Literature DB >> 21202404

Diethyl 5-[(2-hydr-oxy-1-naphth-yl)methyl-ideneamino]-3-methyl-thio-phene-2,4-dicarboxyl-ate.

Mehmet Akkurt, Serife Pınar Yalçın, Abdullah Mohamed Asiri, Orhan Büyükgüngör.   

Abstract

In the title compound, C(22)H(21)NO(5)S, the 2-naphthol group and the thio-phene ring are almost coplanar, with a dihedral angle of 5.75 (7)°. The structure is stabilized by intra-molecular O-H⋯O, O-H⋯N and C-H⋯S, and inter-molecular C-H⋯O hydrogen-bonding inter-actions.

Entities:  

Year:  2008        PMID: 21202404      PMCID: PMC2961336          DOI: 10.1107/S1600536808011628

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Akkurt, Karaca et al. (2008 ▶); Akkurt, Yıldırım et al. (2008 ▶); Asiri & Badahdah (2007 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C22H21NO5S M = 411.47 Triclinic, a = 8.7111 (4) Å b = 11.5319 (5) Å c = 11.9778 (5) Å α = 61.594 (3)° β = 79.489 (3)° γ = 89.334 (3)° V = 1036.67 (9) Å3 Z = 2 Mo Kα radiation μ = 0.19 mm−1 T = 293 (2) K 0.63 × 0.38 × 0.10 mm

