Literature DB >> 21202993

Redetermination of the hexa-gonal struvite analogue Cs[Mg(OH(2))(6)](PO(4)).

Matthias Weil1.   

Abstract

The structure of the hexa-gonal modification of caesium hexa-aqua-magnesium phosphate has been redetermined from single-crystal X-ray data. The previous refinement from photographic data [Ferrari, Calvaca & Nardelli (1955 ▶). Gazz. Chim. Ital.85, 1232-1238] was basically confirmed, but with all H atoms located and with all non H-atoms refined with anisotropic displacement parameters. The structure can be derived from the NiAs structure type: the PO(4) tetra-hedra (3m. symmetry) are on the Ni positions and the complex [Mg(OH(2))(6)] octa-hedra (3m. symmetry) are on the As positions. The building units are connected to each other by hydrogen bonds. The Cs(+) cations (3m. symmetry) are located in the voids of this arrangement and exhibit a distorted cubocta-hedral 12-coordination by the O atoms of the water mol-ecules.

Entities:  

Year:  2008        PMID: 21202993      PMCID: PMC2961905          DOI: 10.1107/S1600536808023283

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The crystal structure of struvite, NH4[Mg(OH2)6](PO4), was reported by Whitaker & Jeffery (1970a ▶,b ▶). Structure determinations of the hexa­gonal and cubic forms of Cs[Mg(OH2)6](PO4) were performed by Ferrari et al. (1955 ▶) and Massa et al. (2003 ▶), respectively. Crystal growth of struvite-like compounds using the gel diffusion technique was reported by Banks et al. (1975 ▶). For general background, see: Flack (1983 ▶).

Experimental

Crystal data

Cs[Mg(H2O)6](PO4) M = 360.29 Hexagonal, a = 6.8827 (8) Å c = 11.9188 (16) Å V = 488.97 (10) Å3 Z = 2 Mo Kα radiation μ = 4.04 mm−1 T = 293 (2) K 0.46 × 0.38 × 0.38 mm

