Literature DB >> 21202840

Benzene-1,3,5-tricarboxylic acid-1,2-bis-(1,2,4-triazol-4-yl)ethane-water (4/1/2).

Hesham A Habib1, Christoph Janiak.   

Abstract

The title compound, 4C(9)H(6)O(6)·C(6)H(8)N(6)·2H(2)O, crystallizes in a layer structure where each sheet is composed of anellated hydrogen-bonded rings of six distinct sizes: R(2) (2)(16), R(3) (3)(18), R(4) (4)(12), R(4) (4)(18), R(4) (4)(22) and R(4) (4)(25). The two largest rings, viz. R(4) (4)(22) and R(4) (4)(25), are associated with O-H⋯N bonds from the carboxyl groups to the triazole rings. The typical head-to-tail carbox-yl-carboxyl R(2) (2)(8) motif is not observed.

Entities:  

Year:  2008        PMID: 21202840      PMCID: PMC2961855          DOI: 10.1107/S1600536808015808

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Althoff et al. (2006 ▶); Dale & Elsegood (2004 ▶); Dale et al. (2004 ▶); Dorn et al. (2005 ▶, 2006 ▶); Du et al. (2005 ▶); Etter et al. (1990 ▶); Fan et al. (2005 ▶); Goldberg & Bernstein (2007 ▶); Janiak (2000 ▶); Shattock et al. (2005 ▶); Turner et al. (2008 ▶); Wang & Wang (2005 ▶); Wisser & Janiak (2007a ▶,b ▶).