Data collection

Stoe IPDS-2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie) T min = 0.890, T max = 0.981 18909 measured reflections 4047 independent reflections 3397 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.111 S = 1.06 4047 reflections 265 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.15 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011628/sj2483sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011628/sj2483Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H21NO5SZ = 2
Mr = 411.47F000 = 432
Triclinic, P1Dx = 1.318 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 8.7111 (4) ÅCell parameters from 18909 reflections
b = 11.5319 (5) Åθ = 2.0–28.0º
c = 11.9778 (5) ŵ = 0.19 mm1
α = 61.594 (3)ºT = 293 (2) K
β = 79.489 (3)ºPlate, orange
γ = 89.334 (3)º0.63 × 0.38 × 0.10 mm
V = 1036.67 (9) Å3
Stoe IPDS-2 diffractometer4047 independent reflections
Monochromator: plane graphite3397 reflections with I > 2σ(I)
Detector resolution: 6.67 pixels mm-1Rint = 0.029
T = 293(2) Kθmax = 26.0º
ω scansθmin = 2.0º
Absorption correction: integration(X-RED32; Stoe & Cie)h = −10→10
Tmin = 0.890, Tmax = 0.981k = −14→14
18909 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.111  w = 1/[σ2(Fo2) + (0.064P)2 + 0.1098P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
4047 reflectionsΔρmax = 0.29 e Å3
265 parametersΔρmin = −0.15 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.49573 (5)0.76909 (4)0.39643 (4)0.0501 (1)
O10.14230 (15)0.32467 (13)0.72848 (10)0.0600 (4)
O20.3809 (2)0.60637 (15)0.86430 (13)0.0796 (6)
O30.40230 (17)0.44308 (13)0.81405 (11)0.0629 (4)
O40.7590 (2)1.03239 (15)0.40759 (16)0.0874 (6)
O50.70559 (18)0.99593 (13)0.25144 (13)0.0721 (5)
N10.31832 (15)0.53737 (13)0.57083 (12)0.0454 (4)
C10.27937 (17)0.52740 (15)0.47657 (14)0.0433 (4)
C20.17178 (17)0.42282 (15)0.49800 (14)0.0421 (4)
C30.10639 (19)0.32652 (16)0.62436 (15)0.0488 (5)
C4−0.0033 (2)0.22477 (18)0.64652 (17)0.0576 (5)
C5−0.0463 (2)0.21932 (18)0.54624 (18)0.0576 (5)
C60.01516 (18)0.31457 (16)0.41623 (16)0.0485 (5)
C7−0.0334 (2)0.30932 (19)0.31243 (19)0.0599 (6)
C80.0266 (2)0.4000 (2)0.18768 (19)0.0648 (7)
C90.1389 (2)0.4991 (2)0.16108 (17)0.0613 (6)
C100.1874 (2)0.50831 (17)0.25911 (15)0.0517 (5)
C110.12654 (17)0.41718 (15)0.39031 (14)0.0431 (4)
C120.41757 (18)0.64162 (15)0.54888 (14)0.0440 (5)
C130.46275 (18)0.66050 (16)0.64435 (15)0.0460 (5)
C140.56177 (19)0.77890 (16)0.59411 (16)0.0491 (5)
C150.59028 (19)0.84540 (16)0.46218 (17)0.0504 (5)
C160.6309 (2)0.8209 (2)0.6770 (2)0.0646 (7)
C170.4107 (2)0.56996 (18)0.78467 (16)0.0545 (6)
C180.3541 (4)0.3472 (2)0.9500 (2)0.0952 (9)
C190.3661 (5)0.2151 (3)0.9659 (3)0.1222 (16)
C200.6929 (2)0.96689 (18)0.37492 (19)0.0595 (6)
C210.8094 (3)1.1108 (2)0.1560 (2)0.0924 (9)
C220.8308 (5)1.1111 (3)0.0332 (3)0.1284 (13)
H10.322800.590400.391900.0520*
H1A0.206500.387100.705700.0900*
H4−0.046300.161000.731000.0690*
H5−0.118200.151200.563100.0690*
H7−0.107800.242600.329900.0720*
H8−0.007200.395800.120300.0780*
H90.181600.560000.075500.0730*
H100.262000.576000.239000.0620*
H16A0.678600.748200.737200.0970*
