Literature DB >> 21202670

2-Amino-4'-bromo-2',5-dioxo-4H,5H-pyrano[3,2-c]chromene-4-spiro-3'(2'H)-1'H-indole-3-carbonitrile N,N-dimethyl-formamide solvate.

Song-Lei Zhu1.   

Abstract

In the mol-ecule of the title compound, C(20)H(10)BrN(3)O(4)·C(3)H(7)NO, the spiro pyran ring adopts a twist conformation. The indole and coumarin ring systems are each nearly planar, and are oriented at a dihedral angle of 79.29 (3)°. In the crystal structure, inter-molecular N-H⋯O, N-H⋯N, C-H⋯O and C-H⋯N hydrogen bonds link the mol-ecules.

Entities:  

Year:  2008        PMID: 21202670      PMCID: PMC2961414          DOI: 10.1107/S1600536808015626

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: da Silva et al. (2001 ▶); Joshi & Chand (1982 ▶); Abdel-Rahman et al. (2004 ▶); Zhu et al. (2007 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H10BrN3O4·C3H7NO M = 509.32 Monoclinic, a = 17.004 (3) Å b = 9.0452 (15) Å c = 14.415 (3) Å β = 108.340 (3)° V = 2104.5 (7) Å3 Z = 4 Mo Kα radiation μ = 2.00 mm−1 T = 153 (2) K 0.45 × 0.30 × 0.20 mm