Experimental

Crystal data

4C9H6O6·C6H8N6·2H2O M = 1040.76 Triclinic, a = 9.7989 (1) Å b = 10.7511 (2) Å c = 12.6578 (2) Å α = 108.801 (1)° β = 98.737 (1)° γ = 113.340 (1)° V = 1097.44 (3) Å3 Z = 1 Mo Kα radiation μ = 0.13 mm−1 T = 203 (2) K 0.37 × 0.05 × 0.02 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.952, T max = 0.997 20984 measured reflections 4824 independent reflections 3452 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.105 S = 1.02 4824 reflections 359 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Crystal Impact, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808015808/kj2089sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808015808/kj2089Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
4C9H6O6·C6H8N6·2H2OZ = 1
Mr = 1040.76F000 = 538
Triclinic, P1Dx = 1.575 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 9.7989 (1) ÅCell parameters from 5028 reflections
b = 10.7511 (2) Åθ = 2.2–31.5º
c = 12.6578 (2) ŵ = 0.13 mm1
α = 108.801 (1)ºT = 203 (2) K
β = 98.737 (1)ºNeedle, colourless
γ = 113.340 (1)º0.37 × 0.05 × 0.02 mm
V = 1097.44 (3) Å3
Bruker APEXII CCD area-detector diffractometer4824 independent reflections
Radiation source: fine-focus sealed tube3452 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.036
T = 203(2) Kθmax = 27.1º
ω scansθmin = 1.8º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.952, Tmax = 0.997k = −13→13
20984 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.105  w = 1/[σ2(Fo2) + (0.0562P)2 + 0.0985P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
4824 reflectionsΔρmax = 0.25 e Å3
359 parametersΔρmin = −0.24 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. IR (KBr) 3512m (νCOO-H), 3427m (νCOO-H), 3122m, 1886m, 1704 s, (νasymCO2), 1539masymCO2),1452 s (νsymCO2), 1356w (νsymCO2), 1320w (δOH···O),1285m, 1225m, 1190m, 1071m, 1020m, 986m, 936m (γOH···O), 905m, 870w, 844w, 814w, 745 s, 683 s, 666 s, 936m, 605w, 570w, 510m, 448m cm-1.Thermogravimetric analysis (simultaneous thermoanalysis apparatus STA 409 C from Netzsch under nitrogen with a heating rate of 10 K min-1 in the range of 323 to 920 K): A sample of the compound shows the first weight loss in the temperature range 450–490 K which corresponds to the removal of the water molecule (obs. 3.67, calcd. 3.45%). From 550 to 610 K a less well resolved weight loss of about 17% occurs which is assigned to the half btre molecule (calcd. 15.8%). A third weight loss in the range 610–650 K of around 40% is assigned to the removal of one H~3~btc molecule (calcd. 40.3%). A weight loss continues to 920 K where 18.6% of the original mass is retained.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > σ(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.35077 (13)0.71622 (12)0.20868 (9)0.0281 (3)
O21.12433 (15)0.50380 (13)0.11195 (10)0.0342 (3)
H21.169 (2)0.490 (2)0.0526 (19)0.051*
O30.72628 (14)0.32810 (13)0.28747 (10)0.0357 (3)
O40.75183 (14)0.47603 (13)0.46864 (10)0.0295 (3)
