Literature DB >> 21202599

Ethyl 5-acetyl-2-amino-4-methyl-thio-phene-3-carboxyl-ate.

Mehmet Akkurt, Sema Öztürk Yıldırım, Abdullah Mohamed Asiri, Vickie McKee.   

Abstract

In the title compound, C(10)H(13)NO(3)S, prepared in a one-pot reaction, the mol-ecular conformation is stabilized by an intra-molecular N-H⋯O hydrogen bond. The packing is consolidated by further N-H⋯O links. The H atoms of two of the methyl groups are disordered over two sets of sites with equal occupancies.

Entities:  

Year:  2008        PMID: 21202599      PMCID: PMC2961554          DOI: 10.1107/S1600536808014177

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Gewald et al. (1966 ▶); Sabnis et al. (1999 ▶); Akkurt et al. (2008 ▶); Allen et al. (1987 ▶).

Experimental

Crystal data

C10H13NO3S M = 227.28 Monoclinic, a = 7.5397 (3) Å b = 8.4514 (3) Å c = 16.7058 (6) Å β = 94.465 (1)° V = 1061.28 (7) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 150 (2) K 0.29 × 0.26 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.920, T max = 0.971 12338 measured reflections 3400 independent reflections 2944 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.111 S = 1.05 3400 reflections 136 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808014177/hb2733sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808014177/hb2733Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H13NO3SF(000) = 480
Mr = 227.28Dx = 1.423 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4913 reflections
a = 7.5397 (3) Åθ = 2.5–31.1°
b = 8.4514 (3) ŵ = 0.29 mm1
c = 16.7058 (6) ÅT = 150 K
β = 94.465 (1)°Block, orange
V = 1061.28 (7) Å30.29 × 0.26 × 0.10 mm
Z = 4
Bruker APEXII CCD diffractometer3400 independent reflections
Radiation source: sealed tube2944 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 31.8°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −11→10
Tmin = 0.920, Tmax = 0.971k = −12→12
12338 measured reflectionsl = −23→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.06P)2 + 0.3751P] where P = (Fo2 + 2Fc2)/3
3400 reflections(Δ/σ)max = 0.001
136 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.74240 (4)0.44716 (4)0.82882 (2)0.0234 (1)
O10.58575 (14)0.74136 (13)0.79734 (6)0.0324 (3)
O20.94110 (15)0.13922 (12)1.03979 (6)0.0315 (3)
O30.83808 (13)0.32842 (11)1.11776 (5)0.0251 (3)
N10.88307 (16)0.17090 (13)0.87660 (6)0.0263 (3)
C10.5682 (2)0.86338 (17)0.92406 (8)0.0307 (4)
C20.61541 (17)0.72854 (15)0.87090 (7)0.0240 (3)
C30.69568 (16)0.58332 (15)0.90307 (7)0.0210 (3)
C40.74019 (15)0.52653 (14)0.97964 (7)0.0191 (3)
