Literature DB >> 21202700

(±)-5-Ethyl-2-(4-isopropyl-4-methyl-5-oxo-4,5-dihydro-1H-imidazol-2-yl)nicotinic acid.

Wei Dai1, Da-Wei Fu.   

Abstract

In the title compound, C(15)H(19)N(3)O(3), owing to an intra-molecular O-H⋯N hydrogen bond, the pyridine and imidazole rings are nearly coplanar and are twisted from each other by a dihedral angle of only 0.92 (9)°. The mol-ecules are linked through inter-molecular N-H⋯O hydrogen bonding, forming an infinite chain parallel to the b axis.

Entities:  

Year:  2008        PMID: 21202700      PMCID: PMC2961475          DOI: 10.1107/S1600536808007411

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For usages of nicotinic acid and n class="Chemical">imidazole in coordination chemistry and medicinal chemistry, see: Liu et al. (2005 ▶); Zhao et al. (2007 ▶); He et al. (2005 ▶); Boovanahalli et al. (2007 ▶); Song et al. (2006 ▶).

Experimental

Crystal data

C15H19N3O3 M = 289.33 Monoclinic, a = 12.6916 (15) Å b = 16.0748 (17) Å c = 7.3801 (8) Å β = 100.213 (7)° V = 1481.8 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 (2) K 0.25 × 0.25 × 0.20 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.978, T max = 0.988 15016 measured reflections 3357 independent reflections 2413 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.136 S = 1.03 3357 reflections 195 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808007411/dn2325sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808007411/dn2325Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H19N3O3F000 = 616
Mr = 289.33Dx = 1.297 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2685 reflections
a = 12.6916 (15) Åθ = 3.0–27.5º
b = 16.0748 (17) ŵ = 0.09 mm1
c = 7.3801 (8) ÅT = 293 (2) K
β = 100.213 (7)ºBlock, colorless
V = 1481.8 (3) Å30.25 × 0.25 × 0.20 mm
Z = 4
Rigaku Mercury2 (2x2 bin mode) diffractometer3357 independent reflections
Radiation source: fine-focus sealed tube2413 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.045
Detector resolution: 13.6612 pixels mm-1θmax = 27.4º
T = 293(2) Kθmin = 3.0º
ω scansh = −16→16
Absorption correction: Multi-scan(CrystalClear; Rigaku, 2005)k = −20→20
Tmin = 0.978, Tmax = 0.988l = −9→9
15016 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H-atom parameters constrained
wR(F2) = 0.136  w = 1/[σ2(Fo2) + (0.0611P)2 + 0.3777P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3357 reflectionsΔρmax = 0.20 e Å3
195 parametersΔρmin = −0.20 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.56210 (12)0.92867 (8)0.3216 (2)0.0442 (4)
N20.31126 (10)0.86524 (8)0.06785 (19)0.0358 (3)
N30.38168 (11)0.99041 (8)0.1425 (2)0.0419 (4)
H30.42931.02590.19010.050*
O10.36104 (10)0.71477 (7)0.09236 (19)0.0484 (4)
H10.34500.76420.08170.073*
O20.48765 (11)0.63866 (7)0.2486 (2)0.0590 (4)
O30.24362 (11)1.07812 (8)0.0169 (2)0.0626 (4)
C10.65661 (14)0.90689 (11)0.4182 (3)0.0465 (5)
H1A0.70230.94910.47020.056*
C20.69167 (13)0.82543 (11)0.4465 (2)0.0385 (4)
C30.62079 (13)0.76450 (10)0.3712 (2)0.0354 (4)
H3A0.64090.70900.38830.042*
C40.51990 (12)0.78314 (9)0.2704 (2)0.0304 (3)
C50.49432 (12)0.86849 (9)0.2486 (2)0.0328 (4)
C60.39348 (13)0.90513 (9)0.1502 (2)0.0337 (4)
C70.80073 (15)0.80620 (13)0.5550 (3)0.0508 (5)
H7A0.81170.74650.55590.061*
H7B0.80350.82400.68130.061*
C80.89069 (16)0.84795 (14)0.4789 (3)0.0624 (6)
H8A0.88710.83210.35250.094*
H8B0.95830.83090.54920.094*
H8C0.88370.90720.48680.094*
C90.45278 (13)0.70696 (10)0.2013 (2)0.0366 (4)
C100.28196 (14)1.00956 (10)0.0468 (3)0.0429 (4)
C110.22886 (13)0.92565 (10)−0.0124 (2)0.0373 (4)
C120.12537 (15)0.91484 (12)0.0676 (3)0.0492 (5)
H120.07540.95830.01330.059*
C130.0711 (2)0.83164 (17)0.0180 (4)0.0788 (8)
H13A0.11610.78760.07570.118*
H13B0.05920.8244−0.11310.118*
H13C0.00380.83030.06020.118*
