| Literature DB >> 21202401 |
Razali M Rizal1, Hapipah M Ali, Seik Weng Ng.
Abstract
The mol-ecules of the title compound, C(10)H(10)N(4)S, are linked by N-H(indole)⋯S hydrogen bonds to form a linear hydrogen-bonded chain. There are two independent mol-ecules in the asymmetric unit.Entities:
Year: 2008 PMID: 21202401 PMCID: PMC2961326 DOI: 10.1107/S1600536808011082
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H10N4S | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 4065 reflections | |
| θ = 3.6–30.8º | |
| µ = 0.29 mm−1 | |
| α = 68.887 (1)º | |
| β = 85.048 (1)º | Wedge, colorless |
| γ = 82.467 (1)º | 0.44 × 0.24 × 0.04 mm |
| Bruker APEXII diffractometer | 4527 independent reflections |
| Radiation source: medium-focus sealed tube | 3142 reflections with |
| Monochromator: graphite | |
| θmax = 27.5º | |
| φ and ω scans | θmin = 1.6º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 9295 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max = 0.001 | |
| 4527 reflections | Δρmax = 0.45 e Å−3 |
| 303 parameters | Δρmin = −0.45 e Å−3 |
| 8 restraints | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods |
| Experimental. A medium-focus collimator of 0.8 mm diameter was used on the diffractometer to measure the somewhat large crystal. |
| S1 | 0.61344 (11) | 0.11515 (7) | 0.35357 (6) | 0.0218 (2) | |
| S2 | 0.81997 (11) | 0.34262 (7) | 0.04922 (6) | 0.0250 (2) | |
| N1 | 0.7013 (4) | 0.1337 (3) | 0.5349 (2) | 0.0272 (6) | |
| H1N1 | 0.721 (5) | 0.173 (3) | 0.577 (2) | 0.044 (11)* | |
| H1N2 | 0.680 (6) | 0.0521 (16) | 0.568 (3) | 0.053 (13)* | |
| N2 | 0.6604 (3) | 0.3220 (2) | 0.39282 (18) | 0.0179 (5) | |
| H2N | 0.642 (5) | 0.354 (3) | 0.3237 (10) | 0.042 (11)* | |
| N3 | 0.7031 (3) | 0.3921 (2) | 0.45314 (18) | 0.0171 (5) | |
| N4 | 0.7758 (4) | 0.7985 (2) | 0.45494 (19) | 0.0208 (5) | |
| H4N | 0.762 (5) | 0.8832 (11) | 0.440 (3) | 0.040 (11)* | |
| N5 | 0.5325 (4) | 0.4371 (3) | 0.1469 (2) | 0.0239 (6) | |
| H5N1 | 0.450 (4) | 0.502 (2) | 0.147 (3) | 0.037 (10)* | |
| H5N2 | 0.487 (5) | 0.365 (2) | 0.154 (3) | 0.037 (10)* | |
| N6 | 0.7531 (4) | 0.5739 (2) | 0.0624 (2) | 0.0223 (5) | |
| H6N | 0.855 (3) | 0.590 (4) | 0.021 (3) | 0.047 (11)* | |
| N7 | 0.6520 (3) | 0.6664 (2) | 0.09750 (19) | 0.0199 (5) | |
| N8 | 0.6103 (3) | 1.0744 (2) | 0.11636 (19) | 0.0210 (5) | |