C50.71928 (18)0.61996 (15)1.05495 (7)0.0249 (3)
C60.81050 (15)0.36847 (14)0.97838 (7)0.0194 (3)
C70.82188 (16)0.31123 (14)0.89967 (7)0.0208 (3)
C80.87045 (16)0.26784 (14)1.04635 (7)0.0207 (3)
C90.90152 (19)0.23865 (16)1.18821 (7)0.0272 (3)
C100.8610 (2)0.33700 (19)1.25956 (8)0.0325 (4)
HN1A0.921900.102900.912000.0320*
H1A0.517300.948000.891600.0460*0.500
H1B0.673600.900400.954300.0460*0.500
H1C0.483700.827800.960200.0460*0.500
H1D0.599100.836100.979200.0460*0.500
H1E0.442800.883800.916400.0460*0.500
H1F0.632600.956300.910500.0460*0.500
HN1B0.883500.148900.826400.0320*
H5A0.758000.557101.100900.0370*0.500
H5B0.596500.648001.057700.0370*0.500
H5C0.789900.714401.054300.0370*0.500
H5D0.671600.722501.041000.0370*0.500
H5E0.833200.631701.084300.0370*0.500
H5F0.639700.565301.087600.0370*0.500
H9A1.028500.219901.188300.0330*
H9B0.841200.137401.189200.0330*
H10A0.900500.282201.308000.0490*
H10B0.735100.354901.258500.0490*
H10C0.921500.436701.257700.0490*
U11U22U33U12U13U23
S10.0306 (2)0.0254 (2)0.0142 (1)−0.0032 (1)0.0017 (1)−0.0009 (1)
O10.0409 (6)0.0366 (5)0.0198 (4)0.0027 (4)0.0031 (4)0.0076 (4)
O20.0468 (6)0.0238 (4)0.0241 (5)0.0083 (4)0.0037 (4)−0.0003 (3)
O30.0348 (5)0.0258 (4)0.0147 (4)0.0055 (4)0.0015 (3)0.0012 (3)
N10.0373 (6)0.0222 (5)0.0197 (5)−0.0009 (4)0.0038 (4)−0.0052 (4)
C10.0386 (7)0.0263 (6)0.0271 (6)0.0064 (5)0.0016 (5)0.0038 (5)
C20.0248 (5)0.0262 (6)0.0212 (5)−0.0031 (4)0.0027 (4)0.0040 (4)
C30.0245 (5)0.0224 (5)0.0163 (5)−0.0032 (4)0.0023 (4)−0.0006 (4)
C40.0200 (5)0.0211 (5)0.0164 (5)−0.0030 (4)0.0022 (4)−0.0010 (4)
C50.0327 (6)0.0246 (6)0.0174 (5)0.0024 (5)0.0017 (4)−0.0026 (4)
C60.0216 (5)0.0206 (5)0.0161 (5)−0.0026 (4)0.0018 (4)−0.0013 (4)
C70.0228 (5)0.0217 (5)0.0180 (5)−0.0045 (4)0.0024 (4)−0.0017 (4)
C80.0234 (5)0.0215 (5)0.0173 (5)−0.0025 (4)0.0019 (4)−0.0008 (4)
C90.0360 (7)0.0270 (6)0.0185 (5)0.0027 (5)0.0010 (5)0.0057 (4)
C100.0407 (7)0.0392 (7)0.0179 (5)0.0024 (6)0.0044 (5)0.0023 (5)
S1—C31.7479 (13)C1—H1A0.9600
S1—C71.7232 (12)C1—H1B0.9600
O1—C21.2366 (15)C1—H1C0.9600
O2—C81.2192 (16)C1—H1D0.9600
O3—C81.3380 (15)C1—H1E0.9600
O3—C91.4498 (15)C1—H1F0.9600
N1—C71.3400 (16)C5—H5A0.9600
N1—HN1A0.8600C5—H5B0.9600
N1—HN1B0.8600C5—H5C0.9600
C1—C21.5044 (19)C5—H5D0.9600
C2—C31.4529 (18)C5—H5E0.9600
C3—C41.3829 (17)C5—H5F0.9600
C4—C61.4379 (17)C9—H9A0.9700
C4—C51.5040 (17)C9—H9B0.9700
C6—C71.4100 (17)C10—H10A0.9600
C6—C81.4619 (17)C10—H10B0.9600
C9—C101.5039 (19)C10—H10C0.9600
C3—S1—C791.72 (6)H1C—C1—H1D56.00
C8—O3—C9116.87 (10)H1C—C1—H1E56.00