H40.658 (3)0.402 (2)0.4509 (17)0.044*
O51.23563 (17)0.97506 (14)0.69889 (11)0.0479 (4)
O61.41605 (14)1.03213 (13)0.61107 (11)0.0335 (3)
H61.473 (3)1.117 (2)0.6791 (19)0.050*
C11.15857 (19)0.65177 (17)0.30595 (13)0.0226 (3)
C21.01588 (19)0.54260 (17)0.29865 (13)0.0241 (4)
H2A0.96030.45200.23060.031 (5)*
C30.95434 (19)0.56593 (17)0.39110 (13)0.0224 (3)
C41.03774 (18)0.69911 (17)0.49313 (13)0.0230 (3)
H4A0.99630.71590.55550.028*
C51.18299 (19)0.80705 (17)0.50200 (13)0.0228 (3)
C61.24244 (19)0.78375 (17)0.40836 (13)0.0230 (3)
H6A1.33970.85760.41440.028*
C71.22269 (19)0.62928 (17)0.20573 (13)0.0235 (3)
C80.79976 (19)0.44429 (17)0.37606 (14)0.0237 (3)
C91.2777 (2)0.94488 (18)0.61364 (14)0.0260 (4)
O70.23309 (14)0.11931 (13)0.42638 (10)0.0327 (3)
H70.230 (2)0.064 (2)0.349 (2)0.049*
O80.47138 (14)0.26410 (13)0.43007 (10)0.0369 (3)
O90.82100 (16)0.72343 (14)0.77430 (11)0.0405 (3)
H90.916 (3)0.808 (3)0.814 (2)0.061*
O100.75891 (16)0.79239 (14)0.93837 (11)0.0487 (4)
O110.23548 (16)0.46243 (14)0.93776 (11)0.0443 (4)
O120.10133 (15)0.22723 (13)0.79990 (11)0.0360 (3)
H120.029 (3)0.214 (2)0.8372 (19)0.054*
C110.40237 (18)0.33372 (17)0.60392 (13)0.0226 (3)
C120.54215 (19)0.46733 (17)0.66014 (14)0.0248 (4)
H12A0.61370.49320.61930.030*
C130.57695 (19)0.56305 (17)0.77641 (14)0.0252 (4)
C140.47026 (19)0.52582 (17)0.83609 (14)0.0259 (4)
H14A0.49290.59080.91440.031*
C150.33011 (19)0.39277 (17)0.78027 (14)0.0242 (4)
C160.29563 (19)0.29562 (17)0.66414 (13)0.0226 (3)
H16A0.20120.20520.62670.027*
C170.37241 (19)0.23634 (17)0.47946 (14)0.0255 (4)
C180.7287 (2)0.70561 (18)0.83851 (15)0.0295 (4)
C190.2168 (2)0.36255 (19)0.84716 (14)0.0276 (4)
O131.09496 (16)0.94370 (15)0.86765 (12)0.0442 (4)
H13A1.134 (3)1.031 (3)0.932 (2)0.066*
H13B1.129 (3)0.959 (3)0.813 (2)0.066*
C210.2033 (2)−0.17823 (19)0.03864 (14)0.0307 (4)
H21A0.1519−0.2613−0.03490.037*
C220.3793 (2)0.02501 (18)0.18472 (14)0.0277 (4)
H22A0.47470.11150.23320.033*
C230.4714 (2)−0.0680 (2)0.01332 (16)0.0338 (4)
H23A0.4241−0.1585−0.06050.041*
H23B0.5608−0.06570.06230.041*
N10.25099 (16)−0.01876 (15)0.21283 (12)0.0281 (3)
N20.13810 (16)−0.14927 (15)0.11899 (12)0.0293 (3)
N30.35506 (16)−0.07258 (15)0.07521 (11)0.0272 (3)
U11U22U33U12U13U23
O10.0239 (6)0.0268 (6)0.0238 (6)0.0049 (5)0.0126 (5)0.0063 (5)
O20.0292 (7)0.0311 (7)0.0215 (6)0.0013 (6)0.0140 (5)0.0010 (5)
O30.0264 (7)0.0300 (7)0.0276 (7)−0.0011 (6)0.0100 (5)0.0032 (6)
O40.0195 (6)0.0265 (6)0.0300 (6)0.0014 (5)0.0130 (5)0.0073 (5)
O50.0467 (9)0.0343 (7)0.0338 (7)0.0005 (6)0.0268 (7)−0.0017 (6)
O60.0236 (7)0.0270 (6)0.0248 (6)−0.0018 (5)0.0099 (5)−0.0015 (5)
C10.0207 (8)0.0239 (8)0.0197 (8)0.0080 (7)0.0084 (7)0.0075 (7)
C20.0208 (9)0.0237 (8)0.0187 (8)0.0054 (7)0.0065 (7)0.0049 (7)
C30.0187 (8)0.0223 (8)0.0225 (8)0.0070 (7)0.0074 (7)0.0081 (7)
C40.0209 (8)0.0235 (8)0.0221 (8)0.0079 (7)0.0111 (7)0.0082 (7)
C50.0207 (9)0.0219 (8)0.0228 (8)0.0079 (7)0.0091 (7)0.0078 (7)
C60.0178 (8)0.0226 (8)0.0229 (8)0.0050 (7)0.0093 (7)0.0076 (7)