| H8N | 0.640 (5) | 1.1508 (18) | 0.111 (3) | 0.037 (10)* | |
| C1 | 0.6607 (4) | 0.1932 (3) | 0.4337 (2) | 0.0173 (6) | |
| C2 | 0.6936 (4) | 0.5146 (3) | 0.4011 (2) | 0.0175 (6) | |
| H2 | 0.6579 | 0.5459 | 0.3296 | 0.021* | |
| C3 | 0.7347 (4) | 0.6064 (3) | 0.4466 (2) | 0.0161 (6) | |
| C4 | 0.7238 (4) | 0.7375 (3) | 0.3922 (2) | 0.0196 (6) | |
| H4 | 0.6857 | 0.7794 | 0.3213 | 0.024* | |
| C5 | 0.7953 (4) | 0.5851 (3) | 0.5511 (2) | 0.0148 (5) | |
| C6 | 0.8287 (4) | 0.4758 (3) | 0.6422 (2) | 0.0188 (6) | |
| H6 | 0.8136 | 0.3924 | 0.6426 | 0.023* | |
| C7 | 0.8843 (4) | 0.4918 (3) | 0.7319 (2) | 0.0230 (6) | |
| H7 | 0.9067 | 0.4184 | 0.7944 | 0.028* | |
| C8 | 0.9078 (4) | 0.6146 (3) | 0.7319 (2) | 0.0237 (7) | |
| H8 | 0.9464 | 0.6227 | 0.7943 | 0.028* | |
| C9 | 0.8759 (4) | 0.7244 (3) | 0.6426 (2) | 0.0211 (6) | |
| H9 | 0.8925 | 0.8074 | 0.6426 | 0.025* | |
| C10 | 0.8183 (4) | 0.7082 (3) | 0.5529 (2) | 0.0174 (6) | |
| C11 | 0.6925 (4) | 0.4572 (3) | 0.0883 (2) | 0.0192 (6) | |
| C12 | 0.7333 (4) | 0.7692 (3) | 0.0773 (2) | 0.0189 (6) | |
| H12 | 0.8548 | 0.7738 | 0.0434 | 0.023* | |
| C13 | 0.6459 (4) | 0.8771 (3) | 0.1045 (2) | 0.0164 (6) | |
| C14 | 0.7289 (4) | 0.9880 (3) | 0.0867 (2) | 0.0191 (6) | |
| H14 | 0.8527 | 1.0017 | 0.0576 | 0.023* | |
| C15 | 0.4594 (4) | 0.8983 (3) | 0.1488 (2) | 0.0156 (6) | |
| C16 | 0.3047 (4) | 0.8256 (3) | 0.1817 (2) | 0.0210 (6) | |
| H16 | 0.3122 | 0.7412 | 0.1790 | 0.025* | |
| C17 | 0.1416 (4) | 0.8801 (3) | 0.2180 (2) | 0.0247 (7) | |
| H17 | 0.0372 | 0.8312 | 0.2414 | 0.030* | |
| C18 | 0.1256 (4) | 1.0053 (3) | 0.2214 (2) | 0.0245 (7) | |
| H18 | 0.0106 | 1.0403 | 0.2453 | 0.029* | |
| C19 | 0.2771 (4) | 1.0783 (3) | 0.1898 (2) | 0.0231 (6) | |
| H19 | 0.2682 | 1.1629 | 0.1922 | 0.028* | |
| C20 | 0.4422 (4) | 1.0232 (3) | 0.1547 (2) | 0.0185 (6) |
| S1 | 0.0312 (4) | 0.0162 (4) | 0.0216 (4) | −0.0052 (3) | −0.0014 (3) | −0.0101 (3) |
| S2 | 0.0274 (4) | 0.0203 (4) | 0.0321 (4) | −0.0073 (3) | 0.0061 (3) | −0.0150 (3) |
| N1 | 0.0433 (17) | 0.0196 (14) | 0.0201 (13) | −0.0059 (13) | −0.0052 (12) | −0.0070 (11) |
| N2 | 0.0242 (13) | 0.0160 (12) | 0.0171 (12) | −0.0055 (10) | −0.0017 (10) | −0.0089 (10) |
| N3 | 0.0168 (12) | 0.0196 (13) | 0.0199 (12) | −0.0058 (10) | 0.0008 (9) | −0.0120 (10) |
| N4 | 0.0269 (13) | 0.0135 (13) | 0.0233 (13) | −0.0045 (11) | −0.0012 (10) | −0.0072 (10) |
