Literature DB >> 21202210

Bis[1-(2-hydroxy-ethyl)-2-methyl-5-nitro-1H-imidazole-κN]silver(I) nitrate.

Hoong-Kun Fun, Samuel Robinson Jebas, T Balasubramanian.   

Abstract

In the title compound, [Ag(C(6)H(9)N(3)O(3))(2)]NO(3), the Ag atom is bicoordinated in a distorted linear configuration by two 1-(2-hydroxy-ethyl)-2-methyl-5-nitro-imidazole ligands through one of the N atoms. The dihedral angle between the two imidazole rings is 16.1 (2)°. The O atoms of the nitrate anion are disordered over two positions; the site occupancy factors are 0.8 and 0.2. The ions are -connected by C-H⋯O inter-actions, while two weak intra-molecular C-H⋯O inter-actions producing an S(6) ring motif are observed. The nitrate anion is linked to the hydroxyl groups of two neighbouring cations by O-H⋯O hydrogen bonds. The ions are packed into infinite chains along the [100] direction.

Entities:  

Year:  2008        PMID: 21202210      PMCID: PMC2961201          DOI: 10.1107/S1600536808009860

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature regarding pharmaceutical uses of nitro­imidazole derivatives, see: Credito et al. (2000 ▶); Edwards (1981 ▶); Mendz & Megraud (2002 ▶). For comparable crystal structures, see: Blaton et al. (1979 ▶); Gao et al. (2004 ▶); Ni et al. (2003 ▶); Pi et al. (2005 ▶); Tong & Chen (2000 ▶); Yang et al. (2005 ▶); You & Zhu (2004 ▶).

Experimental

Crystal data

[Ag(C6H9N3O3)2]NO3 M = 512.2 Triclinic, a = 6.6912 (1) Å b = 11.6846 (3) Å c = 12.9052 (3) Å α = 63.707 (1)° β = 88.820 (1)° γ = 87.486 (1)° V = 903.72 (3) Å3 Z = 2 Mo Kα radiation μ = 1.18 mm−1 T = 100.0 (1) K 0.74 × 0.22 × 0.1 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.476, T max = 0.892 20384 measured reflections 6509 independent reflections 5958 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.059 S = 1.08 6509 reflections 291 parameters H-atom parameters constrained Δρmax = 0.58 e Å−3 Δρmin = −0.65 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808009860/ez2123sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808009860/ez2123Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ag(C6H9N3O3)2]NO3Z = 2
Mr = 512.2F000 = 516
Triclinic, P1Dx = 1.882 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 6.6912 (1) ÅCell parameters from 9959 reflections
b = 11.6846 (3) Åθ = 3.2–37.8º
c = 12.9052 (3) ŵ = 1.18 mm1
α = 63.707 (1)ºT = 100.0 (1) K
β = 88.820 (1)ºPlate, colourless
γ = 87.486 (1)º0.74 × 0.22 × 0.1 mm
V = 903.72 (3) Å3
Bruker SMART APEXII CCD area-detector diffractometerRint = 0.026
φ and ω scansθmax = 32.5º
Absorption correction: multi-scan(SADABS; Bruker, 2005)θmin = 2.0º
Tmin = 0.476, Tmax = 0.892h = −10→10
20384 measured reflectionsk = −17→17
6509 independent reflectionsl = −19→19
5958 reflections with I > 2σ(I)
Refinement on F2H-atom parameters constrained
Least-squares matrix: full  w = 1/[σ2(Fo2) + (0.0281P)2 + 0.2414P] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.024(Δ/σ)max = 0.005
wR(F2) = 0.059Δρmax = 0.58 e Å3
S = 1.08Δρmin = −0.65 e Å3
6509 reflectionsExtinction correction: none
291 parameters
Geometry. Experimental. The low-temperature data was collected with the Oxford Crysosystem Cobra low-temperature attachement.All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
Ag10.247504 (15)0.147593 (9)1.004773 (8)0.01643 (3)
O10.93316 (17)0.44665 (10)0.82229 (9)0.0223 (2)
H1010.90520.37850.85940.027*
O20.70475 (17)0.41493 (11)0.50145 (9)0.0243 (2)
O30.62322 (18)0.21652 (11)0.56769 (10)0.0250 (2)
O4−0.46849 (17)0.21717 (10)1.24656 (9)0.0214 (2)
H1O4−0.42880.20021.20030.026*
O5−0.18196 (16)−0.16629 (10)1.51008 (8)0.0191 (2)
O6−0.10089 (17)−0.26774 (9)1.40801 (9)0.0211 (2)
N10.39023 (17)0.26342 (10)0.84333 (9)0.01355 (19)
N20.56794 (17)0.41644 (10)0.71061 (9)0.01301 (19)
N30.10790 (17)0.07543 (11)1.17193 (9)0.0136 (2)
N4−0.07227 (16)0.06598 (10)1.32188 (9)0.01194 (19)
N50.63543 (18)0.31651 (12)0.57702 (10)0.0168 (2)
N6−0.11678 (17)−0.16962 (11)1.42100 (9)0.0139 (2)
C10.02601 (19)0.14301 (12)1.22443 (11)0.0127 (2)
C2−0.0527 (2)−0.05563 (12)1.32798 (11)0.0124 (2)
C30.0586 (2)−0.04857 (12)1.23573 (11)0.0137 (2)
H3A0.0947−0.11651.21920.016*
C40.4512 (2)0.22327 (12)0.76340 (11)0.0140 (2)
H4A0.42260.14550.76450.017*
C50.5613 (2)0.31599 (12)0.68117 (11)0.0135 (2)
C60.46316 (19)0.38035 (12)0.80999 (11)0.0133 (2)
C70.4302 (2)0.45784 (13)0.87398 (13)0.0190 (3)
H7A0.31410.42960.92230.028*
H7B0.41030.54610.82010.028*
H7C0.54490.44810.92110.028*
C80.6977 (2)0.52691 (12)0.66141 (12)0.0170 (2)
H8A0.64910.59130.6850.02*
H8B0.69310.56420.57770.02*
C90.9125 (2)0.48636 (14)0.70209 (13)0.0188 (3)
H9A0.95640.41680.68440.023*
H9B0.99820.55740.66030.023*
C10−0.2072 (2)0.10938 (13)1.39020 (11)0.0147 (2)
H10A−0.17020.19341.3790.018*
H10B−0.19190.05131.47160.018*
C11−0.4241 (2)0.11526 (13)1.35576 (12)0.0165 (2)
H11A−0.45410.03541.35450.02*
H11B−0.50930.12451.41350.02*
C120.0442 (2)0.28233 (13)1.18237 (13)0.0182 (3)
H12A0.09930.31831.10570.027*
H12B0.13060.29771.2330.027*
H12C−0.08560.32131.18120.027*
N70.25847 (17)−0.14402 (10)0.98555 (9)0.0148 (2)
O7A0.2995 (2)−0.22646 (13)0.95060 (13)0.0197 (3)0.8
O8A0.1492 (2)−0.17829 (13)1.07672 (11)0.0195 (2)0.8
O9A0.3251 (2)−0.03721 (13)0.93965 (13)0.0255 (3)0.8
O7B0.1786 (8)−0.0844 (5)1.0334 (4)0.0190 (10)0.2
O8B0.3686 (7)−0.0715 (5)0.8893 (4)0.0154 (9)0.2
O9B0.2298 (9)−0.2500 (5)0.9990 (5)0.0163 (9)0.2
U11U22U33U12U13U23
Ag10.01378 (5)0.01905 (5)0.01297 (5)−0.00266 (4)0.00451 (3)−0.00392 (4)
O10.0242 (5)0.0180 (5)0.0232 (5)−0.0036 (4)−0.0036 (4)−0.0073 (4)
O20.0234 (5)0.0286 (6)0.0147 (4)−0.0036 (4)0.0057 (4)−0.0041 (4)
O30.0304 (6)0.0284 (6)0.0222 (5)−0.0004 (5)0.0003 (4)−0.0168 (4)
O40.0219 (5)0.0204 (5)0.0198 (5)0.0055 (4)−0.0027 (4)−0.0075 (4)
O50.0193 (5)0.0222 (5)0.0135 (4)−0.0019 (4)0.0060 (4)−0.0060 (4)
O60.0281 (6)0.0133 (4)0.0208 (5)−0.0021 (4)0.0040 (4)−0.0065 (4)
N10.0130 (5)0.0130 (5)0.0132 (5)−0.0023 (4)0.0022 (4)−0.0044 (4)
N20.0127 (5)0.0115 (4)0.0127 (4)−0.0016 (4)0.0002 (4)−0.0033 (4)
N30.0131 (5)0.0140 (5)0.0124 (4)−0.0002 (4)0.0023 (4)−0.0049 (4)
N40.0111 (5)0.0135 (5)0.0121 (4)−0.0002 (4)0.0009 (4)−0.0065 (4)
N50.0141 (5)0.0230 (6)0.0128 (5)0.0005 (4)−0.0001 (4)−0.0074 (4)
N60.0119 (5)0.0149 (5)0.0133 (5)−0.0005 (4)0.0008 (4)−0.0048 (4)
C10.0107 (5)0.0141 (5)0.0134 (5)−0.0006 (4)0.0004 (4)−0.0061 (4)
C20.0136 (5)0.0114 (5)0.0115 (5)−0.0006 (4)0.0013 (4)−0.0044 (4)
C30.0148 (6)0.0125 (5)0.0126 (5)0.0015 (4)0.0013 (4)−0.0046 (4)
C40.0146 (6)0.0137 (5)0.0137 (5)−0.0022 (4)0.0006 (4)−0.0059 (4)
C50.0136 (5)0.0151 (5)0.0115 (5)−0.0016 (4)0.0008 (4)−0.0056 (4)
C60.0119 (5)0.0122 (5)0.0142 (5)−0.0002 (4)0.0003 (4)−0.0044 (4)
C70.0205 (6)0.0159 (6)0.0227 (6)−0.0001 (5)0.0030 (5)−0.0106 (5)
C80.0173 (6)0.0124 (5)0.0172 (6)−0.0055 (5)0.0023 (5)−0.0026 (4)
C90.0152 (6)0.0185 (6)0.0232 (6)−0.0056 (5)0.0028 (5)−0.0094 (5)
C100.0154 (6)0.0175 (6)0.0135 (5)0.0011 (5)0.0022 (5)−0.0091 (5)
C110.0138 (6)0.0183 (6)0.0167 (6)0.0007 (5)0.0030 (5)−0.0072 (5)
C120.0188 (6)0.0136 (5)0.0221 (6)−0.0023 (5)0.0027 (5)−0.0078 (5)
N70.0136 (5)0.0157 (5)0.0162 (5)0.0004 (4)−0.0016 (4)−0.0082 (4)
O7A0.0249 (7)0.0191 (6)0.0181 (6)0.0024 (5)−0.0005 (6)−0.0111 (5)
O8A0.0195 (6)0.0248 (7)0.0148 (5)−0.0011 (5)0.0033 (5)−0.0095 (5)
O9A0.0274 (7)0.0148 (6)0.0300 (7)−0.0050 (5)0.0031 (6)−0.0059 (5)
O7B0.018 (2)0.026 (3)0.020 (2)0.003 (2)0.0041 (19)−0.017 (2)
O8B0.013 (2)0.016 (2)0.013 (2)−0.0043 (17)0.0042 (17)−0.0027 (17)
O9B0.023 (3)0.010 (2)0.012 (2)−0.0014 (19)0.001 (2)−0.0019 (17)
Ag1—N32.1475 (11)C4—C51.3646 (17)
Ag1—N12.1489 (11)C4—H4A0.93
O1—C91.4165 (18)C6—C71.4791 (18)
O1—H1010.7548C7—H7A0.96
O2—N51.2342 (15)C7—H7B0.96
O3—N51.2327 (16)C7—H7C0.96
O4—C111.4112 (17)C8—C91.522 (2)
O4—H1O40.7478C8—H8A0.97
O5—N61.2372 (14)C8—H8B0.97
O6—N61.2299 (15)C9—H9A0.97
N1—C61.3487 (16)C9—H9B0.97
N1—C41.3583 (17)C10—C111.5160 (19)
N2—C61.3505 (16)C10—H10A0.97
N2—C51.3871 (16)C10—H10B0.97
N2—C81.4738 (16)C11—H11A0.97
N3—C11.3430 (16)C11—H11B0.97
N3—C31.3638 (16)C12—H12A0.96
N4—C11.3561 (16)C12—H12B0.96
N4—C21.3884 (16)C12—H12C0.96
N4—C101.4742 (16)N7—O9B1.195 (5)
N5—C51.4206 (17)N7—O7B1.219 (5)
N6—C21.4182 (16)N7—O9A1.2207 (17)
C1—C121.4803 (18)N7—O7A1.2503 (17)
C2—C31.3643 (17)N7—O8A1.2854 (16)
C3—H3A0.93N7—O8B1.374 (5)
N3—Ag1—N1165.34 (4)N2—C8—C9110.63 (11)
C9—O1—H101114.1N2—C8—H8A109.5
C11—O4—H1O4109.2C9—C8—H8A109.5
C6—N1—C4106.90 (10)N2—C8—H8B109.5
C6—N1—Ag1127.13 (9)C9—C8—H8B109.5
C4—N1—Ag1125.25 (9)H8A—C8—H8B108.1
C6—N2—C5105.98 (10)O1—C9—C8112.19 (11)
C6—N2—C8124.90 (11)O1—C9—H9A109.2
C5—N2—C8127.79 (11)C8—C9—H9A109.2
C1—N3—C3107.24 (10)O1—C9—H9B109.2
C1—N3—Ag1127.60 (9)C8—C9—H9B109.2
C3—N3—Ag1124.41 (9)H9A—C9—H9B107.9
C1—N4—C2105.63 (10)N4—C10—C11111.72 (11)
C1—N4—C10125.57 (11)N4—C10—H10A109.3
C2—N4—C10127.52 (10)C11—C10—H10A109.3
O3—N5—O2123.88 (12)N4—C10—H10B109.3
O3—N5—C5116.63 (11)C11—C10—H10B109.3
O2—N5—C5119.48 (12)H10A—C10—H10B107.9
O6—N6—O5123.70 (11)O4—C11—C10112.83 (11)
O6—N6—C2116.89 (11)O4—C11—H11A109
O5—N6—C2119.40 (11)C10—C11—H11A109
N3—C1—N4110.81 (11)O4—C11—H11B109
N3—C1—C12124.38 (11)C10—C11—H11B109
N4—C1—C12124.80 (11)H11A—C11—H11B107.8
C3—C2—N4108.17 (11)C1—C12—H12A109.5
C3—C2—N6125.67 (12)C1—C12—H12B109.5
N4—C2—N6125.76 (11)H12A—C12—H12B109.5
N3—C3—C2108.13 (11)C1—C12—H12C109.5
N3—C3—H3A125.9H12A—C12—H12C109.5
C2—C3—H3A125.9H12B—C12—H12C109.5
N1—C4—C5108.62 (11)O9B—N7—O7B129.1 (4)
N1—C4—H4A125.7O9B—N7—O9A157.0 (3)
C5—C4—H4A125.7O7B—N7—O9A73.6 (3)
C4—C5—N2107.74 (11)O9B—N7—O7A34.6 (3)
C4—C5—N5126.13 (12)O7B—N7—O7A163.2 (3)
N2—C5—N5125.74 (11)O9A—N7—O7A122.53 (14)
N1—C6—N2110.75 (11)O9B—N7—O8A82.5 (3)
N1—C6—C7124.08 (12)O7B—N7—O8A47.6 (3)
N2—C6—C7125.16 (11)O9A—N7—O8A120.45 (13)
C6—C7—H7A109.5O7A—N7—O8A116.95 (13)
C6—C7—H7B109.5O9B—N7—O8B115.2 (4)
H7A—C7—H7B109.5O7B—N7—O8B114.5 (4)
C6—C7—H7C109.5O9A—N7—O8B41.9 (2)
H7A—C7—H7C109.5O7A—N7—O8B80.9 (2)
H7B—C7—H7C109.5O8A—N7—O8B162.1 (2)
N3—Ag1—N1—C68.8 (2)Ag1—N1—C4—C5−170.95 (9)
N3—Ag1—N1—C4177.85 (15)N1—C4—C5—N2−0.29 (16)
N1—Ag1—N3—C117.4 (2)N1—C4—C5—N5−173.38 (13)
N1—Ag1—N3—C3−173.76 (15)C6—N2—C5—C40.52 (15)
C3—N3—C1—N41.10 (15)C8—N2—C5—C4167.74 (12)
Ag1—N3—C1—N4171.44 (9)C6—N2—C5—N5173.64 (13)
C3—N3—C1—C12−179.92 (13)C8—N2—C5—N5−19.1 (2)
Ag1—N3—C1—C12−9.6 (2)O3—N5—C5—C4−10.8 (2)
C2—N4—C1—N3−1.28 (15)O2—N5—C5—C4168.30 (14)
C10—N4—C1—N3−169.09 (12)O3—N5—C5—N2177.36 (13)
C2—N4—C1—C12179.75 (13)O2—N5—C5—N2−3.6 (2)
C10—N4—C1—C1211.9 (2)C4—N1—C6—N20.39 (15)
C1—N4—C2—C30.96 (15)Ag1—N1—C6—N2171.07 (9)
C10—N4—C2—C3168.46 (12)C4—N1—C6—C7179.94 (13)
C1—N4—C2—N6174.09 (13)Ag1—N1—C6—C7−9.39 (19)
C10—N4—C2—N6−18.4 (2)C5—N2—C6—N1−0.57 (15)
O6—N6—C2—C3−13.3 (2)C8—N2—C6—N1−168.26 (12)
O5—N6—C2—C3165.71 (13)C5—N2—C6—C7179.89 (13)
O6—N6—C2—N4174.73 (13)C8—N2—C6—C712.2 (2)
O5—N6—C2—N4−6.2 (2)C6—N2—C8—C992.52 (15)
C1—N3—C3—C2−0.46 (16)C5—N2—C8—C9−72.45 (17)
Ag1—N3—C3—C2−171.18 (9)N2—C8—C9—O1−66.96 (14)
N4—C2—C3—N3−0.32 (16)C1—N4—C10—C1194.80 (15)
N6—C2—C3—N3−173.46 (12)C2—N4—C10—C11−70.35 (17)
C6—N1—C4—C5−0.05 (15)N4—C10—C11—O4−71.90 (14)
D—H···AD—HH···AD···AD—H···A
O1—H101···O9Bi0.752.012.685 (5)150
O1—H101···O8Ai0.752.152.8872 (17)164
O4—H1O4···O7Aii0.752.022.7225 (18)158
O4—H1O4···O8Bii0.752.292.985 (5)156
C3—H3A···O8A0.932.273.0820145
C4—H4A···O9A0.932.423.0269122
C8—H8B···O20.972.352.891 (2)115
C10—H10B···O50.972.362.888 (2)113
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H101⋯O9Bi0.752.012.685 (5)150
O1—H101⋯O8Ai0.752.152.8872 (17)164
O4—H1O4⋯O7Aii0.752.022.7225 (18)158
O4—H1O4⋯O8Bii0.752.292.985 (5)156
C3—H3A⋯O8A0.932.273.0820145
C4—H4A⋯O9A0.932.423.0269122
C8—H8B⋯O20.972.352.891 (2)115
C10—H10B⋯O50.972.362.888 (2)113

Symmetry codes: (i) ; (ii) .

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4.  A short history of SHELX.

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Journal:  Prog Med Chem       Date:  1981

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Authors:  Shan Gao; Zhen-Zhong Lu; Li Hua Huo; Hui Zhao
Journal:  Acta Crystallogr C       Date:  2004-11-23       Impact factor: 1.172

8.  Bis(4-[N,N-bis(2-cyanoethyl)amino]pyridine-kappaN(1))silver(I) perchlorate, with the perchlorate anion located in the cation cavity.

Authors:  Jun Ni; Yi Zhi Li; Zheng Xue; Hui Lan Chen; Zhi Lin Wang
Journal:  Acta Crystallogr C       Date:  2003-05-10       Impact factor: 1.172

  8 in total
  2 in total

1.  Bis(ethyl 2-amino-4-thia-zoleacetato-κN)silver(I) nitrate.

Authors:  Lai-Jun Zhang; Xing-Can Shen; Hong Liang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-18

2.  Crystal structure of bis-[1-(2-hy-droxy-eth-yl)-2-methyl-5-nitro-1H-imidazole-κN (3)]silver(I) tetra-fluorido-borate methanol monosolvate.

Authors:  Joshua H Palmer; Rita K Upmacis
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-02-21
  2 in total

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