Literature DB >> 21202507

trans-Bis(1H-indole-3-carbaldehyde thio-semicarbazonato-κN,S)nickel(II).

Mohd Razali Rizal1, Hapipah M Ali, Seik Weng Ng.   

Abstract

The Ni atom in the centrosymmetric title compound, [Ni(C(10)H(9)N(4)S)(2)], is N,S-chelated by the deprotonated Schiff bases in a square-planar geometry. The -CH=N-N=C(S)-NH(2) frament is planar. Adjacent mol-ecules are linked by hydrogen bonds between the indolyl -NH (donor) site and the double-bond =N- (acceptor) site of an adjacent mol-ecule, forming a layer motif.

Entities:  

Year:  2008        PMID: 21202507      PMCID: PMC2961409          DOI: 10.1107/S1600536808014293

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the neutral Schiff base, see: Rizal et al. (2008 ▶). For background literature on the medicinal activity of metal complexes of the Schiff base and related compounds, see: Husain et al. (2007 ▶); Wilson et al. (2005 ▶).

Experimental

Crystal data

[Ni(C10H9N4S)2] M = 493.25 Monoclinic, a = 10.4388 (3) Å b = 5.2604 (1) Å c = 19.1122 (5) Å β = 104.803 (2)° V = 1014.66 (4) Å3 Z = 2 Mo Kα radiation μ = 1.19 mm−1 T = 100 (2) K 0.14 × 0.04 × 0.01 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.851, T max = 0.988 12357 measured reflections 2326 independent reflections 1774 reflections with I > 2σ(I) R int = 0.062