| N5 | 0.0218 (13) | 0.0207 (14) | 0.0303 (14) | −0.0038 (11) | 0.0041 (11) | −0.0108 (12) |
| N6 | 0.0231 (13) | 0.0180 (13) | 0.0280 (14) | −0.0031 (11) | 0.0032 (11) | −0.0114 (11) |
| N7 | 0.0221 (12) | 0.0150 (12) | 0.0232 (12) | 0.0008 (10) | −0.0018 (10) | −0.0081 (10) |
| N8 | 0.0269 (14) | 0.0162 (13) | 0.0244 (13) | −0.0094 (11) | 0.0015 (10) | −0.0105 (10) |
| C1 | 0.0165 (13) | 0.0175 (14) | 0.0188 (14) | −0.0034 (11) | 0.0013 (11) | −0.0074 (11) |
| C2 | 0.0157 (13) | 0.0213 (15) | 0.0173 (13) | −0.0058 (12) | 0.0007 (10) | −0.0079 (11) |
| C3 | 0.0144 (13) | 0.0178 (14) | 0.0177 (13) | −0.0029 (11) | 0.0015 (10) | −0.0081 (11) |
| C4 | 0.0223 (15) | 0.0182 (15) | 0.0188 (14) | −0.0035 (12) | −0.0005 (11) | −0.0069 (12) |
| C5 | 0.0110 (12) | 0.0163 (14) | 0.0194 (13) | −0.0042 (11) | 0.0029 (10) | −0.0089 (11) |
| C6 | 0.0176 (14) | 0.0181 (15) | 0.0220 (14) | −0.0036 (12) | −0.0004 (11) | −0.0080 (12) |
| C7 | 0.0224 (15) | 0.0254 (16) | 0.0189 (14) | −0.0020 (13) | −0.0019 (12) | −0.0051 (12) |
| C8 | 0.0193 (14) | 0.0349 (18) | 0.0221 (15) | −0.0027 (13) | −0.0025 (12) | −0.0159 (13) |
| C9 | 0.0171 (14) | 0.0239 (16) | 0.0279 (15) | −0.0020 (12) | −0.0003 (12) | −0.0163 (13) |
| C10 | 0.0138 (13) | 0.0175 (15) | 0.0225 (14) | −0.0024 (11) | 0.0023 (11) | −0.0096 (12) |
| C11 | 0.0210 (15) | 0.0170 (15) | 0.0215 (14) | −0.0031 (12) | −0.0030 (11) | −0.0083 (12) |
| C12 | 0.0204 (14) | 0.0175 (15) | 0.0176 (13) | −0.0009 (12) | −0.0011 (11) | −0.0053 (11) |
| C13 | 0.0206 (14) | 0.0125 (14) | 0.0152 (13) | −0.0041 (11) | −0.0022 (11) | −0.0025 (11) |
| C14 | 0.0199 (14) | 0.0208 (15) | 0.0177 (13) | −0.0047 (12) | −0.0003 (11) | −0.0072 (12) |
| C15 | 0.0175 (13) | 0.0149 (14) | 0.0133 (13) | −0.0013 (11) | −0.0039 (10) | −0.0030 (11) |
| C16 | 0.0237 (15) | 0.0165 (15) | 0.0216 (14) | −0.0060 (12) | −0.0035 (12) | −0.0032 (12) |
| C17 | 0.0172 (14) | 0.0294 (17) | 0.0258 (15) | −0.0066 (13) | −0.0009 (12) | −0.0065 (13) |
| C18 | 0.0201 (15) | 0.0312 (18) | 0.0223 (15) | 0.0027 (13) | −0.0005 (12) | −0.0114 (13) |
| C19 | 0.0299 (16) | 0.0206 (16) | 0.0207 (14) | 0.0018 (13) | −0.0057 (12) | −0.0101 (12) |
| C20 | 0.0237 (15) | 0.0180 (14) | 0.0161 (13) | −0.0040 (12) | −0.0050 (11) | −0.0072 (11) |
| S1—C1 | 1.696 (3) | C4—H4 | 0.9500 |
| S2—C11 | 1.689 (3) | C5—C6 | 1.399 (4) |