H16B0.549500.847300.723800.0970*
H16C0.708600.894000.622900.0970*
H18A0.420600.361700.999800.1140*
H18B0.246800.357300.981700.1140*
H19A0.339700.151501.056400.1830*
H19B0.471300.206900.930800.1830*
H19C0.295100.199300.921000.1830*
H21A0.909601.107300.181500.1110*
H21B0.764401.190800.148600.1110*
H22A0.910401.17940−0.028800.1920*
H22B0.734001.127300.002800.1920*
H22C0.862101.026800.044200.1920*
U11U22U33U12U13U23
S10.0542 (2)0.0489 (2)0.0479 (2)−0.0031 (2)−0.0107 (2)−0.0236 (2)
O10.0637 (8)0.0669 (8)0.0435 (6)−0.0065 (6)−0.0077 (5)−0.0228 (5)
O20.1077 (12)0.0840 (10)0.0569 (7)−0.0006 (9)−0.0050 (7)−0.0456 (7)
O30.0824 (9)0.0577 (7)0.0464 (6)−0.0033 (6)−0.0131 (6)−0.0232 (5)
O40.1040 (12)0.0666 (9)0.0921 (11)−0.0283 (8)−0.0127 (9)−0.0402 (8)
O50.0825 (10)0.0542 (7)0.0677 (8)−0.0158 (7)−0.0004 (7)−0.0246 (6)
N10.0443 (7)0.0495 (7)0.0475 (7)0.0003 (6)−0.0099 (5)−0.0270 (6)
C10.0424 (8)0.0458 (8)0.0438 (7)0.0014 (6)−0.0079 (6)−0.0234 (6)
C20.0380 (7)0.0451 (8)0.0457 (7)0.0024 (6)−0.0078 (6)−0.0240 (6)
C30.0447 (8)0.0520 (9)0.0481 (8)0.0033 (7)−0.0074 (6)−0.0236 (7)
C40.0533 (10)0.0517 (9)0.0542 (9)−0.0063 (7)−0.0023 (7)−0.0174 (8)
C50.0476 (9)0.0517 (9)0.0710 (10)−0.0073 (7)−0.0068 (8)−0.0291 (8)
C60.0413 (8)0.0500 (9)0.0604 (9)0.0019 (7)−0.0104 (7)−0.0313 (8)
C70.0524 (10)0.0669 (11)0.0770 (12)−0.0012 (8)−0.0186 (8)−0.0459 (10)
C80.0705 (12)0.0781 (13)0.0631 (11)0.0009 (10)−0.0218 (9)−0.0447 (10)
C90.0693 (12)0.0675 (11)0.0502 (9)−0.0004 (9)−0.0131 (8)−0.0303 (8)
C100.0546 (9)0.0548 (9)0.0484 (8)−0.0041 (7)−0.0087 (7)−0.0273 (7)
C110.0382 (7)0.0459 (8)0.0514 (8)0.0037 (6)−0.0099 (6)−0.0281 (7)
C120.0408 (8)0.0466 (8)0.0491 (8)0.0033 (6)−0.0097 (6)−0.0265 (7)
C130.0434 (8)0.0513 (8)0.0511 (8)0.0048 (7)−0.0107 (6)−0.0305 (7)
C140.0470 (8)0.0513 (9)0.0608 (9)0.0061 (7)−0.0149 (7)−0.0350 (8)
C150.0479 (9)0.0466 (8)0.0643 (10)0.0032 (7)−0.0131 (7)−0.0321 (8)
C160.0669 (11)0.0694 (12)0.0754 (12)−0.0004 (9)−0.0208 (9)−0.0468 (10)
C170.0555 (10)0.0647 (11)0.0516 (9)0.0015 (8)−0.0124 (7)−0.0340 (8)
C180.144 (2)0.0779 (15)0.0481 (10)−0.0184 (15)−0.0121 (12)−0.0198 (10)
C190.186 (4)0.0726 (17)0.0824 (17)−0.0039 (19)−0.0425 (19)−0.0114 (13)
C200.0577 (10)0.0493 (9)0.0721 (11)0.0000 (8)−0.0081 (8)−0.0314 (9)
C210.110 (2)0.0604 (13)0.0830 (15)−0.0210 (13)0.0127 (13)−0.0261 (11)
C220.163 (3)0.099 (2)0.0858 (18)−0.027 (2)0.0238 (19)−0.0308 (16)
S1—C121.7247 (16)C13—C141.424 (3)
S1—C151.728 (2)C14—C151.362 (2)
O1—C31.331 (2)C14—C161.505 (3)
O2—C171.201 (3)C15—C201.466 (3)
O3—C171.332 (3)C18—C191.448 (5)
O3—C181.449 (2)C21—C221.447 (4)
O4—C201.195 (3)C1—H10.9300
O5—C201.335 (2)C4—H40.9300
O5—C211.445 (3)C5—H50.9300
O1—H1A0.8200C7—H70.9300
N1—C121.379 (2)C8—H80.9300
N1—C11.291 (2)C9—H90.9300
C1—C21.429 (2)C10—H100.9300
C2—C31.396 (2)C16—H16A0.9600
C2—C111.445 (2)C16—H16B0.9600
C3—C41.413 (3)C16—H16C0.9600
C4—C51.350 (3)C18—H18A0.9700
C5—C61.414 (3)C18—H18B0.9700
C6—C111.416 (3)C19—H19A0.9600
C6—C71.412 (3)C19—H19B0.9600
C7—C81.357 (3)C19—H19C0.9600
C8—C91.389 (3)C21—H21A0.9700
C9—C101.367 (3)C21—H21B0.9700
C10—C111.412 (2)C22—H22A0.9600
C12—C131.383 (2)C22—H22B0.9600