HN1A—N1—HN1B120.00H1C—C1—H1F141.00
C7—N1—HN1A120.00H1D—C1—H1E110.00
C7—N1—HN1B120.00H1D—C1—H1F109.00
O1—C2—C1119.18 (12)H1E—C1—H1F109.00
O1—C2—C3118.66 (11)C4—C5—H5A109.00
C1—C2—C3122.17 (11)C4—C5—H5B110.00
S1—C3—C2113.26 (9)C4—C5—H5C109.00
C2—C3—C4134.38 (11)C4—C5—H5D109.00
S1—C3—C4112.34 (9)C4—C5—H5E109.00
C5—C4—C6124.25 (10)C4—C5—H5F109.00
C3—C4—C6111.84 (10)H5A—C5—H5B109.00
C3—C4—C5123.91 (11)H5A—C5—H5C110.00
C4—C6—C7112.44 (10)H5A—C5—H5D141.00
C4—C6—C8128.40 (11)H5A—C5—H5E56.00
C7—C6—C8119.16 (10)H5A—C5—H5F56.00
N1—C7—C6128.26 (11)H5B—C5—H5C109.00
S1—C7—N1120.11 (9)H5B—C5—H5D56.00
S1—C7—C6111.64 (9)H5B—C5—H5E141.00
O2—C8—O3122.18 (11)H5B—C5—H5F56.00
O2—C8—C6124.04 (11)H5C—C5—H5D56.00
O3—C8—C6113.77 (10)H5C—C5—H5E56.00
O3—C9—C10106.24 (11)H5C—C5—H5F141.00
C2—C1—H1A109.00H5D—C5—H5E109.00
C2—C1—H1B109.00H5D—C5—H5F109.00
C2—C1—H1C109.00H5E—C5—H5F109.00
C2—C1—H1D109.00O3—C9—H9A110.00
C2—C1—H1E109.00O3—C9—H9B110.00
C2—C1—H1F109.00C10—C9—H9A111.00
H1A—C1—H1B109.00C10—C9—H9B110.00
H1A—C1—H1C109.00H9A—C9—H9B109.00
H1A—C1—H1D141.00C9—C10—H10A109.00
H1A—C1—H1E56.00C9—C10—H10B110.00
H1A—C1—H1F56.00C9—C10—H10C109.00
H1B—C1—H1C110.00H10A—C10—H10B109.00
H1B—C1—H1D56.00H10A—C10—H10C110.00
H1B—C1—H1E141.00H10B—C10—H10C109.00
H1B—C1—H1F56.00
C7—S1—C3—C2−178.44 (10)C2—C3—C4—C6177.16 (13)
C7—S1—C3—C40.21 (10)C3—C4—C6—C71.69 (15)
C3—S1—C7—N1−179.68 (11)C3—C4—C6—C8−179.30 (12)
C3—S1—C7—C60.76 (10)C5—C4—C6—C7−177.67 (11)
C9—O3—C8—O23.93 (18)C5—C4—C6—C81.35 (19)
C9—O3—C8—C6−177.14 (10)C4—C6—C7—S1−1.52 (13)
C8—O3—C9—C10175.85 (11)C4—C6—C7—N1178.96 (12)
O1—C2—C3—S11.18 (16)C8—C6—C7—S1179.36 (9)
O1—C2—C3—C4−177.07 (13)C8—C6—C7—N1−0.2 (2)
C1—C2—C3—S1−178.56 (10)C4—C6—C8—O2−174.17 (12)
C1—C2—C3—C43.2 (2)C4—C6—C8—O36.93 (18)
S1—C3—C4—C5178.25 (10)C7—C6—C8—O24.79 (19)
S1—C3—C4—C6−1.10 (13)C7—C6—C8—O3−174.12 (11)
C2—C3—C4—C5−3.5 (2)
D—H···AD—HH···AD···AD—H···A
N1—HN1A···O20.862.152.7404 (14)125
N1—HN1A···O2i0.862.403.2077 (15)156
N1—HN1B···O1ii0.862.242.9933 (14)147
C5—H5A···O30.962.042.7978 (16)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—HN1A⋯O20.862.152.7404 (14)125
N1—HN1A⋯O2i0.862.403.2077 (15)156
N1—HN1B⋯O1ii0.862.242.9933 (14)147
C5—H5A⋯O30.962.042.7978 (16)135

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Diethyl 5-[(2-hydr-oxy-1-naphth-yl)methyl-ideneamino]-3-methyl-thio-phene-2,4-dicarboxyl-ate.

Authors:  Mehmet Akkurt; Serife Pınar Yalçın; Abdullah Mohamed Asiri; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-26
  2 in total

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