| N1—C1 | 1.329 (4) | C5—C10 | 1.415 (4) |
| N1—H1N1 | 0.87 (3) | C6—C7 | 1.388 (4) |
| N1—H1N2 | 0.89 (3) | C6—H6 | 0.9500 |
| N2—C1 | 1.341 (4) | C7—C8 | 1.403 (4) |
| N2—N3 | 1.393 (3) | C7—H7 | 0.9500 |
| N2—H2N | 0.887 (10) | C8—C9 | 1.386 (4) |
| N3—C2 | 1.289 (4) | C8—H8 | 0.9500 |
| N4—C4 | 1.365 (3) | C9—C10 | 1.395 (4) |
| N4—C10 | 1.376 (4) | C9—H9 | 0.9500 |
| N4—H4N | 0.886 (10) | C12—C13 | 1.436 (4) |
| N5—C11 | 1.335 (4) | C12—H12 | 0.9500 |
| N5—H5N1 | 0.88 (3) | C13—C14 | 1.379 (4) |
| N5—H5N2 | 0.88 (3) | C13—C15 | 1.446 (4) |
| N6—C11 | 1.344 (4) | C14—H14 | 0.9500 |
| N6—N7 | 1.385 (3) | C15—C16 | 1.409 (4) |
| N6—H6N | 0.88 (3) | C15—C20 | 1.414 (4) |
| N7—C12 | 1.287 (4) | C16—C17 | 1.384 (4) |
| N8—C14 | 1.350 (4) | C16—H16 | 0.9500 |
| N8—C20 | 1.384 (4) | C17—C18 | 1.405 (4) |
| N8—H8N | 0.88 (3) | C17—H17 | 0.9500 |
| C2—C3 | 1.443 (4) | C18—C19 | 1.391 (4) |
| C2—H2 | 0.9500 | C18—H18 | 0.9500 |
| C3—C4 | 1.376 (4) | C19—C20 | 1.391 (4) |
| C3—C5 | 1.443 (4) | C19—H19 | 0.9500 |
| C1—N1—H1N1 | 124 (3) | C8—C7—H7 | 119.5 |
| C1—N1—H1N2 | 120 (3) | C9—C8—C7 | 121.4 (3) |
| H1N1—N1—H1N2 | 114 (4) | C9—C8—H8 | 119.3 |
| C1—N2—N3 | 121.7 (2) | C7—C8—H8 | 119.3 |
| C1—N2—H2N | 113 (2) | C8—C9—C10 | 117.4 (3) |
| N3—N2—H2N | 125 (2) | C8—C9—H9 | 121.3 |
| C2—N3—N2 | 113.1 (2) | C10—C9—H9 | 121.3 |
| C4—N4—C10 | 109.1 (2) | N4—C10—C9 | 129.9 (3) |
| C4—N4—H4N | 125 (2) | N4—C10—C5 | 108.0 (2) |
| C10—N4—H4N | 125 (2) | C9—C10—C5 | 122.1 (3) |
| C11—N5—H5N1 | 121 (2) | N5—C11—N6 | 117.1 (3) |
| C11—N5—H5N2 | 115 (2) | N5—C11—S2 | 123.0 (2) |
| H5N1—N5—H5N2 | 116 (3) | N6—C11—S2 | 119.9 (2) |
| C11—N6—N7 | 120.0 (2) | N7—C12—C13 | 122.0 (3) |
| C11—N6—H6N | 118 (3) | N7—C12—H12 | 119.0 |
| N7—N6—H6N | 122 (3) | C13—C12—H12 | 119.0 |
| C12—N7—N6 | 114.4 (2) | C14—C13—C12 | 124.2 (3) |
| C14—N8—C20 | 109.3 (2) | C14—C13—C15 | 105.9 (2) |
| C14—N8—H8N | 123 (2) | C12—C13—C15 | 129.9 (2) |
| C20—N8—H8N | 127 (2) | N8—C14—C13 | 110.7 (3) |
| N1—C1—N2 | 117.8 (2) | N8—C14—H14 | 124.6 |
| N1—C1—S1 | 123.6 (2) | C13—C14—H14 | 124.6 |
| N2—C1—S1 | 118.6 (2) | C16—C15—C20 | 118.8 (3) |
| N3—C2—C3 | 123.1 (3) | C16—C15—C13 | 134.5 (3) |
| N3—C2—H2 | 118.5 | C20—C15—C13 | 106.7 (2) |
| C3—C2—H2 | 118.5 | C17—C16—C15 | 118.4 (3) |
| C4—C3—C2 | 123.6 (3) | C17—C16—H16 | 120.8 |
| C4—C3—C5 | 106.6 (2) | C15—C16—H16 | 120.8 |