Data collection

Rigaku Mercury diffractometer Absorption correction: multi-scan (Jacobson, 1998 ▶) T min = 0.434, T max = 0.670 19919 measured reflections 3847 independent reflections 3597 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.067 S = 1.09 3847 reflections 309 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.56 e Å−3 Δρmin = −0.38 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2001 ▶); cell refinement: CrystalClear; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808015626/hk2467sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808015626/hk2467Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H10BrN3O4·C3H7NOF000 = 1032
Mr = 509.32Dx = 1.607 Mg m3
Monoclinic, P21/cMelting point > 573 K
Hall symbol: -P 2 y b cMo Kα radiation λ = 0.71070 Å
a = 17.004 (3) ÅCell parameters from 7931 reflections
b = 9.0452 (15) Åθ = 3.2–25.3º
c = 14.415 (3) ŵ = 2.00 mm1
β = 108.340 (3)ºT = 153 (2) K
V = 2104.5 (7) Å3Block, colorless
Z = 40.45 × 0.30 × 0.20 mm
Rigaku Mercury diffractometer3847 independent reflections
Radiation source: fine-focus sealed tube3597 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.031
Detector resolution: 7.31 pixels mm-1θmax = 25.3º
T = 153(2) Kθmin = 3.2º
ω scansh = −17→20
Absorption correction: multi-scan(Jacobson, 1998)k = −10→9
Tmin = 0.434, Tmax = 0.670l = −17→17
19919 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.031H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.067  w = 1/[σ2(Fo2) + (0.0219P)2 + 2.2795P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.002
3847 reflectionsΔρmax = 0.56 e Å3
309 parametersΔρmin = −0.38 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.674546 (15)−0.23487 (3)0.370899 (16)0.02528 (8)
O10.72297 (9)0.17427 (16)0.38347 (10)0.0165 (3)
O20.80028 (9)0.17370 (16)0.69972 (11)0.0195 (3)
O30.54289 (9)0.16195 (17)0.51984 (11)0.0205 (3)
O40.61528 (9)0.00093 (17)0.62894 (11)0.0218 (3)
O50.86929 (11)0.5130 (2)0.42641 (12)0.0350 (4)
N10.84875 (12)0.1416 (2)0.37211 (14)0.0165 (4)
H1A0.8332 (15)0.211 (3)0.3263 (19)0.022 (7)*
H1B0.8976 (16)0.110 (3)0.3921 (17)0.018 (6)*
N20.97044 (12)−0.0393 (2)0.58997 (14)0.0245 (4)
N30.80382 (11)−0.07714 (19)0.72793 (13)0.0170 (4)
H30.8267−0.07670.79180.020*
N40.94175 (11)0.5142 (2)0.58794 (13)0.0216 (4)
C10.79982 (12)0.1140 (2)0.42627 (15)0.0135 (4)
C20.81869 (12)0.0379 (2)0.51188 (15)0.0135 (4)
C30.75548 (12)−0.0029 (2)0.56233 (15)0.0132 (4)
C40.67684 (12)0.0815 (2)0.51288 (15)0.0135 (4)
C50.66610 (13)0.1649 (2)0.43275 (15)0.0143 (4)
C60.90223 (13)−0.0065 (2)0.55498 (15)0.0159 (4)
C70.78839 (12)0.0454 (2)0.67200 (15)0.0154 (4)
C80.74743 (12)−0.1686 (2)0.57294 (15)0.0140 (4)
C90.71969 (13)−0.2801 (2)0.50567 (15)0.0166 (4)
C100.72305 (14)−0.4273 (2)0.53575 (17)0.0206 (5)
H100.7035−0.50390.48910.025*
C110.75512 (14)−0.4604 (2)0.63403 (18)0.0229 (5)
H110.7577−0.56070.65430.027*
