Literature DB >> 21202724

(4S,8S,9R,12E)-8,9,16,18-Tetrahydroxy-4-methyl-3-oxabicyclo[12.4.0]octadeca-12,14,16,18-tetraen-2-one monohydrate.

Ling-Ling Zhao, Yue Gai, Hisayoshi Kobayashi, Chang-Qi Hu, Hui-Ping Zhang.   

Abstract

The asymmetric unit of the title compound, C(18)H(24)O(6)·H(2)O, contains a 14-membered macrolide mol-ecule and a water mol-ecule. In the crystal structure, intra-molecular C-H⋯O and O-H⋯O hydrogen bonds help to stabilize the mol-ecular conformation, while inter-molecular O-H⋯O hydrogen bonds link the mol-ecules, forming an infinite network. The absolute configuration was assigned by comparison with related zearalenone compounds, but needs verification.

Entities:  

Year:  2008        PMID: 21202724      PMCID: PMC2961568          DOI: 10.1107/S1600536808010258

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the extraction of the components of Fusarium sp. 05ABR26 see: Zhao et al. (2008 ▶). For the crystal structure of zearalenol, see: Gelo-Pujić et al. (1994 ▶). For related zearalenone series compounds, see: Zinedine et al. (2007 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C18H24O6·H2O M = 354.39 Monoclinic, a = 18.23 (1) Å b = 8.078 (6) Å c = 13.86 (1) Å β = 118.441 (7)° V = 1795 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 293 (2) K 0.20 × 0.15 × 0.05 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.980, T max = 0.995 4458 measured reflections 2076 independent reflections 1804 reflections with I > 2σ(I) R int = 0.081