Data collection

Stoe IPDS diffractometer Absorption correction: numerical (HABITUS; Herrendorf, 1997 ▶) T min = 0.213, T max = 0.327 5412 measured reflections 368 independent reflections 367 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.016 wR(F 2) = 0.034 S = 1.29 368 reflections 39 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.31 e Å−3 Absolute structure: Flack (1983 ▶), with 164 Friedel pairs Flack parameter: −0.01 (3) Data collection: EXPOSE in IPDS Software (Stoe & Cie, 1998 ▶); cell refinement: CELL in IPDS Software; data reduction: INTEGRATE in IPDS Software; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ATOMS (Dowty, 2004 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808023283/br2080sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808023283/br2080Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
Cs[Mg(H2O1)6](PO4)Z = 2
Mr = 360.29F000 = 348
Hexagonal, P63mcDx = 2.447 Mg m3
Hall symbol: P 6c -2cMo Kα radiation λ = 0.71073 Å
a = 6.8827 (8) ÅCell parameters from 1544 reflections
b = 6.8827 (8) Åθ = 3.4–25.9º
c = 11.9188 (16) ŵ = 4.04 mm1
α = 90ºT = 293 (2) K
β = 90ºBlock, colourless
γ = 120º0.46 × 0.38 × 0.38 mm
V = 488.97 (10) Å3
Stoe IPDS diffractometer368 independent reflections
Radiation source: fine-focus sealed tube367 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.025
T = 293(2) Kθmax = 25.7º
ω scansθmin = 3.4º
Absorption correction: numerical(HABITUS; Herrendorf, 1997)h = −8→8
Tmin = 0.213, Tmax = 0.327k = −8→8
5412 measured reflectionsl = −12→13
Refinement on F2Hydrogen site location: difference Fourier map
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.016  w = 1/[σ2(Fo2) + (0.0029P)2 + 0.8141P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.034(Δ/σ)max < 0.001
S = 1.29Δρmax = 0.40 e Å3
368 reflectionsΔρmin = −0.31 e Å3
39 parametersExtinction correction: none
4 restraintsAbsolute structure: Flack (1983), with 164 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.01 (3)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cs0.33330.66670.02181 (4)0.03126 (15)
Mg0.66670.33330.1436 (2)0.0159 (5)
P0.00000.00000.29985 (14)0.0137 (5)
O10.1220 (2)0.2440 (4)0.3413 (3)0.0173 (6)
O20.00000.00000.1707 (5)0.0189 (13)
O30.3747 (6)0.1873 (3)0.0521 (3)0.0265 (9)
O40.5229 (3)0.0458 (5)0.2427 (3)0.0282 (8)
H10.243 (8)0.122 (4)0.094 (5)0.048 (9)*
H20.350 (12)0.175 (6)−0.021 (4)0.048 (9)*
H30.397 (8)−0.010 (14)0.272 (5)0.048 (9)*
U11U22U33U12U13U23
Cs0.02671 (16)0.02671 (16)0.0404 (3)0.01335 (8)0.0000.000
Mg0.0158 (8)0.0158 (8)0.0160 (16)0.0079 (4)0.0000.000
P0.0139 (5)0.0139 (5)0.0134 (13)0.0069 (2)0.0000.000
O10.0172 (9)0.0139 (13)0.0195 (17)0.0070 (7)−0.0023 (6)−0.0046 (12)
O20.0177 (19)0.0177 (19)0.021 (4)0.0089 (10)0.0000.000
O30.0142 (14)0.0406 (14)0.016 (3)0.0071 (7)−0.0023 (11)−0.0012 (5)
O40.0191 (11)0.0252 (19)0.042 (2)0.0126 (10)0.0096 (7)0.0191 (15)
Cs—O3i3.469 (5)Mg—O32.054 (4)
Cs—O3ii3.469 (5)Mg—O3v2.054 (4)
Cs—O3iii3.469 (5)Mg—O4ix2.082 (3)
Cs—O3iv3.469 (5)Mg—O42.082 (3)
Cs—O3v3.469 (5)Mg—O4v2.082 (3)
Cs—O33.469 (5)Mg—Csx4.2306 (10)
Cs—O4i3.470 (4)Mg—Csxi4.2306 (10)