C120.78381 (13)−0.3505 (2)0.70414 (17)0.0199 (5)
H120.8059−0.37390.77160.024*
C130.77895 (13)−0.2058 (2)0.67179 (15)0.0153 (4)
C140.61196 (13)0.0753 (2)0.55878 (15)0.0168 (5)
C150.53467 (13)0.2528 (2)0.44043 (16)0.0178 (5)
C160.46555 (14)0.3429 (3)0.41187 (18)0.0247 (5)
H160.42520.33890.44480.030*
C170.45632 (14)0.4387 (3)0.33474 (18)0.0264 (5)
H170.40970.50260.31530.032*
C180.51418 (14)0.4430 (3)0.28502 (17)0.0240 (5)
H180.50660.50870.23150.029*
C190.58252 (13)0.3522 (2)0.31330 (16)0.0195 (5)
H190.62200.35500.27910.023*
C200.59384 (13)0.2557 (2)0.39248 (15)0.0156 (4)
C210.90376 (15)0.5775 (3)0.50259 (18)0.0290 (6)
H210.90340.68250.50070.035*
C220.98163 (16)0.6027 (3)0.67431 (19)0.0330 (6)
H22A0.97250.70790.65810.050*
H22B1.04120.58210.69680.050*
H22C0.95800.57770.72620.050*
C230.94561 (18)0.3560 (3)0.6002 (2)0.0376 (7)
H23A0.90970.32570.63820.056*
H23B1.00280.32640.63470.056*
H23C0.92700.30820.53590.056*
U11U22U33U12U13U23
Br10.03215 (15)0.02519 (14)0.01580 (13)−0.00378 (10)0.00365 (10)−0.00394 (9)
O10.0129 (7)0.0220 (8)0.0152 (8)0.0032 (6)0.0053 (6)0.0050 (6)
O20.0243 (8)0.0164 (8)0.0170 (8)−0.0025 (6)0.0051 (7)−0.0043 (6)
O30.0157 (8)0.0256 (9)0.0225 (8)0.0047 (6)0.0095 (7)0.0063 (7)
O40.0234 (8)0.0243 (9)0.0204 (8)0.0027 (7)0.0110 (7)0.0059 (7)
O50.0318 (10)0.0512 (12)0.0194 (9)0.0038 (9)0.0042 (8)−0.0030 (8)
N10.0130 (10)0.0197 (10)0.0172 (10)0.0038 (8)0.0051 (8)0.0054 (8)
N20.0193 (11)0.0316 (12)0.0235 (10)0.0053 (9)0.0079 (9)0.0070 (9)
N30.0199 (10)0.0187 (10)0.0105 (9)0.0003 (8)0.0022 (7)0.0023 (7)
N40.0205 (10)0.0256 (11)0.0180 (10)−0.0003 (8)0.0051 (8)0.0019 (8)
C10.0119 (10)0.0122 (10)0.0160 (10)−0.0005 (8)0.0037 (8)−0.0037 (8)
C20.0129 (10)0.0137 (11)0.0139 (10)0.0000 (8)0.0043 (8)−0.0003 (8)
C30.0137 (10)0.0142 (11)0.0119 (10)−0.0009 (8)0.0045 (8)−0.0006 (8)
C40.0131 (10)0.0135 (10)0.0133 (10)−0.0008 (8)0.0034 (8)−0.0025 (8)
C50.0141 (10)0.0153 (11)0.0143 (10)−0.0015 (8)0.0055 (8)−0.0040 (8)
C60.0216 (12)0.0145 (11)0.0140 (11)−0.0012 (9)0.0089 (9)0.0020 (8)
C70.0122 (10)0.0194 (12)0.0151 (11)0.0003 (8)0.0051 (9)0.0014 (9)
C80.0121 (10)0.0137 (11)0.0179 (11)0.0012 (8)0.0070 (9)0.0016 (8)
C90.0137 (10)0.0213 (11)0.0158 (11)0.0000 (9)0.0063 (9)−0.0006 (9)
C100.0195 (11)0.0158 (11)0.0290 (13)−0.0023 (9)0.0112 (10)−0.0042 (9)
C110.0224 (12)0.0145 (11)0.0356 (14)0.0031 (9)0.0146 (11)0.0060 (10)
C120.0191 (11)0.0201 (12)0.0222 (12)0.0030 (9)0.0090 (10)0.0061 (9)
C130.0133 (10)0.0172 (11)0.0167 (11)0.0013 (8)0.0064 (9)0.0009 (9)
C140.0161 (11)0.0160 (11)0.0172 (11)0.0000 (9)0.0036 (9)−0.0026 (9)
C150.0163 (11)0.0187 (11)0.0175 (11)−0.0012 (9)0.0042 (9)0.0002 (9)
C160.0181 (12)0.0276 (13)0.0312 (13)0.0031 (10)0.0117 (10)0.0008 (10)
C170.0180 (12)0.0272 (13)0.0313 (13)0.0085 (10)0.0041 (10)0.0050 (10)
C180.0186 (12)0.0263 (13)0.0237 (12)0.0025 (10)0.0016 (10)0.0071 (10)