C13—C171.478 (2)C22—H22C0.9600
S1···O52.7985 (16)C14···C11i3.487 (2)
S1···C2i3.6620 (17)C15···C2i3.592 (3)
S1···C3i3.6260 (18)C15···C3i3.581 (3)
S1···H12.5900C16···O22.993 (3)
O1···O33.209 (2)C16···O42.978 (3)
O1···N12.561 (2)C20···C4i3.523 (3)
O2···C162.993 (3)C1···H102.6600
O3···N12.8195 (18)C1···H1A2.3900
O3···O13.209 (2)C8···H18Bviii3.0700
O4···C162.978 (3)C8···H16Ai3.1000
O4···C7ii3.269 (3)C9···H16Ai3.0700
O5···S12.7985 (16)C10···H12.6400
O1···H19C2.6600C12···H1A3.0200
O2···H18A2.5600C17···H16A2.9200
O2···H21Biii2.6000C20···H16C2.7100
O2···H9iv2.6100C20···H16Biii2.9700
O2···H16A2.8300H1···S12.5900
O2···H18Av2.7200H1···C102.6400
O2···H16B2.7300H1···H102.0800
O2···H18B2.6900H1A···O32.5800
O3···H1A2.5800H1A···N11.8300
O3···H10i2.9100H1A···C12.3900
O4···H7ii2.3700H1A···C123.0200
O4···H21A2.5100H5···H72.4600
O4···H21B2.7400H7···O4vii2.3700
O4···H16C2.2500H7···H52.4600
O5···H16Biii2.9100H9···O2viii2.6100
N1···O12.561 (2)H10···C12.6600
N1···O32.8195 (18)H10···H12.0800
N1···C6vi3.369 (2)H10···O3i2.9100
N1···H1A1.8300H16A···O22.8300
C1···C6vi3.531 (3)H16A···C172.9200
C1···C12i3.319 (2)H16A···C8i3.1000
C1···C5vi3.469 (3)H16A···C9i3.0700
C2···C11vi3.594 (2)H16B···O22.7300
C2···C15i3.592 (3)H16B···O5iii2.9100
C2···S1i3.6620 (17)H16B···C20iii2.9700
C2···C2vi3.469 (2)H16C···O42.2500
C3···C11vi3.519 (3)H16C···C202.7100
C3···C15i3.581 (3)H18A···O22.5600
C3···S1i3.6260 (18)H18A···O2v2.7200
C4···C20i3.523 (3)H18B···O22.6900
C5···C1vi3.469 (3)H18B···C8iv3.0700
C6···N1vi3.369 (2)H19B···H22Bix2.6000
C6···C1vi3.531 (3)H19C···O12.6600
C7···O4vii3.269 (3)H21A···O42.5100
C11···C3vi3.519 (3)H21B···O42.7400
C11···C14i3.487 (2)H21B···O2iii2.6000
C11···C2vi3.594 (2)H22B···H19Bx2.6000
C12···C1i3.319 (2)
C12—S1—C1590.91 (9)O5—C21—C22108.0 (2)
C17—O3—C18116.55 (16)N1—C1—H1119.00
C20—O5—C21116.42 (17)C2—C1—H1119.00
C3—O1—H1A109.00C3—C4—H4120.00
C1—N1—C12121.62 (14)C5—C4—H4120.00
N1—C1—C2122.21 (14)C4—C5—H5119.00
C1—C2—C11120.78 (14)C6—C5—H5119.00
C3—C2—C11119.38 (16)C6—C7—H7119.00
C1—C2—C3119.82 (15)C8—C7—H7119.00
O1—C3—C2123.00 (17)C7—C8—H8120.00
C2—C3—C4120.20 (16)C9—C8—H8120.00
O1—C3—C4116.80 (15)C8—C9—H9120.00
C3—C4—C5120.63 (17)C10—C9—H9120.00
C4—C5—C6121.71 (19)C9—C10—H10119.00
C5—C6—C11119.22 (16)C11—C10—H10119.00
C7—C6—C11119.68 (16)C14—C16—H16A109.00
C5—C6—C7121.10 (18)C14—C16—H16B109.00
C6—C7—C8121.1 (2)C14—C16—H16C110.00
C7—C8—C9119.68 (19)H16A—C16—H16B109.00
C8—C9—C10120.87 (17)H16A—C16—H16C110.00
C9—C10—C11121.34 (18)H16B—C16—H16C109.00
C2—C11—C6118.85 (14)O3—C18—H18A110.00
C6—C11—C10117.30 (15)O3—C18—H18B110.00
C2—C11—C10123.85 (16)C19—C18—H18A110.00
S1—C12—N1123.46 (12)C19—C18—H18B110.00
S1—C12—C13111.39 (13)H18A—C18—H18B108.00
N1—C12—C13125.11 (14)C18—C19—H19A109.00
C12—C13—C14113.15 (14)C18—C19—H19B109.00
C12—C13—C17123.98 (17)C18—C19—H19C109.00
C14—C13—C17122.84 (16)H19A—C19—H19B110.00
C13—C14—C16123.87 (16)H19A—C19—H19C109.00
C15—C14—C16124.86 (18)H19B—C19—H19C109.00
C13—C14—C15111.23 (16)O5—C21—H21A110.00
S1—C15—C14113.31 (15)O5—C21—H21B110.00
C14—C15—C20127.68 (18)C22—C21—H21A110.00
S1—C15—C20118.98 (14)C22—C21—H21B110.00
O2—C17—O3123.34 (17)H21A—C21—H21B108.00