C140.1441 (2)0.92685 (19)0.2749 (3)0.0857 (9)
H14A0.07720.92240.31770.128*
H14B0.17450.98090.30500.128*
H14C0.19240.88490.33290.128*
C150.21042 (17)0.91982 (12)−0.2218 (3)0.0527 (5)
H15A0.27700.9283−0.26380.079*
H15B0.16000.9617−0.27370.079*
H15C0.18270.8658−0.25960.079*
U11U22U33U12U13U23
N10.0384 (8)0.0285 (7)0.0620 (10)−0.0038 (6)−0.0019 (7)−0.0006 (7)
N20.0334 (8)0.0269 (7)0.0458 (8)0.0002 (5)0.0031 (6)−0.0001 (6)
N30.0331 (8)0.0247 (7)0.0644 (10)−0.0015 (5)−0.0008 (7)−0.0006 (6)
O10.0437 (7)0.0250 (6)0.0718 (9)−0.0017 (5)−0.0033 (6)−0.0029 (6)
O20.0513 (8)0.0237 (6)0.0970 (11)0.0032 (5)−0.0003 (7)0.0047 (6)
O30.0492 (8)0.0285 (7)0.1029 (12)0.0087 (6)−0.0057 (8)0.0011 (7)
C10.0397 (10)0.0354 (9)0.0593 (12)−0.0075 (7)−0.0049 (8)0.0004 (8)
C20.0355 (9)0.0396 (9)0.0395 (9)−0.0003 (7)0.0046 (7)0.0054 (7)
C30.0386 (9)0.0292 (8)0.0400 (9)0.0040 (7)0.0113 (7)0.0051 (7)
C40.0324 (8)0.0261 (7)0.0344 (8)0.0009 (6)0.0105 (6)0.0024 (6)
C50.0317 (8)0.0266 (8)0.0403 (9)−0.0008 (6)0.0072 (7)0.0011 (7)
C60.0349 (9)0.0251 (8)0.0421 (9)−0.0004 (6)0.0091 (7)0.0006 (7)
C70.0420 (10)0.0496 (11)0.0555 (12)0.0018 (8)−0.0059 (9)0.0090 (9)
C80.0375 (11)0.0660 (14)0.0808 (16)0.0043 (9)0.0022 (10)−0.0005 (11)
C90.0375 (9)0.0255 (8)0.0482 (10)0.0001 (7)0.0112 (8)−0.0016 (7)
C100.0386 (10)0.0300 (9)0.0593 (11)0.0029 (7)0.0064 (8)0.0006 (8)
C110.0334 (9)0.0291 (8)0.0476 (10)0.0020 (6)0.0021 (7)0.0004 (7)
C120.0350 (10)0.0503 (11)0.0615 (12)−0.0035 (8)0.0063 (8)−0.0040 (9)
C130.0650 (15)0.0823 (18)0.0907 (19)−0.0356 (13)0.0180 (13)−0.0154 (14)
C140.0713 (17)0.122 (2)0.0717 (17)−0.0306 (15)0.0344 (13)−0.0326 (16)
C150.0595 (13)0.0493 (11)0.0468 (11)0.0068 (9)0.0029 (9)0.0032 (9)
N1—C11.329 (2)C7—H7A0.9700
N1—C51.342 (2)C7—H7B0.9700
N2—C61.282 (2)C8—H8A0.9600
N2—C111.472 (2)C8—H8B0.9600
N3—C101.370 (2)C8—H8C0.9600
N3—C61.379 (2)C10—C111.536 (2)
N3—H30.8600C11—C151.524 (3)
O1—C91.298 (2)C11—C121.543 (3)
O1—H10.8200C12—C141.518 (3)
O2—C91.2118 (19)C12—C131.519 (3)
O3—C101.209 (2)C12—H120.9800
C1—C21.387 (2)C13—H13A0.9600
C1—H1A0.9300C13—H13B0.9600
C2—C31.378 (2)C13—H13C0.9600
C2—C71.503 (2)C14—H14A0.9600
C3—C41.395 (2)C14—H14B0.9600
C3—H3A0.9300C14—H14C0.9600
C4—C51.412 (2)C15—H15A0.9600
C4—C91.527 (2)C15—H15B0.9600
C5—C61.477 (2)C15—H15C0.9600
C7—C81.515 (3)
C1—N1—C5118.60 (14)O2—C9—O1120.50 (15)
C6—N2—C11108.73 (13)O2—C9—C4118.47 (15)
C10—N3—C6109.15 (14)O1—C9—C4121.02 (13)
C10—N3—H3125.4O3—C10—N3127.14 (17)
C6—N3—H3125.4O3—C10—C11127.32 (16)
C9—O1—H1109.5N3—C10—C11105.54 (13)
N1—C1—C2124.36 (16)N2—C11—C15109.74 (14)
N1—C1—H1A117.8N2—C11—C10102.72 (13)
C2—C1—H1A117.8C15—C11—C10108.85 (15)
C3—C2—C1116.18 (15)N2—C11—C12111.34 (14)
C3—C2—C7122.83 (16)C15—C11—C12113.15 (15)
C1—C2—C7120.99 (16)C10—C11—C12110.51 (14)
C2—C3—C4122.28 (15)C14—C12—C13109.8 (2)
C2—C3—H3A118.9C14—C12—C11112.33 (16)
C4—C3—H3A118.9C13—C12—C11112.79 (17)
C3—C4—C5116.13 (14)C14—C12—H12107.2
C3—C4—C9114.27 (14)C13—C12—H12107.2
C5—C4—C9129.60 (14)C11—C12—H12107.2
N1—C5—C4122.43 (15)C12—C13—H13A109.5
N1—C5—C6110.34 (13)C12—C13—H13B109.5
C4—C5—C6127.23 (14)H13A—C13—H13B109.5
N2—C6—N3113.84 (14)C12—C13—H13C109.5
N2—C6—C5126.50 (14)H13A—C13—H13C109.5
N3—C6—C5119.66 (14)H13B—C13—H13C109.5
C2—C7—C8113.25 (16)C12—C14—H14A109.5
C2—C7—H7A108.9C12—C14—H14B109.5
C8—C7—H7A108.9H14A—C14—H14B109.5
C2—C7—H7B108.9C12—C14—H14C109.5
C8—C7—H7B108.9H14A—C14—H14C109.5
H7A—C7—H7B107.7H14B—C14—H14C109.5
C7—C8—H8A109.5C11—C15—H15A109.5
C7—C8—H8B109.5C11—C15—H15B109.5
H8A—C8—H8B109.5H15A—C15—H15B109.5
C7—C8—H8C109.5C11—C15—H15C109.5
H8A—C8—H8C109.5H15A—C15—H15C109.5
H8B—C8—H8C109.5H15B—C15—H15C109.5
D—H···AD—HH···AD···AD—H···A
O1—H1···N20.821.682.4984 (18)178
N3—H3···O2i0.862.102.9330 (19)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N20.821.682.4984 (18)178
N3—H3⋯O2i0.862.102.9330 (19)162