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.145 S = 1.03 2076 reflections 239 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.36 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SMART; data reduction: SAINT (Bruker, 2000 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808010258/im2058sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808010258/im2058Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H24O6·H2OF(000) = 760
Mr = 354.39Dx = 1.312 Mg m3
Monoclinic, C2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2yCell parameters from 687 reflections
a = 18.23 (1) Åθ = 2.3–26.4°
b = 8.078 (6) ŵ = 0.10 mm1
c = 13.86 (1) ÅT = 293 K
β = 118.441 (7)°Prismatic, colorless
V = 1795 (2) Å30.20 × 0.15 × 0.05 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2076 independent reflections
Radiation source: fine-focus sealed tube1804 reflections with I > 2σ(I)
graphiteRint = 0.081
φ and ω scansθmax = 27.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −23→22
Tmin = 0.980, Tmax = 0.995k = −10→4
4458 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0914P)2] where P = (Fo2 + 2Fc2)/3
2076 reflections(Δ/σ)max < 0.001
239 parametersΔρmax = 0.28 e Å3
4 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.87040 (13)0.9829 (4)0.35095 (16)0.0406 (6)
H10.90910.94900.40850.061*
O20.57709 (13)1.0102 (4)0.17058 (17)0.0424 (6)
H20.58571.01880.11790.064*
O30.94597 (14)0.9208 (5)0.55690 (19)0.0555 (9)
O40.88077 (12)0.9851 (4)0.65316 (15)0.0393 (6)
O50.72723 (16)1.0005 (5)0.9735 (2)0.0633 (10)
H50.76090.93641.01890.095*
O60.66693 (14)1.3026 (3)0.84561 (17)0.0397 (6)
H60.64041.36230.79230.060*
C10.79948 (18)0.9669 (4)0.4619 (2)0.0303 (7)
C20.79927 (18)0.9842 (4)0.3594 (2)0.0323 (6)
C30.72615 (18)1.0056 (4)0.2630 (2)0.0325 (7)
H30.72751.02290.19750.039*
C40.65057 (18)1.0013 (4)0.2639 (2)0.0329 (7)
C50.64859 (18)0.9820 (5)0.3630 (2)0.0339 (7)
H5A0.59740.98070.36260.041*
C60.72118 (18)0.9649 (4)0.4615 (2)0.0307 (6)
C70.88176 (18)0.9540 (5)0.5598 (2)0.0348 (8)
C80.95973 (17)0.9717 (5)0.7566 (2)0.0371 (8)
H80.99290.88130.75010.044*
C91.0079 (2)1.1292 (6)0.7784 (3)0.0518 (10)
H9A0.97481.21920.78170.078*
H9B1.02141.14880.72040.078*
H9C1.05831.12070.84700.078*
C100.9324 (2)0.9239 (5)0.8403 (3)0.0403 (8)
H10A0.98170.90750.91070.048*
H10B0.90310.81900.81860.048*
C110.8761 (2)1.0503 (5)0.8547 (3)0.0390 (8)
H11A0.83911.09990.78430.047*
H11B0.91001.13760.90370.047*
C120.8244 (2)0.9678 (5)0.9017 (3)0.0384 (8)
H12A0.79210.87860.85310.046*
H12B0.86210.91890.97210.046*
C130.76515 (19)1.0832 (5)0.9174 (2)0.0372 (8)
H130.79851.17460.96430.045*
C140.69633 (19)1.1591 (4)0.8122 (2)0.0319 (7)
H140.72181.19760.76800.038*
C150.6218 (2)1.0502 (5)0.7392 (3)0.0402 (8)
H15A0.60400.99340.78610.048*
H15B0.57661.12250.69140.048*
C160.6333 (2)0.9202 (5)0.6675 (3)0.0394 (8)
H16A0.67790.84640.71500.047*
H16B0.58260.85490.63200.047*
C170.65289 (19)0.9846 (5)0.5803 (2)0.0365 (7)
H170.62111.07230.53720.044*
C180.71206 (18)0.9253 (4)0.5608 (2)0.0320 (7)
H180.75090.85370.61240.038*
O70.58905 (17)1.0465 (9)−0.0084 (2)0.104 (2)
H7X0.6347 (15)1.031 (7)−0.011 (3)0.065 (14)*
H7Y0.5433 (15)1.057 (9)−0.067 (3)0.084 (17)*
U11U22U33U12U13U23