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.081 S = 1.02 2326 reflections 154 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶; Dolomanov et al., 2003); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808014293/sg2241sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808014293/sg2241Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C10H9N4S)2]F000 = 508
Mr = 493.25Dx = 1.614 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1799 reflections
a = 10.4388 (3) Åθ = 2.6–24.7º
b = 5.2604 (1) ŵ = 1.19 mm1
c = 19.1122 (5) ÅT = 100 (2) K
β = 104.803 (2)ºPlate, orange
V = 1014.66 (4) Å30.14 × 0.04 × 0.01 mm
Z = 2
Bruker SMART APEX diffractometer2326 independent reflections
Radiation source: fine-focus sealed tube1774 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.062
T = 100(2) Kθmax = 27.5º
φ and ω scansθmin = 2.0º
Absorption correction: Multi-scan(SADABS; Sheldrick, 1996)h = −12→13
Tmin = 0.851, Tmax = 0.988k = −6→6
12357 measured reflectionsl = −24→24
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.081  w = 1/[σ2(Fo2) + (0.0362P)2 + 0.5143P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
2326 reflectionsΔρmax = 0.43 e Å3
154 parametersΔρmin = −0.30 e Å3
3 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
Ni10.50000.50000.50000.01261 (12)
S10.33444 (6)0.74950 (12)0.45463 (3)0.01747 (15)
N10.6654 (2)1.1528 (4)0.78929 (11)0.0171 (5)
H1N0.637 (3)1.262 (5)0.8165 (14)0.045 (10)*
N20.52205 (19)0.6972 (4)0.58664 (10)0.0143 (4)
N30.42554 (19)0.8723 (4)0.59419 (10)0.0153 (4)
N40.2345 (2)1.0700 (4)0.53342 (12)0.0205 (5)
H4N10.240 (3)1.177 (5)0.5691 (12)0.042 (10)*
H4N20.184 (3)1.121 (6)0.4919 (10)0.043 (10)*
C10.7786 (2)0.8186 (5)0.76257 (12)0.0154 (5)
C20.8845 (2)0.6471 (5)0.77478 (13)0.0182 (5)
H20.88690.51590.74100.022*
C30.9859 (2)0.6731 (5)0.83732 (13)0.0195 (5)
H31.05880.55900.84600.023*
C40.9830 (2)0.8646 (5)0.88809 (13)0.0190 (5)
H41.05380.87660.93060.023*
C50.8795 (2)1.0361 (5)0.87760 (12)0.0178 (5)
H50.87741.16590.91180.021*
C60.7782 (2)1.0092 (5)0.81421 (12)0.0159 (5)
C70.5945 (2)1.0621 (5)0.72458 (12)0.0166 (5)
H70.51321.13090.69690.020*
C80.6586 (2)0.8537 (5)0.70493 (12)0.0166 (5)
C90.6276 (2)0.6972 (5)0.64112 (12)0.0163 (5)
H90.69350.57610.63810.020*
C100.3354 (2)0.9073 (5)0.53374 (13)0.0159 (5)
U11U22U33U12U13U23
Ni10.0129 (2)0.0143 (2)0.0104 (2)0.00022 (19)0.00260 (16)−0.00047 (18)
S10.0180 (3)0.0207 (3)0.0124 (3)0.0042 (3)0.0014 (2)−0.0010 (2)
N10.0177 (11)0.0189 (11)0.0140 (10)0.0007 (9)0.0029 (8)−0.0039 (9)
N20.0161 (10)0.0141 (10)0.0127 (9)0.0014 (8)0.0036 (8)−0.0004 (8)
N30.0155 (11)0.0171 (11)0.0137 (10)0.0021 (9)0.0047 (8)−0.0002 (8)
N40.0225 (12)0.0210 (12)0.0172 (11)0.0080 (9)0.0035 (9)−0.0025 (9)
C10.0156 (12)0.0156 (12)0.0151 (11)−0.0034 (10)0.0042 (10)0.0002 (9)
C20.0190 (13)0.0192 (13)0.0177 (12)−0.0019 (10)0.0068 (10)−0.0025 (10)
C30.0153 (13)0.0225 (14)0.0205 (12)0.0005 (11)0.0040 (10)0.0028 (11)
C40.0166 (13)0.0245 (14)0.0148 (11)−0.0037 (11)0.0018 (10)−0.0005 (10)
C50.0196 (13)0.0207 (14)0.0127 (11)−0.0040 (11)0.0034 (10)−0.0005 (10)
C60.0172 (12)0.0167 (12)0.0151 (11)−0.0011 (11)0.0063 (9)0.0013 (10)
C70.0166 (12)0.0190 (14)0.0137 (11)−0.0016 (10)0.0030 (10)−0.0003 (9)
C80.0191 (13)0.0177 (13)0.0135 (11)−0.0022 (10)0.0051 (10)0.0001 (10)
C90.0175 (12)0.0176 (13)0.0145 (11)0.0008 (10)0.0055 (10)0.0003 (10)
C100.0180 (13)0.0140 (12)0.0182 (12)−0.0033 (10)0.0092 (10)0.0007 (10)
Ni1—N2i1.919 (2)C1—C61.408 (3)
Ni1—N21.918 (2)C1—C81.453 (3)
Ni1—S1i2.1669 (6)C2—C31.386 (3)
Ni1—S12.1669 (6)C2—H20.9500
S1—C101.723 (2)C3—C41.404 (4)
N1—C71.355 (3)C3—H30.9500
N1—C61.377 (3)C4—C51.382 (4)
N1—H1n0.88 (3)C4—H40.9500
N2—C91.309 (3)C5—C61.397 (3)
N2—N31.399 (3)C5—H50.9500
N3—C101.303 (3)C7—C81.385 (3)
N4—C101.355 (3)C7—H70.9500
N4—H4n10.88 (3)C8—C91.438 (3)
N4—H4n20.88 (3)C9—H90.9500
C1—C21.400 (3)
N2i—Ni1—N2180.000 (1)C2—C3—H3119.3
N2i—Ni1—S1i85.72 (6)C4—C3—H3119.3
N2—Ni1—S185.72 (6)C5—C4—C3121.5 (2)
N2—Ni1—S1i94.28 (6)C5—C4—H4119.3
N2i—Ni1—S194.28 (6)C3—C4—H4119.3
S1i—Ni1—S1180.0C4—C5—C6116.8 (2)
C10—S1—Ni196.63 (9)C4—C5—H5121.6
C7—N1—C6110.0 (2)C6—C5—H5121.6
C7—N1—H1N126 (2)N1—C6—C5129.5 (2)
C6—N1—H1N123 (2)N1—C6—C1107.7 (2)
C9—N2—N3113.60 (19)C5—C6—C1122.9 (2)
C9—N2—Ni1125.30 (17)N1—C7—C8109.7 (2)
N3—N2—Ni1120.96 (14)N1—C7—H7125.1
C10—N3—N2112.16 (19)C8—C7—H7125.1
C10—N4—H4N1121 (2)C7—C8—C9131.6 (2)
C10—N4—H4N2119 (2)C7—C8—C1106.1 (2)
H4N1—N4—H4N2114 (3)C9—C8—C1122.2 (2)
C2—C1—C6119.1 (2)N2—C9—C8129.5 (2)
C2—C1—C8134.4 (2)N2—C9—H9115.3
C6—C1—C8106.5 (2)C8—C9—H9115.3
C3—C2—C1118.5 (2)N3—C10—N4118.5 (2)
C3—C2—H2120.8N3—C10—S1123.44 (19)
C1—C2—H2120.8N4—C10—S1118.03 (18)
C2—C3—C4121.3 (2)
N2i—Ni1—S1—C10172.73 (10)C8—C1—C6—N1−0.4 (3)
N2—Ni1—S1—C10−7.27 (10)C2—C1—C6—C50.1 (4)
S1i—Ni1—N2—C915.3 (2)C8—C1—C6—C5−179.6 (2)
S1—Ni1—N2—C9−164.7 (2)C6—N1—C7—C80.3 (3)
S1i—Ni1—N2—N3−169.40 (16)N1—C7—C8—C9−177.4 (2)
S1—Ni1—N2—N310.60 (16)N1—C7—C8—C1−0.5 (3)
C9—N2—N3—C10166.4 (2)C2—C1—C8—C7−179.1 (3)
Ni1—N2—N3—C10−9.4 (3)C6—C1—C8—C70.6 (3)
C6—C1—C2—C3−0.5 (4)C2—C1—C8—C9−1.8 (4)
C8—C1—C2—C3179.2 (3)C6—C1—C8—C9177.8 (2)
C1—C2—C3—C40.6 (4)N3—N2—C9—C8−2.0 (4)
C2—C3—C4—C5−0.4 (4)Ni1—N2—C9—C8173.7 (2)
C3—C4—C5—C60.1 (4)C7—C8—C9—N2−7.0 (5)
C7—N1—C6—C5179.2 (2)C1—C8—C9—N2176.5 (2)
C7—N1—C6—C10.1 (3)N2—N3—C10—N4179.1 (2)
C4—C5—C6—N1−178.9 (2)N2—N3—C10—S11.4 (3)
C4—C5—C6—C10.1 (4)Ni1—S1—C10—N35.4 (2)
C2—C1—C6—N1179.3 (2)Ni1—S1—C10—N4−172.37 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1n···N3ii0.88 (3)2.06 (2)2.876 (3)155 (3)
Ni1—N21.918 (2)
Ni1—S12.1669 (6)
N2—Ni1—S185.72 (6)
N2—Ni1—S1i94.28 (6)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯N3ii0.88 (3)2.06 (2)2.876 (3)155 (3)

Symmetry code: (ii) .

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