| Literature DB >> 21202834 |
Zhong-Long Wang, Kai-Lun Yao, Zu-Li Liu, Hui-Jin Xu.
Abstract
Cocrystallization of 4-carboxy-pyridine (Entities:
Year: 2008 PMID: 21202834 PMCID: PMC2961870 DOI: 10.1107/S1600536808015882
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H6NO2+·C7H5O6S− | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 950 reflections |
| θ = 3.1–19.7° | |
| µ = 0.27 mm−1 | |
| Needle, colorless | |
| 0.30 × 0.04 × 0.02 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 1522 reflections with |
| Radiation source: fine focus sealed Siemens Mo tube | |
| graphite | θmax = 25.0°, θmin = 2.9° |
| 0.3° wide ω exposures scans | |
| 13287 measured reflections | |
| 2545 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2545 reflections | Δρmax = 0.45 e Å−3 |
| 220 parameters | Δρmin = −0.37 e Å−3 |
| 5 restraints | Absolute structure: Flack (1983), 1056 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.1 (2) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.5027 (9) | 0.7437 (4) | 0.2884 (4) | 0.0404 (15) | |
| C2 | 0.4566 (8) | 0.6435 (4) | 0.2645 (3) | 0.0334 (13) | |
| C3 | 0.4291 (9) | 0.5677 (4) | 0.3235 (3) | 0.0362 (13) | |
| H3 | 0.3988 | 0.5009 | 0.3082 | 0.043* | |
| C4 | 0.4464 (9) | 0.5908 (4) | 0.4022 (3) | 0.0410 (15) | |
| C5 | 0.4945 (12) | 0.6910 (4) | 0.4256 (4) | 0.0563 (18) | |
| H5 | 0.5083 | 0.7069 | 0.4794 | 0.068* | |
| C6 | 0.5212 (12) | 0.7655 (4) | 0.3689 (4) | 0.062 (2) | |
| H6 | 0.5524 | 0.8319 | 0.3848 | 0.074* | |
| C7 | 0.4373 (9) | 0.6190 (4) | 0.1788 (3) | 0.0393 (14) | |
| O1 | 0.3740 (8) | 0.5263 (3) | 0.1634 (2) | 0.0556 (12) | |
| H1 | 0.335 (11) | 0.517 (5) | 0.1176 (19) | 0.083* | |
| O2 | 0.4714 (6) | 0.6826 (3) | 0.1260 (2) | 0.0496 (11) | |
| O3 | 0.5284 (8) | 0.8216 (3) | 0.2371 (2) | 0.0554 (13) | |
| H3A | 0.524 (13) | 0.799 (5) | 0.1914 (18) | 0.083* | |
| O4 | 0.5754 (7) | 0.5082 (3) | 0.5343 (2) | 0.0524 (11) | |
| O5 | 0.2154 (6) | 0.5225 (3) | 0.5150 (2) | 0.0519 (11) | |
| O6 | 0.4088 (7) | 0.3976 (2) | 0.4391 (2) | 0.0474 (10) | |
| S1 | 0.4079 (2) | 0.49700 (10) | 0.47738 (8) | 0.0424 (4) | |
| C8 | 0.4478 (9) | 0.1284 (4) | 0.6933 (4) | 0.0466 (15) | |
| C9 | 0.5068 (10) | 0.2291 (5) | 0.6931 (4) | 0.0551 (18) | |
| H9 | 0.5412 | 0.2611 | 0.7409 | 0.066* | |
| C10 | 0.5153 (10) | 0.2820 (5) | 0.6234 (4) | 0.0538 (17) | |
| H10 | 0.5557 | 0.3503 | 0.6230 | 0.065* | |
| C11 | 0.4091 (10) | 0.1365 (5) | 0.5529 (4) | 0.0531 (16) | |
| H11 | 0.3762 | 0.1060 | 0.5045 | 0.064* | |
| C12 | 0.4005 (9) | 0.0804 (4) | 0.6229 (4) | 0.0474 (15) | |
| H12 | 0.3635 | 0.0117 | 0.6223 | 0.057* | |
| C13 | 0.4301 (10) | 0.0658 (5) | 0.7697 (4) | 0.0491 (16) | |