Cs—O4iv3.470 (4)Mg—Csxii4.508 (3)
Cs—O4v3.470 (4)P—O11.536 (3)
Cs—O4vi3.742 (4)P—O1iv1.536 (3)
Cs—O4vii3.742 (4)P—O1xiii1.536 (3)
Cs—O4viii3.742 (4)P—O21.539 (6)
Mg—O3ix2.054 (4)
O3i—Cs—O3ii51.51 (11)O3v—Cs—O4vii97.18 (5)
O3i—Cs—O3iii67.77 (11)O3—Cs—O4vii118.02 (7)
O3ii—Cs—O3iii118.93 (2)O4i—Cs—O4vii112.101 (19)
O3i—Cs—O3iv118.93 (2)O4iv—Cs—O4vii145.46 (3)
O3ii—Cs—O3iv165.52 (11)O4v—Cs—O4vii145.46 (3)
O3iii—Cs—O3iv51.51 (11)O4vi—Cs—O4vii46.74 (8)
O3i—Cs—O3v118.93 (2)O3i—Cs—O4viii118.02 (7)
O3ii—Cs—O3v67.77 (11)O3ii—Cs—O4viii97.18 (5)
O3iii—Cs—O3v165.52 (11)O3iii—Cs—O4viii118.02 (7)
O3iv—Cs—O3v118.93 (2)O3iv—Cs—O4viii97.18 (5)
O3i—Cs—O3165.52 (11)O3v—Cs—O4viii71.50 (7)
O3ii—Cs—O3118.93 (2)O3—Cs—O4viii71.50 (7)
O3iii—Cs—O3118.93 (2)O4i—Cs—O4viii145.46 (3)
O3iv—Cs—O367.77 (11)O4iv—Cs—O4viii145.46 (3)
O3v—Cs—O351.51 (11)O4v—Cs—O4viii112.101 (19)
O3i—Cs—O4i48.58 (7)O4vi—Cs—O4viii46.74 (8)
O3ii—Cs—O4i48.58 (7)O4vii—Cs—O4viii46.74 (8)
O3iii—Cs—O4i88.12 (6)O3ix—Mg—O394.42 (16)
O3iv—Cs—O4i117.22 (7)O3ix—Mg—O3v94.42 (16)
O3v—Cs—O4i88.12 (6)O3—Mg—O3v94.42 (16)
O3—Cs—O4i117.22 (7)O3ix—Mg—O4ix87.27 (10)
O3i—Cs—O4iv88.12 (6)O3—Mg—O4ix177.5 (2)
O3ii—Cs—O4iv117.22 (7)O3v—Mg—O4ix87.27 (10)
O3iii—Cs—O4iv48.58 (7)O3ix—Mg—O487.27 (10)
O3iv—Cs—O4iv48.58 (7)O3—Mg—O487.27 (10)
O3v—Cs—O4iv117.22 (7)O3v—Mg—O4177.5 (2)
O3—Cs—O4iv88.12 (6)O4ix—Mg—O490.98 (19)
O4i—Cs—O4iv68.67 (8)O3ix—Mg—O4v177.5 (2)
O3i—Cs—O4v117.22 (7)O3—Mg—O4v87.27 (10)
O3ii—Cs—O4v88.12 (6)O3v—Mg—O4v87.27 (10)
O3iii—Cs—O4v117.22 (7)O4ix—Mg—O4v90.98 (19)
O3iv—Cs—O4v88.12 (6)O4—Mg—O4v90.98 (19)
O3v—Cs—O4v48.58 (7)O1—P—O1iv110.17 (14)
O3—Cs—O4v48.58 (7)O1—P—O1xiii110.17 (14)
O4i—Cs—O4v68.67 (8)O1iv—P—O1xiii110.17 (14)
O4iv—Cs—O4v68.67 (8)O1—P—O2108.76 (14)
O3i—Cs—O4vi97.18 (5)O1iv—P—O2108.76 (14)
O3ii—Cs—O4vi118.02 (7)O1xiii—P—O2108.76 (14)
O3iii—Cs—O4vi71.50 (7)Mg—O3—Csx96.63 (6)
O3iv—Cs—O4vi71.50 (7)Mg—O3—Cs96.63 (6)
O3v—Cs—O4vi118.02 (7)Csx—O3—Cs165.52 (11)
O3—Cs—O4vi97.18 (5)Mg—O3—H1116 (4)
O4i—Cs—O4vi145.46 (3)Mg—O3—H2132 (5)
O4iv—Cs—O4vi112.101 (19)H1—O3—H2113 (6)
O4v—Cs—O4vi145.46 (3)Mg—O4—Csx96.07 (16)
O3i—Cs—O4vii71.50 (7)Mg—O4—Csxii97.31 (14)
O3ii—Cs—O4vii71.50 (7)Csx—O4—Csxii166.63 (10)
O3iii—Cs—O4vii97.18 (5)Mg—O4—H3125 (4)
O3iv—Cs—O4vii118.02 (7)
D—H···AD—HH···AD···AD—H···A
O3—H1···O20.93 (4)1.71 (4)2.643 (5)180 (6)
O3—H2···O1xiv0.88 (4)1.76 (5)2.630 (5)168 (7)
O4—H3···O1xiii0.83 (4)1.85 (4)2.672 (3)177 (8)
Table 1

Selected bond lengths (Å)

Cs—O3i3.469 (5)
Cs—O4i3.470 (4)
Cs—O4ii3.742 (4)
Mg—O32.054 (4)
Mg—O42.082 (3)
P—O11.536 (3)
P—O21.539 (6)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H1⋯O20.93 (4)1.71 (4)2.643 (5)180 (6)
O3—H2⋯O1iii0.88 (4)1.76 (5)2.630 (5)168 (7)
O4—H3⋯O1iv0.83 (4)1.85 (4)2.672 (3)177 (8)

Symmetry codes: (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A new cubic form of caesium hexaaquamagnesium phosphate, Cs[Mg(H2O)6](PO4).

Authors:  Werner Massa; Olga V Yakubovich; Olga V Dimitrova
Journal:  Acta Crystallogr C       Date:  2003-07-31       Impact factor: 1.172

  2 in total

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