C70.0211 (9)0.0219 (8)0.0209 (8)0.0058 (7)0.0084 (7)0.0065 (7)
C80.0191 (8)0.0245 (8)0.0240 (8)0.0069 (7)0.0083 (7)0.0100 (7)
C90.0248 (9)0.0218 (8)0.0250 (8)0.0062 (7)0.0131 (7)0.0065 (7)
O70.0237 (7)0.0300 (6)0.0214 (6)−0.0013 (5)0.0110 (5)0.0004 (5)
O80.0273 (7)0.0332 (7)0.0261 (6)−0.0017 (6)0.0167 (6)0.0013 (5)
O90.0282 (7)0.0291 (7)0.0359 (7)−0.0047 (6)0.0161 (6)0.0014 (6)
O100.0416 (8)0.0347 (7)0.0305 (7)−0.0044 (6)0.0152 (6)−0.0049 (6)
O110.0399 (8)0.0402 (8)0.0307 (7)0.0046 (6)0.0237 (6)0.0018 (6)
O120.0269 (7)0.0324 (7)0.0349 (7)0.0026 (6)0.0202 (6)0.0079 (6)
C110.0199 (9)0.0220 (8)0.0225 (8)0.0073 (7)0.0090 (7)0.0081 (7)
C120.0223 (9)0.0240 (8)0.0255 (8)0.0077 (7)0.0123 (7)0.0095 (7)
C130.0234 (9)0.0218 (8)0.0242 (8)0.0072 (7)0.0094 (7)0.0063 (7)
C140.0243 (9)0.0239 (8)0.0220 (8)0.0075 (7)0.0101 (7)0.0051 (7)
C150.0223 (9)0.0251 (8)0.0245 (8)0.0096 (7)0.0109 (7)0.0101 (7)
C160.0197 (8)0.0208 (8)0.0223 (8)0.0060 (7)0.0083 (7)0.0072 (7)
C170.0219 (9)0.0237 (8)0.0240 (8)0.0051 (7)0.0104 (7)0.0082 (7)
C180.0273 (10)0.0236 (9)0.0274 (9)0.0054 (8)0.0115 (8)0.0060 (7)
C190.0242 (9)0.0311 (9)0.0227 (8)0.0092 (8)0.0109 (7)0.0094 (7)
O130.0374 (8)0.0341 (7)0.0289 (7)−0.0054 (6)0.0157 (6)0.0019 (6)
C210.0262 (9)0.0272 (9)0.0209 (8)0.0011 (7)0.0097 (7)0.0032 (7)
C220.0236 (9)0.0258 (8)0.0229 (8)0.0040 (7)0.0103 (7)0.0062 (7)
C230.0336 (10)0.0365 (10)0.0329 (9)0.0138 (8)0.0233 (8)0.0144 (8)
N10.0233 (8)0.0249 (7)0.0228 (7)0.0023 (6)0.0103 (6)0.0049 (6)
N20.0223 (8)0.0280 (7)0.0234 (7)0.0022 (6)0.0105 (6)0.0053 (6)
N30.0239 (8)0.0268 (7)0.0235 (7)0.0055 (6)0.0132 (6)0.0079 (6)
O1—C71.2182 (19)O12—C191.298 (2)
O2—C71.3221 (19)O12—H120.90 (2)
O2—H20.92 (2)C11—C121.390 (2)
O3—C81.2147 (19)C11—C161.395 (2)
O4—C81.3217 (19)C11—C171.489 (2)
O4—H40.88 (2)C12—C131.391 (2)
O5—C91.2065 (19)C12—H12A0.9400
O6—C91.3204 (19)C13—C141.388 (2)
O6—H60.91 (2)C13—C181.497 (2)
C1—C21.390 (2)C14—C151.389 (2)
C1—C61.391 (2)C14—H14A0.9400
C1—C71.492 (2)C15—C161.395 (2)
C2—C31.393 (2)C15—C191.494 (2)
C2—H2A0.9400C16—H16A0.9400
C3—C41.395 (2)O13—H13A0.91 (2)
C3—C81.491 (2)O13—H13B0.85 (3)
C4—C51.394 (2)C21—N21.300 (2)
C4—H4A0.9400C21—N31.353 (2)
C5—C61.393 (2)C21—H21A0.9400
C5—C91.489 (2)C22—N11.306 (2)
C6—H6A0.9400C22—N31.358 (2)
O7—C171.3090 (19)C22—H22A0.9400
O7—H70.96 (2)C23—N31.472 (2)
O8—C171.2230 (18)C23—C23i1.513 (3)
O9—C181.304 (2)C23—H23A0.9800
O9—H90.91 (3)C23—H23B0.9800
O10—C181.210 (2)N1—N21.3784 (18)
O11—C191.2201 (19)
C7—O2—H2110.6 (13)C14—C13—C12119.73 (15)
C8—O4—H4107.2 (13)C14—C13—C18119.44 (14)
C9—O6—H6112.6 (13)C12—C13—C18120.83 (14)
C2—C1—C6119.32 (14)C13—C14—C15120.10 (15)
C2—C1—C7120.95 (14)C13—C14—H14A120.0
C6—C1—C7119.73 (14)C15—C14—H14A120.0
C1—C2—C3120.72 (14)C14—C15—C16120.34 (14)
C1—C2—H2A119.6C14—C15—C19117.53 (14)
C3—C2—H2A119.6C16—C15—C19122.06 (15)
C2—C3—C4119.85 (14)C15—C16—C11119.51 (15)
C2—C3—C8117.56 (14)C15—C16—H16A120.2
C4—C3—C8122.59 (14)C11—C16—H16A120.2
C5—C4—C3119.53 (14)O8—C17—O7122.24 (14)