| N1 | 0.4651 (8) | 0.2351 (4) | 0.5553 (4) | 0.0533 (14) | |
| H1A | 0.480 (8) | 0.267 (4) | 0.511 (2) | 0.064* | |
| O7 | 0.4546 (8) | 0.1208 (3) | 0.8342 (3) | 0.0669 (14) | |
| H7 | 0.478 (13) | 0.078 (4) | 0.870 (3) | 0.100* | |
| O8 | 0.3980 (8) | −0.0253 (3) | 0.7684 (3) | 0.0715 (14) |
| C1 | 0.037 (4) | 0.045 (3) | 0.040 (3) | −0.008 (3) | 0.006 (3) | 0.005 (3) |
| C2 | 0.025 (3) | 0.041 (3) | 0.035 (3) | 0.003 (2) | 0.000 (3) | 0.004 (2) |
| C3 | 0.028 (3) | 0.039 (3) | 0.042 (4) | −0.002 (2) | 0.002 (3) | 0.000 (3) |
| C4 | 0.034 (4) | 0.046 (3) | 0.043 (4) | −0.003 (3) | 0.007 (3) | 0.002 (3) |
| C5 | 0.077 (5) | 0.054 (3) | 0.038 (3) | −0.006 (4) | −0.006 (4) | −0.005 (3) |
| C6 | 0.085 (6) | 0.043 (3) | 0.057 (4) | −0.017 (4) | 0.009 (4) | −0.003 (3) |
| C7 | 0.035 (4) | 0.043 (3) | 0.040 (4) | 0.009 (3) | 0.001 (3) | 0.004 (3) |
| O1 | 0.079 (3) | 0.047 (2) | 0.041 (3) | −0.011 (2) | −0.012 (3) | −0.003 (2) |
| O2 | 0.048 (3) | 0.057 (2) | 0.043 (2) | −0.007 (2) | 0.002 (2) | 0.003 (2) |
| O3 | 0.075 (4) | 0.050 (2) | 0.042 (2) | −0.010 (2) | −0.003 (3) | 0.008 (2) |
| O4 | 0.054 (3) | 0.066 (2) | 0.037 (2) | −0.001 (2) | −0.012 (2) | −0.003 (2) |
| O5 | 0.040 (3) | 0.064 (3) | 0.052 (3) | 0.002 (2) | 0.021 (2) | 0.008 (2) |
| O6 | 0.054 (3) | 0.047 (2) | 0.042 (2) | 0.000 (2) | 0.000 (3) | −0.0028 (18) |
| S1 | 0.0461 (9) | 0.0454 (8) | 0.0356 (8) | −0.0018 (8) | 0.0026 (7) | 0.0006 (7) |
| C8 | 0.028 (4) | 0.051 (3) | 0.061 (4) | 0.008 (3) | −0.002 (3) | 0.002 (3) |
| C9 | 0.044 (4) | 0.059 (4) | 0.063 (5) | 0.002 (3) | −0.006 (4) | 0.003 (3) |
| C10 | 0.031 (4) | 0.060 (4) | 0.070 (5) | 0.000 (3) | −0.001 (4) | 0.007 (4) |
| C11 | 0.030 (4) | 0.070 (4) | 0.059 (4) | 0.001 (3) | 0.002 (4) | −0.009 (3) |
| C12 | 0.029 (3) | 0.060 (4) | 0.053 (4) | −0.001 (3) | −0.003 (4) | 0.006 (4) |
| C13 | 0.039 (4) | 0.053 (4) | 0.056 (4) | 0.010 (3) | −0.006 (4) | 0.009 (3) |
| N1 | 0.033 (3) | 0.065 (4) | 0.062 (4) | 0.003 (3) | 0.008 (3) | 0.011 (3) |
| O7 | 0.081 (4) | 0.064 (3) | 0.055 (3) | −0.001 (3) | −0.007 (3) | 0.006 (2) |
| O8 | 0.077 (4) | 0.062 (3) | 0.075 (3) | −0.008 (3) | −0.011 (3) | 0.015 (2) |
| C1—O3 | 1.343 (6) | O5—S1 | 1.462 (4) |
| C1—C6 | 1.382 (8) | O6—S1 | 1.446 (3) |
| C1—C2 | 1.401 (7) | C8—C12 | 1.370 (8) |
| C2—C3 | 1.409 (7) | C8—C9 | 1.371 (8) |
| C2—C7 | 1.477 (7) | C8—C13 | 1.523 (8) |
| C3—C4 | 1.357 (7) | C9—C10 | 1.359 (8) |
| C3—H3 | 0.9300 | C9—H9 | 0.9300 |
| C4—C5 | 1.401 (7) | C10—N1 | 1.336 (8) |
| C4—S1 | 1.775 (5) | C10—H10 | 0.9300 |
| C5—C6 | 1.371 (8) | C11—N1 | 1.340 (7) |
| C5—H5 | 0.9300 | C11—C12 | 1.383 (8) |