C190.0179 (11)0.0212 (12)0.0182 (11)0.0009 (9)0.0040 (9)0.0015 (9)
C200.0131 (10)0.0158 (11)0.0159 (11)−0.0019 (8)0.0018 (9)−0.0014 (8)
C210.0244 (13)0.0374 (15)0.0263 (14)0.0049 (11)0.0097 (11)0.0008 (11)
C220.0299 (14)0.0340 (15)0.0299 (14)0.0011 (11)0.0017 (11)−0.0052 (11)
C230.0446 (17)0.0293 (15)0.0357 (15)−0.0074 (12)0.0078 (13)0.0020 (12)
Br1—C91.895 (2)C8—C91.376 (3)
O1—C11.370 (2)C8—C131.396 (3)
O1—C51.371 (2)C9—C101.395 (3)
O2—C71.223 (3)C10—C111.381 (3)
O3—C141.376 (3)C10—H100.9500
O3—C151.380 (3)C11—C121.392 (3)
O4—C141.201 (3)C11—H110.9500
O5—C211.219 (3)C12—C131.383 (3)
N1—C11.331 (3)C12—H120.9500
N1—H1A0.89 (3)C15—C161.382 (3)
N1—H1B0.84 (3)C15—C201.389 (3)
N2—C61.149 (3)C16—C171.379 (3)
N3—C71.347 (3)C16—H160.9500
N3—C131.404 (3)C17—C181.388 (3)
N3—H30.8800C17—H170.9500
N4—C211.326 (3)C18—C191.376 (3)
N4—C231.441 (3)C18—H180.9500
N4—C221.456 (3)C19—C201.401 (3)
C1—C21.360 (3)C19—H190.9500
C2—C61.418 (3)C21—H210.9500
C2—C31.521 (3)C22—H22A0.9800
C3—C41.509 (3)C22—H22B0.9800
C3—C81.517 (3)C22—H22C0.9800
C3—C71.564 (3)C23—H23A0.9800
C4—C51.343 (3)C23—H23B0.9800
C4—C141.455 (3)C23—H23C0.9800
C5—C201.440 (3)
C1—O1—C5118.06 (16)C12—C11—H11119.2
C14—O3—C15121.88 (16)C13—C12—C11117.5 (2)
C1—N1—H1A118.2 (16)C13—C12—H12121.3
C1—N1—H1B118.0 (16)C11—C12—H12121.3
H1A—N1—H1B122 (2)C12—C13—C8122.3 (2)
C7—N3—C13111.74 (17)C12—C13—N3127.9 (2)
C7—N3—H3124.1C8—C13—N3109.74 (18)
C13—N3—H3124.1O4—C14—O3118.06 (19)
C21—N4—C23122.2 (2)O4—C14—C4124.3 (2)
C21—N4—C22121.1 (2)O3—C14—C4117.68 (18)
C23—N4—C22116.8 (2)O3—C15—C16116.93 (19)
N1—C1—C2127.9 (2)O3—C15—C20121.61 (19)
N1—C1—O1110.17 (18)C16—C15—C20121.4 (2)
C2—C1—O1121.94 (18)C17—C16—C15118.8 (2)
C1—C2—C6117.31 (18)C17—C16—H16120.6
C1—C2—C3123.80 (18)C15—C16—H16120.6
C6—C2—C3118.89 (18)C16—C17—C18121.0 (2)
C4—C3—C8116.89 (17)C16—C17—H17119.5
C4—C3—C2107.82 (17)C18—C17—H17119.5
C8—C3—C2112.82 (17)C19—C18—C17120.0 (2)
C4—C3—C7108.55 (16)C19—C18—H18120.0
C8—C3—C7100.89 (16)C17—C18—H18120.0
C2—C3—C7109.49 (16)C18—C19—C20120.0 (2)
C5—C4—C14119.68 (19)C18—C19—H19120.0
C5—C4—C3123.41 (18)C20—C19—H19120.0
C14—C4—C3116.85 (18)C15—C20—C19118.8 (2)
C4—C5—O1123.57 (19)C15—C20—C5116.64 (19)
C4—C5—C20122.36 (19)C19—C20—C5124.40 (19)
O1—C5—C20114.06 (18)O5—C21—N4125.8 (3)
N2—C6—C2178.5 (2)O5—C21—H21117.1
O2—C7—N3127.16 (19)N4—C21—H21117.1
O2—C7—C3124.40 (19)N4—C22—H22A109.5
N3—C7—C3108.38 (17)N4—C22—H22B109.5
C9—C8—C13118.63 (19)H22A—C22—H22B109.5
C9—C8—C3132.46 (19)N4—C22—H22C109.5
C13—C8—C3108.84 (18)H22A—C22—H22C109.5
C8—C9—C10120.6 (2)H22B—C22—H22C109.5
C8—C9—Br1120.17 (16)N4—C23—H23A109.5
C10—C9—Br1119.23 (16)N4—C23—H23B109.5
C11—C10—C9119.3 (2)H23A—C23—H23B109.5
C11—C10—H10120.3N4—C23—H23C109.5
C9—C10—H10120.3H23A—C23—H23C109.5
C10—C11—C12121.7 (2)H23B—C23—H23C109.5
C10—C11—H11119.2
C5—O1—C1—N1−175.77 (17)C13—C8—C9—Br1178.87 (15)
C5—O1—C1—C24.4 (3)C3—C8—C9—Br1−4.6 (3)