O10.0283 (10)0.0658 (18)0.0285 (10)0.0009 (12)0.0143 (9)−0.0025 (13)
O20.0303 (10)0.0656 (19)0.0266 (10)0.0022 (12)0.0099 (9)0.0024 (12)
O30.0308 (11)0.105 (3)0.0311 (11)0.0088 (14)0.0150 (10)−0.0045 (14)
O40.0271 (9)0.0652 (16)0.0222 (10)0.0050 (12)0.0088 (8)−0.0037 (12)
O50.0505 (15)0.096 (3)0.0577 (16)0.0275 (17)0.0372 (14)0.0453 (18)
O60.0403 (13)0.0473 (14)0.0316 (11)0.0104 (11)0.0172 (11)0.0001 (11)
C10.0296 (13)0.0349 (18)0.0239 (12)0.0002 (13)0.0108 (11)−0.0028 (13)
C20.0337 (14)0.0363 (17)0.0280 (13)−0.0036 (15)0.0156 (12)−0.0052 (15)
C30.0355 (15)0.0392 (18)0.0258 (12)0.0005 (14)0.0170 (12)−0.0004 (13)
C40.0308 (14)0.0371 (18)0.0265 (13)0.0024 (14)0.0102 (12)−0.0022 (13)
C50.0271 (13)0.0457 (18)0.0303 (14)0.0007 (14)0.0147 (12)−0.0017 (15)
C60.0328 (14)0.0345 (17)0.0261 (13)0.0015 (13)0.0150 (12)−0.0022 (12)
C70.0297 (14)0.048 (2)0.0275 (14)0.0016 (14)0.0139 (12)−0.0025 (14)
C80.0240 (13)0.057 (2)0.0248 (13)0.0109 (15)0.0072 (12)0.0000 (15)
C90.0408 (19)0.071 (3)0.047 (2)−0.0069 (19)0.0238 (18)−0.013 (2)
C100.0356 (16)0.053 (2)0.0302 (15)0.0129 (16)0.0139 (13)0.0081 (15)
C110.0377 (16)0.045 (2)0.0397 (16)0.0036 (15)0.0230 (15)0.0020 (15)
C120.0326 (14)0.045 (2)0.0354 (15)0.0080 (15)0.0141 (13)0.0100 (15)
C130.0317 (15)0.054 (2)0.0304 (15)0.0018 (15)0.0182 (14)0.0059 (14)
C140.0310 (14)0.0415 (18)0.0287 (14)0.0015 (13)0.0187 (13)0.0002 (13)
C150.0379 (16)0.053 (2)0.0370 (16)−0.0036 (16)0.0234 (15)−0.0040 (16)
C160.0408 (17)0.0452 (19)0.0349 (16)−0.0130 (16)0.0202 (15)−0.0087 (15)
C170.0375 (15)0.0431 (18)0.0295 (14)−0.0029 (15)0.0165 (13)−0.0035 (15)
C180.0291 (14)0.0382 (17)0.0247 (14)−0.0044 (13)0.0096 (12)−0.0011 (12)
O70.0298 (13)0.252 (6)0.0303 (13)0.005 (3)0.0133 (12)0.005 (3)
O1—C21.356 (4)C9—H9C0.9599
O1—H10.8200C10—C111.526 (5)
O2—C41.349 (4)C10—H10A0.9700
O2—H20.8200C10—H10B0.9700
O3—C71.220 (4)C11—C121.532 (5)
O4—C71.327 (4)C11—H11A0.9700
O4—C81.474 (3)C11—H11B0.9700
O5—C131.429 (4)C12—C131.518 (5)
O5—H50.8200C12—H12A0.9700
O6—C141.443 (4)C12—H12B0.9700
O6—H60.8200C13—C141.527 (4)
C1—C61.424 (4)C13—H130.9800
C1—C21.426 (4)C14—C151.528 (5)
C1—C71.470 (4)C14—H140.9800
C2—C31.377 (4)C15—C161.526 (5)
C3—C41.384 (4)C15—H15A0.9700
C3—H30.9300C15—H15B0.9700
C4—C51.400 (4)C16—C171.507 (4)
C5—C61.383 (4)C16—H16A0.9700
C5—H5A0.9300C16—H16B0.9700
C6—C181.497 (4)C17—C181.321 (5)
C8—C91.492 (6)C17—H170.9300
C8—C101.514 (5)C18—H180.9300
C8—H80.9800O7—H7X0.857 (18)
C9—H9A0.9599O7—H7Y0.844 (18)
C9—H9B0.9599
C2—O1—H1109.5C10—C11—C12110.7 (3)
C4—O2—H2109.5C10—C11—H11A109.5
C7—O4—C8118.3 (2)C12—C11—H11A109.5
C13—O5—H5109.5C10—C11—H11B109.5
C14—O6—H6109.5C12—C11—H11B109.5
C6—C1—C2118.0 (3)H11A—C11—H11B108.1
C6—C1—C7125.7 (3)C13—C12—C11114.7 (3)
C2—C1—C7116.3 (3)C13—C12—H12A108.6
O1—C2—C3116.2 (2)C11—C12—H12A108.6
O1—C2—C1122.4 (3)C13—C12—H12B108.6
C3—C2—C1121.4 (3)C11—C12—H12B108.6
C2—C3—C4119.8 (3)H12A—C12—H12B107.6
C2—C3—H3120.1O5—C13—C12110.6 (3)
C4—C3—H3120.1O5—C13—C14108.5 (2)
O2—C4—C3121.9 (3)C12—C13—C14115.3 (3)
O2—C4—C5117.9 (3)O5—C13—H13107.4
C3—C4—C5120.1 (3)C12—C13—H13107.4
C6—C5—C4121.3 (3)C14—C13—H13107.4
C6—C5—H5A119.3O6—C14—C13106.2 (2)
C4—C5—H5A119.3O6—C14—C15109.1 (3)