| C2—C3—C5 | 129.8 (3) | C16—C17—C18 | 122.0 (3) |
| N4—C4—C3 | 110.1 (3) | C16—C17—H17 | 119.0 |
| N4—C4—H4 | 125.0 | C18—C17—H17 | 119.0 |
| C3—C4—H4 | 125.0 | C19—C18—C17 | 120.4 (3) |
| C6—C5—C10 | 119.4 (2) | C19—C18—H18 | 119.8 |
| C6—C5—C3 | 134.3 (2) | C17—C18—H18 | 119.8 |
| C10—C5—C3 | 106.3 (2) | C20—C19—C18 | 117.7 (3) |
| C7—C6—C5 | 118.6 (3) | C20—C19—H19 | 121.2 |
| C7—C6—H6 | 120.7 | C18—C19—H19 | 121.2 |
| C5—C6—H6 | 120.7 | N8—C20—C19 | 129.9 (3) |
| C6—C7—C8 | 121.1 (3) | N8—C20—C15 | 107.4 (2) |
| C6—C7—H7 | 119.5 | C19—C20—C15 | 122.6 (3) |
| C1—N2—N3—C2 | −179.2 (2) | C3—C5—C10—C9 | 179.8 (2) |
| C11—N6—N7—C12 | 173.1 (3) | N7—N6—C11—N5 | 0.9 (4) |
| N3—N2—C1—N1 | 0.7 (4) | N7—N6—C11—S2 | −177.8 (2) |
| N3—N2—C1—S1 | −178.20 (19) | N6—N7—C12—C13 | 177.7 (2) |
| N2—N3—C2—C3 | −179.0 (2) | N7—C12—C13—C14 | 178.5 (3) |
| N3—C2—C3—C4 | −179.5 (3) | N7—C12—C13—C15 | −4.9 (5) |
| N3—C2—C3—C5 | 1.5 (5) | C20—N8—C14—C13 | −0.3 (3) |
| C10—N4—C4—C3 | −1.2 (3) | C12—C13—C14—N8 | 177.4 (2) |
| C2—C3—C4—N4 | −178.3 (3) | C15—C13—C14—N8 | 0.1 (3) |
| C5—C3—C4—N4 | 0.9 (3) | C14—C13—C15—C16 | 178.4 (3) |
| C4—C3—C5—C6 | 178.6 (3) | C12—C13—C15—C16 | 1.3 (5) |
| C2—C3—C5—C6 | −2.3 (5) | C14—C13—C15—C20 | 0.1 (3) |
| C4—C3—C5—C10 | −0.2 (3) | C12—C13—C15—C20 | −177.0 (3) |
| C2—C3—C5—C10 | 178.9 (3) | C20—C15—C16—C17 | 0.3 (4) |
| C10—C5—C6—C7 | −0.2 (4) | C13—C15—C16—C17 | −177.8 (3) |
| C3—C5—C6—C7 | −178.8 (3) | C15—C16—C17—C18 | 1.0 (4) |
| C5—C6—C7—C8 | −0.3 (4) | C16—C17—C18—C19 | −1.4 (4) |
| C6—C7—C8—C9 | 0.3 (4) | C17—C18—C19—C20 | 0.4 (4) |
| C7—C8—C9—C10 | 0.4 (4) | C14—N8—C20—C19 | −177.0 (3) |
| C4—N4—C10—C9 | −179.3 (3) | C14—N8—C20—C15 | 0.4 (3) |
| C4—N4—C10—C5 | 1.0 (3) | C18—C19—C20—N8 | 178.0 (3) |
| C8—C9—C10—N4 | 179.5 (3) | C18—C19—C20—C15 | 0.9 (4) |
| C8—C9—C10—C5 | −0.9 (4) | C16—C15—C20—N8 | −178.9 (2) |
| C6—C5—C10—N4 | −179.5 (2) | C13—C15—C20—N8 | −0.3 (3) |
| C3—C5—C10—N4 | −0.5 (3) | C16—C15—C20—C19 | −1.3 (4) |
| C6—C5—C10—C9 | 0.8 (4) | C13—C15—C20—C19 | 177.4 (3) |
| H··· | ||||
| N4—H4n···S1i | 0.89 (1) | 2.56 (2) | 3.383 (3) | 156 (3) |
| N8—H8n···S2i | 0.88 (3) | 2.49 (2) | 3.325 (2) | 157 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H4n⋯S1i | 0.89 (1) | 2.56 (2) | 3.383 (3) | 156 (3) |
| N8—H8n⋯S2i | 0.88 (3) | 2.49 (2) | 3.325 (2) | 157 (3) |
Symmetry code: (i) .