural Characterization, and Molecular Docking Study.

Authors:  Danuta Branowska; Zbigniew Karczmarzyk; Ewa Wolińska; Waldemar Wysocki; Maja Morawiak; Zofia Urbańczyk-Lipkowska; Anna Bielawska; Krzysztof Bielawski
Journal:  Molecules       Date:  2020-05-16       Impact factor: 4.411

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.