| C6—H6 | 0.9300 | C11—H11 | 0.9300 |
| C7—O2 | 1.233 (6) | C12—H12 | 0.9300 |
| C7—O1 | 1.306 (6) | C13—O8 | 1.209 (7) |
| O1—H1 | 0.82 (2) | C13—O7 | 1.306 (7) |
| O3—H3A | 0.82 (2) | N1—H1A | 0.85 (2) |
| O4—S1 | 1.472 (4) | O7—H7 | 0.83 (5) |
| O3—C1—C6 | 117.1 (5) | O6—S1—C4 | 107.7 (2) |
| O3—C1—C2 | 123.5 (5) | O5—S1—C4 | 105.9 (3) |
| C6—C1—C2 | 119.3 (5) | O4—S1—C4 | 106.4 (3) |
| C1—C2—C3 | 118.9 (5) | C12—C8—C9 | 120.1 (6) |
| C1—C2—C7 | 119.9 (5) | C12—C8—C13 | 117.4 (5) |
| C3—C2—C7 | 121.2 (5) | C9—C8—C13 | 122.5 (6) |
| C4—C3—C2 | 120.8 (5) | C10—C9—C8 | 120.1 (6) |
| C4—C3—H3 | 119.6 | C10—C9—H9 | 120.0 |
| C2—C3—H3 | 119.6 | C8—C9—H9 | 120.0 |
| C3—C4—C5 | 119.9 (5) | N1—C10—C9 | 119.3 (6) |
| C3—C4—S1 | 121.5 (4) | N1—C10—H10 | 120.3 |
| C5—C4—S1 | 118.6 (4) | C9—C10—H10 | 120.3 |
| C6—C5—C4 | 119.9 (6) | N1—C11—C12 | 119.7 (6) |
| C6—C5—H5 | 120.1 | N1—C11—H11 | 120.1 |
| C4—C5—H5 | 120.1 | C12—C11—H11 | 120.1 |
| C5—C6—C1 | 121.1 (5) | C8—C12—C11 | 118.5 (5) |
| C5—C6—H6 | 119.4 | C8—C12—H12 | 120.8 |
| C1—C6—H6 | 119.4 | C11—C12—H12 | 120.8 |
| O2—C7—O1 | 122.8 (5) | O8—C13—O7 | 125.3 (6) |
| O2—C7—C2 | 122.3 (5) | O8—C13—C8 | 121.7 (6) |
| O1—C7—C2 | 114.8 (5) | O7—C13—C8 | 113.0 (5) |
| C7—O1—H1 | 115 (5) | C10—N1—C11 | 122.3 (6) |
| C1—O3—H3A | 109 (5) | C10—N1—H1A | 119 (4) |
| O6—S1—O5 | 113.5 (3) | C11—N1—H1A | 119 (4) |
| O6—S1—O4 | 111.9 (2) | C13—O7—H7 | 105 (5) |
| O5—S1—O4 | 111.0 (2) |
| H··· | ||||
| O1—H1···O5i | 0.82 (2) | 1.82 (2) | 2.632 (5) | 170 (7) |
| N1—H1A···O2ii | 0.85 (2) | 2.57 (5) | 3.140 (7) | 125 (5) |
| C3—H3···O3ii | 0.93 | 2.51 | 3.379 (7) | 156. |
| O3—H3A···O6iii | 0.82 (2) | 2.57 (5) | 3.140 (5) | 127 (6) |
| O7—H7···O4iv | 0.83 (5) | 1.87 (4) | 2.654 (5) | 155 (8) |
| C10—H10···O8v | 0.93 | 2.46 | 3.152 (8) | 132. |
| C11—H11···O4vi | 0.93 | 2.57 | 3.257 (7) | 131. |
| N1—H1A···O6 | 0.85 (2) | 2.14 (3) | 2.902 (6) | 149 (5) |
| O3—H3A···O2 | 0.82 (2) | 1.90 (4) | 2.626 (5) | 146 (6) |
| C10—H10···O4 | 0.93 | 2.54 | 3.331 (7) | 143. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯O5i | 0.82 (2) | 1.82 (2) | 2.632 (5) | 170 (7) |
| N1—H1 | 0.85 (2) | 2.57 (5) | 3.140 (7) | 125 (5) |
| C3—H3⋯O3ii | 0.93 | 2.51 | 3.379 (7) | 156 |
| O3—H3 | 0.82 (2) | 2.57 (5) | 3.140 (5) | 127 (6) |
| O7—H7⋯O4iv | 0.83 (5) | 1.87 (4) | 2.654 (5) | 155 (8) |
| C10—H10⋯O8v | 0.93 | 2.46 | 3.152 (8) | 132 |
| C11—H11⋯O4vi | 0.93 | 2.57 | 3.257 (7) | 131 |
| N1—H1 | 0.85 (2) | 2.14 (3) | 2.902 (6) | 149 (5) |
| O3—H3 | 0.82 (2) | 1.90 (4) | 2.626 (5) | 146 (6) |
| C10—H10⋯O4 | 0.93 | 2.54 | 3.331 (7) | 143 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .