Literature DB >> 21202401

1H-Indole-3-carbaldehyde thio-semi-carbazone.

Razali M Rizal1, Hapipah M Ali, Seik Weng Ng.   

Abstract

The mol-ecules of the title compound, C(10)H(10)N(4)S, are linked by N-H(indole)⋯S hydrogen bonds to form a linear hydrogen-bonded chain. There are two independent mol-ecules in the asymmetric unit.

Entities:  

Year:  2008        PMID: 21202401      PMCID: PMC2961326          DOI: 10.1107/S1600536808011082

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and bateriostatic activity of indole-3-carbaldehyde semithio­carbazone, see: Doyle et al. (1956 ▶); Fujikawa et al. (1966 ▶); Libermann et al. (1953 ▶); Weller et al. (1954 ▶). For metal complexes of the compound, see: Bhardwaj & Singh (1994 ▶); Dalvi et al. (2004 ▶); Garg & Tandon (1988 ▶); Kanoongo et al. (1988 ▶, 1990 ▶); Kiran et al. (1986 ▶); Kumari et al. (1992a ▶,b ▶; 1993a ▶,b ▶); Rodriguez-Argueelles et al. (2005 ▶); Saxena & Singh (1994 ▶); Saxena et al. (1993 ▶, 1994 ▶); Singh & Singh (1990 ▶); Singh et al. (1987 ▶, 1988 ▶); Varshney & Tandon (1989 ▶); Varshney et al. (1989 ▶, 1996 ▶).

Experimental

Crystal data

C10H10N4S M = 218.28 Triclinic, a = 7.1893 (1) Å b = 11.1654 (2) Å c = 13.5373 (3) Å α = 68.887 (1)° β = 85.048 (1)° γ = 82.467 (1)° V = 1004.07 (3) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 123 (2) K 0.44 × 0.24 × 0.04 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.857, T max = 0.988 9295 measured reflections 4527 independent reflections 3142 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.161 S = 1.10 4527 reflections 303 parameters 8 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.45 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808011082/rz2196sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808011082/rz2196Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H10N4SZ = 4
Mr = 218.28F000 = 456
Triclinic, P1Dx = 1.444 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 7.1893 (1) ÅCell parameters from 4065 reflections
b = 11.1654 (2) Åθ = 3.6–30.8º
c = 13.5373 (3) ŵ = 0.29 mm1
α = 68.887 (1)ºT = 123 (2) K
β = 85.048 (1)ºWedge, colorless
γ = 82.467 (1)º0.44 × 0.24 × 0.04 mm
V = 1004.07 (3) Å3
Bruker APEXII diffractometer4527 independent reflections
Radiation source: medium-focus sealed tube3142 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.036
T = 123(2) Kθmax = 27.5º
φ and ω scansθmin = 1.6º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −8→9
Tmin = 0.857, Tmax = 0.988k = −14→14
9295 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.161  w = 1/[σ2(Fo2) + (0.0864P)2 + 0.0582P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max = 0.001
4527 reflectionsΔρmax = 0.45 e Å3
303 parametersΔρmin = −0.45 e Å3
8 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Experimental. A medium-focus collimator of 0.8 mm diameter was used on the diffractometer to measure the somewhat large crystal.
xyzUiso*/Ueq
S10.61344 (11)0.11515 (7)0.35357 (6)0.0218 (2)
S20.81997 (11)0.34262 (7)0.04922 (6)0.0250 (2)
N10.7013 (4)0.1337 (3)0.5349 (2)0.0272 (6)
H1N10.721 (5)0.173 (3)0.577 (2)0.044 (11)*
H1N20.680 (6)0.0521 (16)0.568 (3)0.053 (13)*
N20.6604 (3)0.3220 (2)0.39282 (18)0.0179 (5)
H2N0.642 (5)0.354 (3)0.3237 (10)0.042 (11)*
N30.7031 (3)0.3921 (2)0.45314 (18)0.0171 (5)
N40.7758 (4)0.7985 (2)0.45494 (19)0.0208 (5)
H4N0.762 (5)0.8832 (11)0.440 (3)0.040 (11)*
N50.5325 (4)0.4371 (3)0.1469 (2)0.0239 (6)
H5N10.450 (4)0.502 (2)0.147 (3)0.037 (10)*
H5N20.487 (5)0.365 (2)0.154 (3)0.037 (10)*
N60.7531 (4)0.5739 (2)0.0624 (2)0.0223 (5)
H6N0.855 (3)0.590 (4)0.021 (3)0.047 (11)*
N70.6520 (3)0.6664 (2)0.09750 (19)0.0199 (5)
N80.6103 (3)1.0744 (2)0.11636 (19)0.0210 (5)
H8N0.640 (5)1.1508 (18)0.111 (3)0.037 (10)*
C10.6607 (4)0.1932 (3)0.4337 (2)0.0173 (6)
C20.6936 (4)0.5146 (3)0.4011 (2)0.0175 (6)
H20.65790.54590.32960.021*
C30.7347 (4)0.6064 (3)0.4466 (2)0.0161 (6)
C40.7238 (4)0.7375 (3)0.3922 (2)0.0196 (6)
H40.68570.77940.32130.024*
C50.7953 (4)0.5851 (3)0.5511 (2)0.0148 (5)
C60.8287 (4)0.4758 (3)0.6422 (2)0.0188 (6)
H60.81360.39240.64260.023*
C70.8843 (4)0.4918 (3)0.7319 (2)0.0230 (6)
H70.90670.41840.79440.028*
C80.9078 (4)0.6146 (3)0.7319 (2)0.0237 (7)
H80.94640.62270.79430.028*
C90.8759 (4)0.7244 (3)0.6426 (2)0.0211 (6)
H90.89250.80740.64260.025*
C100.8183 (4)0.7082 (3)0.5529 (2)0.0174 (6)
C110.6925 (4)0.4572 (3)0.0883 (2)0.0192 (6)
C120.7333 (4)0.7692 (3)0.0773 (2)0.0189 (6)
H120.85480.77380.04340.023*
C130.6459 (4)0.8771 (3)0.1045 (2)0.0164 (6)
C140.7289 (4)0.9880 (3)0.0867 (2)0.0191 (6)
H140.85271.00170.05760.023*
C150.4594 (4)0.8983 (3)0.1488 (2)0.0156 (6)
C160.3047 (4)0.8256 (3)0.1817 (2)0.0210 (6)
H160.31220.74120.17900.025*
C170.1416 (4)0.8801 (3)0.2180 (2)0.0247 (7)
H170.03720.83120.24140.030*
C180.1256 (4)1.0053 (3)0.2214 (2)0.0245 (7)
H180.01061.04030.24530.029*
C190.2771 (4)1.0783 (3)0.1898 (2)0.0231 (6)
H190.26821.16290.19220.028*
C200.4422 (4)1.0232 (3)0.1547 (2)0.0185 (6)
U11U22U33U12U13U23
S10.0312 (4)0.0162 (4)0.0216 (4)−0.0052 (3)−0.0014 (3)−0.0101 (3)
S20.0274 (4)0.0203 (4)0.0321 (4)−0.0073 (3)0.0061 (3)−0.0150 (3)
N10.0433 (17)0.0196 (14)0.0201 (13)−0.0059 (13)−0.0052 (12)−0.0070 (11)
N20.0242 (13)0.0160 (12)0.0171 (12)−0.0055 (10)−0.0017 (10)−0.0089 (10)
N30.0168 (12)0.0196 (13)0.0199 (12)−0.0058 (10)0.0008 (9)−0.0120 (10)
N40.0269 (13)0.0135 (13)0.0233 (13)−0.0045 (11)−0.0012 (10)−0.0072 (10)
N50.0218 (13)0.0207 (14)0.0303 (14)−0.0038 (11)0.0041 (11)−0.0108 (12)
N60.0231 (13)0.0180 (13)0.0280 (14)−0.0031 (11)0.0032 (11)−0.0114 (11)
N70.0221 (12)0.0150 (12)0.0232 (12)0.0008 (10)−0.0018 (10)−0.0081 (10)
N80.0269 (14)0.0162 (13)0.0244 (13)−0.0094 (11)0.0015 (10)−0.0105 (10)
C10.0165 (13)0.0175 (14)0.0188 (14)−0.0034 (11)0.0013 (11)−0.0074 (11)
C20.0157 (13)0.0213 (15)0.0173 (13)−0.0058 (12)0.0007 (10)−0.0079 (11)
C30.0144 (13)0.0178 (14)0.0177 (13)−0.0029 (11)0.0015 (10)−0.0081 (11)
C40.0223 (15)0.0182 (15)0.0188 (14)−0.0035 (12)−0.0005 (11)−0.0069 (12)
C50.0110 (12)0.0163 (14)0.0194 (13)−0.0042 (11)0.0029 (10)−0.0089 (11)
C60.0176 (14)0.0181 (15)0.0220 (14)−0.0036 (12)−0.0004 (11)−0.0080 (12)
C70.0224 (15)0.0254 (16)0.0189 (14)−0.0020 (13)−0.0019 (12)−0.0051 (12)
C80.0193 (14)0.0349 (18)0.0221 (15)−0.0027 (13)−0.0025 (12)−0.0159 (13)
C90.0171 (14)0.0239 (16)0.0279 (15)−0.0020 (12)−0.0003 (12)−0.0163 (13)
C100.0138 (13)0.0175 (15)0.0225 (14)−0.0024 (11)0.0023 (11)−0.0096 (12)
C110.0210 (15)0.0170 (15)0.0215 (14)−0.0031 (12)−0.0030 (11)−0.0083 (12)
C120.0204 (14)0.0175 (15)0.0176 (13)−0.0009 (12)−0.0011 (11)−0.0053 (11)
C130.0206 (14)0.0125 (14)0.0152 (13)−0.0041 (11)−0.0022 (11)−0.0025 (11)
C140.0199 (14)0.0208 (15)0.0177 (13)−0.0047 (12)−0.0003 (11)−0.0072 (12)
C150.0175 (13)0.0149 (14)0.0133 (13)−0.0013 (11)−0.0039 (10)−0.0030 (11)
C160.0237 (15)0.0165 (15)0.0216 (14)−0.0060 (12)−0.0035 (12)−0.0032 (12)
C170.0172 (14)0.0294 (17)0.0258 (15)−0.0066 (13)−0.0009 (12)−0.0065 (13)
C180.0201 (15)0.0312 (18)0.0223 (15)0.0027 (13)−0.0005 (12)−0.0114 (13)
C190.0299 (16)0.0206 (16)0.0207 (14)0.0018 (13)−0.0057 (12)−0.0101 (12)
C200.0237 (15)0.0180 (14)0.0161 (13)−0.0040 (12)−0.0050 (11)−0.0072 (11)
S1—C11.696 (3)C4—H40.9500
S2—C111.689 (3)C5—C61.399 (4)
N1—C11.329 (4)C5—C101.415 (4)
N1—H1N10.87 (3)C6—C71.388 (4)
N1—H1N20.89 (3)C6—H60.9500
N2—C11.341 (4)C7—C81.403 (4)
N2—N31.393 (3)C7—H70.9500
N2—H2N0.887 (10)C8—C91.386 (4)
N3—C21.289 (4)C8—H80.9500
N4—C41.365 (3)C9—C101.395 (4)
N4—C101.376 (4)C9—H90.9500
N4—H4N0.886 (10)C12—C131.436 (4)
N5—C111.335 (4)C12—H120.9500
N5—H5N10.88 (3)C13—C141.379 (4)
N5—H5N20.88 (3)C13—C151.446 (4)
N6—C111.344 (4)C14—H140.9500
N6—N71.385 (3)C15—C161.409 (4)
N6—H6N0.88 (3)C15—C201.414 (4)
N7—C121.287 (4)C16—C171.384 (4)
N8—C141.350 (4)C16—H160.9500
N8—C201.384 (4)C17—C181.405 (4)
N8—H8N0.88 (3)C17—H170.9500
C2—C31.443 (4)C18—C191.391 (4)
C2—H20.9500C18—H180.9500
C3—C41.376 (4)C19—C201.391 (4)
C3—C51.443 (4)C19—H190.9500
C1—N1—H1N1124 (3)C8—C7—H7119.5
C1—N1—H1N2120 (3)C9—C8—C7121.4 (3)
H1N1—N1—H1N2114 (4)C9—C8—H8119.3
C1—N2—N3121.7 (2)C7—C8—H8119.3
C1—N2—H2N113 (2)C8—C9—C10117.4 (3)
N3—N2—H2N125 (2)C8—C9—H9121.3
C2—N3—N2113.1 (2)C10—C9—H9121.3
C4—N4—C10109.1 (2)N4—C10—C9129.9 (3)
C4—N4—H4N125 (2)N4—C10—C5108.0 (2)
C10—N4—H4N125 (2)C9—C10—C5122.1 (3)
C11—N5—H5N1121 (2)N5—C11—N6117.1 (3)
C11—N5—H5N2115 (2)N5—C11—S2123.0 (2)
H5N1—N5—H5N2116 (3)N6—C11—S2119.9 (2)
C11—N6—N7120.0 (2)N7—C12—C13122.0 (3)
C11—N6—H6N118 (3)N7—C12—H12119.0
N7—N6—H6N122 (3)C13—C12—H12119.0
C12—N7—N6114.4 (2)C14—C13—C12124.2 (3)
C14—N8—C20109.3 (2)C14—C13—C15105.9 (2)
C14—N8—H8N123 (2)C12—C13—C15129.9 (2)
C20—N8—H8N127 (2)N8—C14—C13110.7 (3)
N1—C1—N2117.8 (2)N8—C14—H14124.6
N1—C1—S1123.6 (2)C13—C14—H14124.6
N2—C1—S1118.6 (2)C16—C15—C20118.8 (3)
N3—C2—C3123.1 (3)C16—C15—C13134.5 (3)
N3—C2—H2118.5C20—C15—C13106.7 (2)
C3—C2—H2118.5C17—C16—C15118.4 (3)
C4—C3—C2123.6 (3)C17—C16—H16120.8
C4—C3—C5106.6 (2)C15—C16—H16120.8
C2—C3—C5129.8 (3)C16—C17—C18122.0 (3)
N4—C4—C3110.1 (3)C16—C17—H17119.0
N4—C4—H4125.0C18—C17—H17119.0
C3—C4—H4125.0C19—C18—C17120.4 (3)
C6—C5—C10119.4 (2)C19—C18—H18119.8
C6—C5—C3134.3 (2)C17—C18—H18119.8
C10—C5—C3106.3 (2)C20—C19—C18117.7 (3)
C7—C6—C5118.6 (3)C20—C19—H19121.2
C7—C6—H6120.7C18—C19—H19121.2
C5—C6—H6120.7N8—C20—C19129.9 (3)
C6—C7—C8121.1 (3)N8—C20—C15107.4 (2)
C6—C7—H7119.5C19—C20—C15122.6 (3)
C1—N2—N3—C2−179.2 (2)C3—C5—C10—C9179.8 (2)
C11—N6—N7—C12173.1 (3)N7—N6—C11—N50.9 (4)
N3—N2—C1—N10.7 (4)N7—N6—C11—S2−177.8 (2)
N3—N2—C1—S1−178.20 (19)N6—N7—C12—C13177.7 (2)
N2—N3—C2—C3−179.0 (2)N7—C12—C13—C14178.5 (3)
N3—C2—C3—C4−179.5 (3)N7—C12—C13—C15−4.9 (5)
N3—C2—C3—C51.5 (5)C20—N8—C14—C13−0.3 (3)
C10—N4—C4—C3−1.2 (3)C12—C13—C14—N8177.4 (2)
C2—C3—C4—N4−178.3 (3)C15—C13—C14—N80.1 (3)
C5—C3—C4—N40.9 (3)C14—C13—C15—C16178.4 (3)
C4—C3—C5—C6178.6 (3)C12—C13—C15—C161.3 (5)
C2—C3—C5—C6−2.3 (5)C14—C13—C15—C200.1 (3)
C4—C3—C5—C10−0.2 (3)C12—C13—C15—C20−177.0 (3)
C2—C3—C5—C10178.9 (3)C20—C15—C16—C170.3 (4)
C10—C5—C6—C7−0.2 (4)C13—C15—C16—C17−177.8 (3)
C3—C5—C6—C7−178.8 (3)C15—C16—C17—C181.0 (4)
C5—C6—C7—C8−0.3 (4)C16—C17—C18—C19−1.4 (4)
C6—C7—C8—C90.3 (4)C17—C18—C19—C200.4 (4)
C7—C8—C9—C100.4 (4)C14—N8—C20—C19−177.0 (3)
C4—N4—C10—C9−179.3 (3)C14—N8—C20—C150.4 (3)
C4—N4—C10—C51.0 (3)C18—C19—C20—N8178.0 (3)
C8—C9—C10—N4179.5 (3)C18—C19—C20—C150.9 (4)
C8—C9—C10—C5−0.9 (4)C16—C15—C20—N8−178.9 (2)
C6—C5—C10—N4−179.5 (2)C13—C15—C20—N8−0.3 (3)
C3—C5—C10—N4−0.5 (3)C16—C15—C20—C19−1.3 (4)
C6—C5—C10—C90.8 (4)C13—C15—C20—C19177.4 (3)
D—H···AD—HH···AD···AD—H···A
N4—H4n···S1i0.89 (1)2.56 (2)3.383 (3)156 (3)
N8—H8n···S2i0.88 (3)2.49 (2)3.325 (2)157 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4n⋯S1i0.89 (1)2.56 (2)3.383 (3)156 (3)
N8—H8n⋯S2i0.88 (3)2.49 (2)3.325 (2)157 (3)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Copper complexes of imidazole-2-, pyrrole-2- and indol-3-carbaldehyde thiosemicarbazones: inhibitory activity against fungi and bacteria.

Authors:  María C Rodríguez-Argüelles; Estefania C López-Silva; Jesús Sanmartín; P Pelagatti; Franca Zani
Journal:  J Inorg Biochem       Date:  2005-09-26       Impact factor: 4.155

3.  [Studies on chemotherapeutics for Mycobacterium tuberculosis. XVII. Synthesis and antibacterial activity on Mycobacterium tuberculosis of indole-3-carboxaldehyde derivatives].

Authors:  F Fujikawa; I Yamashita; T Seno; M Sasaki; M Naito
Journal:  Yakugaku Zasshi       Date:  1966-09       Impact factor: 0.302

  3 in total
  1 in total

1.  trans-Bis(1H-indole-3-carbaldehyde thio-semicarbazonato-κN,S)nickel(II).

Authors:  Mohd Razali Rizal; Hapipah M Ali; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-17
  1 in total

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