N1—C1—C2—C66.6 (3)C8—C9—C10—C11−0.4 (3)
O1—C1—C2—C6−173.60 (18)Br1—C9—C10—C11−179.33 (16)
N1—C1—C2—C3−172.6 (2)C9—C10—C11—C120.4 (3)
O1—C1—C2—C37.1 (3)C10—C11—C12—C130.1 (3)
C1—C2—C3—C4−11.5 (3)C11—C12—C13—C8−0.6 (3)
C6—C2—C3—C4169.26 (18)C11—C12—C13—N3−179.9 (2)
C1—C2—C3—C8119.1 (2)C9—C8—C13—C120.5 (3)
C6—C2—C3—C8−60.1 (2)C3—C8—C13—C12−176.78 (19)
C1—C2—C3—C7−129.4 (2)C9—C8—C13—N3179.94 (18)
C6—C2—C3—C751.3 (2)C3—C8—C13—N32.6 (2)
C8—C3—C4—C5−122.6 (2)C7—N3—C13—C12−178.8 (2)
C2—C3—C4—C55.7 (3)C7—N3—C13—C81.8 (2)
C7—C3—C4—C5124.3 (2)C15—O3—C14—O4178.80 (19)
C8—C3—C4—C1460.4 (2)C15—O3—C14—C4−0.4 (3)
C2—C3—C4—C14−171.33 (17)C5—C4—C14—O4178.0 (2)
C7—C3—C4—C14−52.8 (2)C3—C4—C14—O4−4.8 (3)
C14—C4—C5—O1−178.31 (18)C5—C4—C14—O3−2.9 (3)
C3—C4—C5—O14.7 (3)C3—C4—C14—O3174.33 (17)
C14—C4—C5—C203.2 (3)C14—O3—C15—C16−175.4 (2)
C3—C4—C5—C20−173.79 (19)C14—O3—C15—C203.4 (3)
C1—O1—C5—C4−10.4 (3)O3—C15—C16—C17178.0 (2)
C1—O1—C5—C20168.17 (17)C20—C15—C16—C17−0.8 (3)
C13—N3—C7—O2177.2 (2)C15—C16—C17—C181.3 (4)
C13—N3—C7—C3−5.3 (2)C16—C17—C18—C19−0.8 (4)
C4—C3—C7—O2−52.7 (3)C17—C18—C19—C20−0.2 (3)
C8—C3—C7—O2−176.1 (2)O3—C15—C20—C19−178.96 (19)
C2—C3—C7—O264.8 (3)C16—C15—C20—C19−0.2 (3)
C4—C3—C7—N3129.72 (18)O3—C15—C20—C5−3.0 (3)
C8—C3—C7—N36.3 (2)C16—C15—C20—C5175.7 (2)
C2—C3—C7—N3−112.82 (19)C18—C19—C20—C150.7 (3)
C4—C3—C8—C960.5 (3)C18—C19—C20—C5−174.9 (2)
C2—C3—C8—C9−65.3 (3)C4—C5—C20—C15−0.3 (3)
C7—C3—C8—C9177.9 (2)O1—C5—C20—C15−178.91 (18)
C4—C3—C8—C13−122.70 (19)C4—C5—C20—C19175.4 (2)
C2—C3—C8—C13111.45 (19)O1—C5—C20—C19−3.2 (3)
C7—C3—C8—C13−5.3 (2)C23—N4—C21—O5−0.7 (4)
C13—C8—C9—C100.0 (3)C22—N4—C21—O5179.4 (2)
C3—C8—C9—C10176.5 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.89 (3)2.02 (3)2.891 (2)165 (2)
N1—H1B···N2ii0.84 (3)2.27 (3)3.090 (3)166 (2)
N3—H3···O5iii0.881.932.785 (2)163
C11—H11···O2iv0.952.543.462 (3)165
C19—H19···O4i0.952.503.173 (3)128
C22—H22A···N2v0.982.483.443 (3)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.89 (3)2.02 (3)2.891 (2)165 (2)
N1—H1B⋯N2ii0.84 (3)2.27 (3)3.090 (3)166 (2)
N3—H3⋯O5iii0.881.932.785 (2)163
C11—H11⋯O2iv0.952.543.462 (3)165
C19—H19⋯O4i0.952.503.173 (3)128
C22—H22A⋯N2v0.982.483.443 (3)166

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Biologically active indole derivatives.

Authors:  K C Joshi; P Chand
Journal:  Pharmazie       Date:  1982-01       Impact factor: 1.267

3.  Synthesis and evaluation of some new spiro indoline-based heterocycles as potentially active antimicrobial agents.

Authors:  A H Abdel-Rahman; E M Keshk; M A Hanna; Sh M el-Bady
Journal:  Bioorg Med Chem       Date:  2004-05-01       Impact factor: 3.641

  3 in total
  1 in total

1.  4-Bromo-3-hy-droxy-3-(4-hy-droxy-2-oxo-2H-chromen-3-yl)indolin-2-one.

Authors:  Song-Lei Zhu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08
  1 in total

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