C5—C6—C1119.3 (3)C13—C14—C15117.9 (3)
C5—C6—C18117.1 (3)O6—C14—H14107.8
C1—C6—C18123.2 (3)C13—C14—H14107.8
O3—C7—O4122.2 (3)C15—C14—H14107.8
O3—C7—C1124.0 (3)C16—C15—C14118.3 (3)
O4—C7—C1113.9 (2)C16—C15—H15A107.7
O4—C8—C9110.0 (3)C14—C15—H15A107.7
O4—C8—C10103.8 (2)C16—C15—H15B107.7
C9—C8—C10116.0 (3)C14—C15—H15B107.7
O4—C8—H8108.9H15A—C15—H15B107.1
C9—C8—H8108.9C17—C16—C15116.3 (3)
C10—C8—H8108.9C17—C16—H16A108.2
C8—C9—H9A109.5C15—C16—H16A108.2
C8—C9—H9B109.5C17—C16—H16B108.2
H9A—C9—H9B109.5C15—C16—H16B108.2
C8—C9—H9C109.5H16A—C16—H16B107.4
H9A—C9—H9C109.5C18—C17—C16124.6 (3)
H9B—C9—H9C109.5C18—C17—H17117.7
C8—C10—C11114.6 (3)C16—C17—H17117.7
C8—C10—H10A108.6C17—C18—C6124.7 (3)
C11—C10—H10A108.6C17—C18—H18117.6
C8—C10—H10B108.6C6—C18—H18117.6
C11—C10—H10B108.6H7X—O7—H7Y121 (3)
H10A—C10—H10B107.6
C6—C1—C2—O1−178.2 (3)C2—C1—C7—O4161.9 (3)
C7—C1—C2—O12.4 (5)C7—O4—C8—C984.2 (4)
C6—C1—C2—C32.7 (5)C7—O4—C8—C10−151.0 (3)
C7—C1—C2—C3−176.7 (3)O4—C8—C10—C11−61.1 (4)
O1—C2—C3—C4177.3 (3)C9—C8—C10—C1159.7 (4)
C1—C2—C3—C4−3.6 (5)C8—C10—C11—C12157.2 (3)
C2—C3—C4—O2−175.3 (3)C10—C11—C12—C13−179.1 (3)
C2—C3—C4—C52.6 (5)C11—C12—C13—O5−173.0 (3)
O2—C4—C5—C6177.2 (3)C11—C12—C13—C1463.5 (4)
C3—C4—C5—C6−0.8 (6)O5—C13—C14—O674.9 (4)
C4—C5—C6—C1−0.1 (6)C12—C13—C14—O6−160.5 (3)
C4—C5—C6—C18−173.1 (3)O5—C13—C14—C15−47.6 (4)
C2—C1—C6—C5−0.9 (5)C12—C13—C14—C1577.0 (4)
C7—C1—C6—C5178.5 (3)O6—C14—C15—C16162.4 (3)
C2—C1—C6—C18171.7 (3)C13—C14—C15—C16−76.5 (4)
C7—C1—C6—C18−8.9 (5)C14—C15—C16—C17−63.5 (4)
C8—O4—C7—O3−2.6 (6)C15—C16—C17—C18133.7 (4)
C8—O4—C7—C1178.6 (3)C16—C17—C18—C6167.4 (3)
C6—C1—C7—O3163.7 (4)C5—C6—C18—C17−37.0 (5)
C2—C1—C7—O3−16.9 (5)C1—C6—C18—C17150.3 (4)
C6—C1—C7—O4−17.5 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1···O30.821.852.560 (4)144.
O2—H2···O70.821.792.608 (4)172.
C3—H3···O70.932.773.398 (4)125.
C9—H9B···O30.962.733.198 (5)111.
O1—H1···O3i0.822.463.003 (4)125.
O7—H7Y···O2ii0.84 (2)2.01 (3)2.798 (4)156 (6)
O5—H5···O6iii0.822.022.821 (4)166.
O6—H6···O1iv0.822.132.871 (4)149.
C3—H3···O6v0.932.883.398 (4)116.
C10—H10B···O2v0.972.523.346 (6)144.
O7—H7X···O5vi0.86 (2)1.82 (2)2.674 (4)176 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O30.821.852.560 (4)144
O2—H2⋯O70.821.792.608 (4)172
C3—H3⋯O70.932.773.398 (4)125
C9—H9B⋯O30.962.733.198 (5)111
O1—H1⋯O3i0.822.463.003 (4)125
O7—H7Y⋯O2ii0.844 (18)2.01 (3)2.798 (4)156 (6)
O5—H5⋯O6iii0.822.022.821 (4)166
O6—H6⋯O1iv0.822.132.871 (4)149
C3—H3⋯O6v0.932.883.398 (4)116
C10—H10B⋯O2v0.972.523.346 (6)144
O7—H7X⋯O5vi0.857 (18)1.818 (19)2.674 (4)176 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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Authors:  Abdellah Zinedine; Jose Miguel Soriano; Juan Carlos Moltó; Jordi Mañes
Journal:  Food Chem Toxicol       Date:  2006-08-30       Impact factor: 6.023

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Authors:  Robert Köppen; Juliane Riedel; Franziska Emmerling; Matthias Koch
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Authors:  Sarah Drzymala; Werner Kraus; Franziska Emmerling; Matthias Koch
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-28

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