O3—C17—C13112.87 (16)C21—C22—H22A109.00
O2—C17—C13123.8 (2)C21—C22—H22B109.00
O3—C18—C19109.3 (2)C21—C22—H22C109.00
O4—C20—O5123.28 (19)H22A—C22—H22B109.00
O5—C20—C15111.10 (18)H22A—C22—H22C109.00
O4—C20—C15125.61 (19)H22B—C22—H22C109.00
C15—S1—C12—C130.71 (14)C5—C6—C11—C10178.60 (17)
C12—S1—C15—C14−1.17 (15)C5—C6—C7—C8−179.4 (2)
C12—S1—C15—C20176.74 (16)C7—C6—C11—C2178.44 (17)
C15—S1—C12—N1178.59 (15)C11—C6—C7—C81.0 (3)
C18—O3—C17—O20.1 (3)C6—C7—C8—C90.7 (3)
C17—O3—C18—C19−174.4 (3)C7—C8—C9—C10−1.5 (3)
C18—O3—C17—C13179.2 (2)C8—C9—C10—C110.6 (3)
C21—O5—C20—C15−177.41 (18)C9—C10—C11—C61.0 (3)
C20—O5—C21—C22169.1 (2)C9—C10—C11—C2−179.21 (18)
C21—O5—C20—O42.0 (3)S1—C12—C13—C14−0.1 (2)
C12—N1—C1—C2−177.45 (16)N1—C12—C13—C170.3 (3)
C1—N1—C12—C13178.89 (17)N1—C12—C13—C14−177.96 (16)
C1—N1—C12—S11.3 (2)S1—C12—C13—C17178.14 (15)
N1—C1—C2—C11177.84 (16)C17—C13—C14—C15−179.04 (17)
N1—C1—C2—C3−0.6 (3)C12—C13—C14—C16−178.26 (17)
C1—C2—C3—C4178.30 (17)C12—C13—C14—C15−0.7 (2)
C11—C2—C3—C4−0.2 (3)C17—C13—C14—C163.4 (3)
C1—C2—C3—O1−1.7 (3)C14—C13—C17—O3−143.40 (18)
C11—C2—C3—O1179.81 (17)C12—C13—C17—O2−142.4 (2)
C1—C2—C11—C6−177.67 (16)C14—C13—C17—O235.7 (3)
C1—C2—C11—C102.6 (3)C12—C13—C17—O338.5 (2)
C3—C2—C11—C10−178.99 (17)C13—C14—C15—C20−176.40 (18)
C3—C2—C11—C60.8 (2)C16—C14—C15—S1178.78 (15)
O1—C3—C4—C5180.00 (19)C16—C14—C15—C201.1 (3)
C2—C3—C4—C50.0 (3)C13—C14—C15—S11.3 (2)
C3—C4—C5—C6−0.4 (3)C14—C15—C20—O5173.23 (19)
C4—C5—C6—C111.0 (3)S1—C15—C20—O4176.31 (18)
C4—C5—C6—C7−178.60 (19)S1—C15—C20—O5−4.4 (2)
C5—C6—C11—C2−1.2 (3)C14—C15—C20—O4−6.1 (3)
C7—C6—C11—C10−1.8 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O30.822.583.209 (2)135
O1—H1A···N10.821.832.561 (2)147
C1—H1···S10.932.593.0263 (18)109
C7—H7···O4vii0.932.373.269 (3)163
C16—H16C···O40.962.252.978 (3)132
C21—H21B···O2iii0.972.603.565 (3)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O30.822.583.209 (2)135
O1—H1A⋯N10.821.832.561 (2)147
C1—H1⋯S10.932.593.0263 (18)109
C7—H7⋯O4i0.932.373.269 (3)163
C16—H16C⋯O40.962.252.978 (3)132
C21—H21B⋯O2ii0.972.603.565 (3)175

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyl 2-(2-hydroxy-benzyl-ideneamino)-4,5,6,7-tetra-hydro-1-benzothio-phene-3-carboxyl-ate.

Authors:  Mehmet Akkurt; Selvi Karaca; Abdullah Mohamed Asiri; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-18

3.  Synthesis of some new anils: part 1. Reaction of 2-hydroxy-benzaldehyde and 2-hydroxynaphthaldehyde with 2-aminopyridene and 2-aminopyrazine.

Authors:  Abdullah M Asiri; Khadija O Badahdah
Journal:  Molecules       Date:  2007-08-13       Impact factor: 4.411

4.  4-[(2-Hydr-oxy-1-naphth-yl)methyl-idene-amino]benzoic acid.

Authors:  Mehmet Akkurt; Sema Öztürk Yıldırım; Abdullah Mohamed Asiri; Vickie McKee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-07
  4 in total
  1 in total

1.  Ethyl 5-acetyl-2-amino-4-methyl-thio-phene-3-carboxyl-ate.

Authors:  Mehmet Akkurt; Sema Öztürk Yıldırım; Abdullah Mohamed Asiri; Vickie McKee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-17
  1 in total

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