Symmetry code: (i) .

  4 in total

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3.  Novel 3-D framework nickel(II) complex with azide, nicotinic acid, and nicotinate(1-) as coligands: hydrothermal synthesis, structure, and magnetic properties.

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4.  Synthesis of (aryloxyacetylamino)-isonicotinic/nicotinic acid analogues as potent hypoxia-inducible factor (HIF)-1alpha inhibitors.

Authors:  Shanthaveerappa K Boovanahalli; Xuejun Jin; Yinglan Jin; Jin Hwan Kim; Nguyen Tien Dat; Young-Soo Hong; Jeong Hyung Lee; Sang-Hun Jung; Kyeong Lee; Jung Joon Lee
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  4 in total
  4 in total

1.  2-(3-Nitro-phen-yl)-4,5-diphenyl-1H-imidazol-3-ium chloride.

Authors:  Li-Jing Cui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-24

2.  2-(3-Nitro-phen-yl)-4,5-diphenyl-1H-imidazol-3-ium nitrate.

Authors:  Yi Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-24

3.  2-(4-Nitro-phen-yl)-4,5-diphenyl-1H-imidazol-3-ium chloride.

Authors:  Yi Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-06

4.  4,5-Diphenyl-2-p-tolyl-1H-imidazol-3-ium nitrate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-23
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