C5—C4—H4A120.2O8—C17—C11122.17 (15)
C3—C4—H4A120.2O7—C17—C11115.59 (13)
C6—C5—C4120.21 (14)O10—C18—O9125.16 (16)
C6—C5—C9119.87 (14)O10—C18—C13121.74 (15)
C4—C5—C9119.88 (13)O9—C18—C13113.10 (14)
C1—C6—C5120.34 (14)O11—C19—O12125.08 (15)
C1—C6—H6A119.8O11—C19—C15120.02 (15)
C5—C6—H6A119.8O12—C19—C15114.90 (14)
O1—C7—O2123.19 (14)H13A—O13—H13B110 (2)
O1—C7—C1124.36 (15)N2—C21—N3110.82 (14)
O2—C7—C1112.45 (13)N2—C21—H21A124.6
O3—C8—O4123.84 (15)N3—C21—H21A124.6
O3—C8—C3123.02 (14)N1—C22—N3110.10 (15)
O4—C8—C3113.14 (14)N1—C22—H22A124.9
O5—C9—O6122.58 (16)N3—C22—H22A124.9
O5—C9—C5124.55 (15)N3—C23—C23i111.15 (18)
O6—C9—C5112.86 (13)N3—C23—H23A109.4
C17—O7—H7107.8 (13)C23i—C23—H23A109.4
C18—O9—H9112.4 (14)N3—C23—H23B109.4
C19—O12—H12113.6 (14)C23i—C23—H23B109.4
C12—C11—C16119.86 (14)H23A—C23—H23B108.0
C12—C11—C17117.73 (14)C22—N1—N2107.37 (13)
C16—C11—C17122.41 (14)C21—N2—N1106.94 (13)
C11—C12—C13120.45 (14)C21—N3—C22104.77 (13)
C11—C12—H12A119.8C21—N3—C23127.89 (14)
C13—C12—H12A119.8C22—N3—C23127.25 (14)
D—H···AD—HH···AD···AD—H···A
O2—H2···O11ii0.92 (2)1.67 (2)2.594 (2)175 (2)
O4—H4···O80.88 (2)1.75 (2)2.626 (2)174 (2)
O6—H6···O1iii0.91 (2)1.84 (2)2.699 (2)157 (2)
O7—H7···N10.96 (2)1.75 (2)2.703 (2)172 (2)
O9—H9···O130.91 (3)1.63 (3)2.531 (2)170 (2)
O12—H12···N2iv0.90 (2)1.76 (2)2.644 (2)167 (2)
O13—H13A···O10v0.91 (2)1.81 (3)2.711 (2)171 (2)
O13—H13B···O50.85 (3)1.92 (3)2.751 (2)167 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O11i0.92 (2)1.67 (2)2.594 (2)175 (2)
O4—H4⋯O80.88 (2)1.75 (2)2.626 (2)174 (2)
O6—H6⋯O1ii0.91 (2)1.84 (2)2.699 (2)157 (2)
O7—H7⋯N10.96 (2)1.75 (2)2.703 (2)172 (2)
O9—H9⋯O130.91 (3)1.63 (3)2.531 (2)170 (2)
O12—H12⋯N2iii0.90 (2)1.76 (2)2.644 (2)167 (2)
O13—H13A⋯O10iv0.91 (2)1.81 (3)2.711 (2)171 (2)
O13—H13B⋯O50.85 (3)1.92 (3)2.751 (2)167 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  Step-wise dis-assembly of trimesic acid: mono- and bis(methanol) solvates.

Authors:  Sophie H Dale; Mark R J Elsegood; Simon J Richards
Journal:  Chem Commun (Camb)       Date:  2004-05-10       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  Hydrogen-bonding adducts of benzenepolycarboxylic acids with N,N-dimethylformamide: benzene-1,4-dicarboxylic acid N,N-dimethylformamide disolvate, benzene-1,2,4,5-tetracarboxylic acid N,N-dimethylformamide tetrasolvate and benzene-1,2,3-tricarboxylic acid N,N-dimethylformamide disolvate monohydrate.

Authors:  Sophie H Dale; Mark R J Elsegood
Journal:  Acta Crystallogr C       Date:  2004-05-31       Impact factor: 1.172

  4 in total
  2 in total

1.  Aqua-(2,2'-bipyridine-κN,N')bis-(thio-phene-2-carboxyl-ato-κO)copper(II).

Authors:  Reda F Mahmoud; Christoph Janiak
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-11

2.  3-(4-Fluoro-phen-yl)-6-meth-oxy-2-(4-pyrid-yl)quinoxaline.

Authors:  Hartmut Jahns; Pierre Koch; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-20
  2 in total

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